genome.fa.s18.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  141  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44231284--44231405	40	3.0	41	84	4	142	27	22	22	28	1.99
44231015--44231383	155	2.4	154	87	2	526	28	21	19	30	1.98
44234287--44234409	27	4.8	26	71	10	110	23	14	17	43	1.86
44234288--44234409	53	2.4	49	81	8	147	22	14	18	44	1.86
44245299--44245986	225	3.0	230	87	6	1052	37	16	22	23	1.94
44253590--44253717	49	2.6	50	74	2	123	25	21	28	25	1.99
44256093--44256133	20	2.2	18	91	8	64	17	0	4	78	0.93
44262889--44262953	32	2.0	32	100	0	130	41	18	6	33	1.75
44265196--44265334	44	3.2	44	64	8	102	27	30	23	18	1.98
44265191--44265374	88	2.1	88	89	0	278	27	27	24	20	1.99
44265376--44265539	44	3.8	43	73	5	150	25	23	26	24	2.00
44265308--44265558	87	2.9	87	84	2	326	26	24	24	24	2.00
44265349--44265492	44	3.3	44	71	5	139	29	20	25	24	1.99
44265506--44266231	44	16.7	44	70	11	324	28	20	22	27	1.99
44265506--44266394	217	4.1	217	90	0	1348	28	20	22	28	1.98
44265627--44266394	44	17.6	44	69	14	287	29	19	22	28	1.98
44268436--44268626	36	5.0	36	82	12	229	36	13	19	29	1.91
44268400--44268626	82	2.9	81	86	7	310	36	12	20	30	1.90
44270665--44270712	16	2.9	16	82	17	55	25	4	6	64	1.35
44278702--44278726	12	2.1	12	100	0	50	48	20	24	8	1.76
44284634--44284719	28	3.3	28	64	18	76	33	11	15	39	1.83
44284624--44284722	50	2.0	50	97	0	189	32	11	17	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44286026--44287051	513	2.0	513	99	0	2025	32	12	15	40	1.84
44293159--44293441	30	9.3	30	73	10	182	40	14	24	21	1.90
44293186--44293454	92	2.9	90	80	8	278	40	14	23	21	1.91
44293159--44293441	122	2.3	122	90	2	446	40	14	24	21	1.90
44295505--44295688	40	4.6	39	80	9	194	25	22	27	24	2.00
44295557--44295721	79	2.1	79	83	6	201	26	21	27	24	1.99
44303438--44303622	79	2.3	81	84	7	236	24	22	27	25	2.00
44303439--44303622	40	4.6	40	83	9	216	24	22	27	25	2.00
44303491--44303655	79	2.1	79	84	6	210	26	21	27	25	1.99
44309453--44309505	26	2.0	27	82	10	65	58	0	11	30	1.33
44309799--44309859	30	2.0	31	81	9	72	47	0	18	34	1.49
44310210--44310464	30	8.4	30	72	10	146	38	13	23	23	1.91
44310297--44310467	91	1.9	91	80	2	200	38	15	24	22	1.92
44310210--44310466	121	2.1	121	82	4	304	38	13	24	23	1.91
44333535--44333560	11	2.4	11	100	0	52	84	7	0	7	0.77
44337070--44337128	22	2.7	22	83	0	73	8	5	52	33	1.54
44346829--44347000	54	3.2	53	80	4	184	40	17	18	23	1.91
44346855--44347023	81	2.1	81	83	6	209	39	19	19	21	1.93
44346804--44347023	27	8.1	27	72	8	153	40	18	17	23	1.91
44347019--44347116	48	2.0	48	84	4	124	23	11	21	43	1.84
44347044--44347154	24	4.6	24	78	8	100	21	6	23	48	1.73
44347046--44347142	48	2.0	47	84	11	126	21	6	22	49	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44347054--44347154	48	2.1	47	82	10	116	19	5	23	50	1.70
44347329--44347451	32	3.8	32	79	4	140	19	17	22	40	1.91
44349374--44349595	110	2.0	111	95	0	401	32	22	19	25	1.97
44352943--44353133	50	3.8	50	80	0	202	21	27	22	28	1.99
44352943--44353126	100	1.8	100	80	0	224	21	26	23	28	1.99
44353526--44353589	30	2.1	30	85	0	83	32	23	9	34	1.87
44355998--44356111	37	3.1	36	78	6	104	42	28	14	15	1.86
44368764--44368840	26	3.0	26	78	0	100	37	22	20	19	1.94
44395120--44395341	50	4.3	50	88	3	309	26	22	27	22	1.99
44400880--44401165	143	2.0	143	100	0	572	36	7	23	32	1.83
44401593--44401828	50	4.7	50	77	3	217	28	23	25	22	1.99
44402007--44402064	20	3.3	17	77	15	55	55	5	24	15	1.61
44408376--44408452	22	3.2	22	65	19	55	37	25	12	23	1.91
44415692--44415742	22	2.3	22	83	6	59	70	13	9	5	1.32
44415866--44415912	25	2.0	23	91	8	76	72	0	21	6	1.07
44415868--44415922	25	2.3	23	82	14	67	74	0	21	3	0.97
44416246--44416289	18	2.4	18	88	7	63	72	0	27	0	0.85
44416223--44416282	23	2.6	23	78	7	59	68	1	30	0	0.99
44418248--44418279	12	2.7	12	90	0	55	28	6	15	50	1.68
44425265--44425800	75	7.0	74	80	8	533	31	17	19	31	1.95
44425265--44425800	151	3.5	149	82	6	569	31	17	19	31	1.95
44426126--44426196	30	2.4	29	88	9	101	33	15	2	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44426150--44426270	28	4.2	29	78	15	83	32	17	4	45	1.70
44426710--44426773	28	2.4	28	82	10	82	71	0	21	6	1.07
44426966--44427011	20	2.1	23	84	11	62	60	0	39	0	0.97
44427116--44427173	9	6.5	8	79	15	53	74	0	24	1	0.92
44427125--44427173	18	2.8	17	87	6	62	75	0	22	2	0.90
44428533--44428694	74	2.2	74	78	2	173	39	25	14	19	1.90
44429617--44429659	21	2.0	22	86	4	61	18	6	4	69	1.29
44431323--44431470	33	4.4	32	71	21	99	30	28	20	20	1.98
44431346--44431677	103	3.2	103	87	0	477	32	26	19	20	1.97
44431628--44431679	27	1.9	27	96	0	95	28	30	21	19	1.97
44438152--44438265	54	2.1	53	90	1	174	29	33	16	20	1.95
44439180--44439248	20	3.5	20	76	7	86	28	21	30	18	1.97
44439169--44439264	40	2.4	39	91	3	147	31	22	31	14	1.94
44439169--44439264	20	4.8	20	72	12	81	31	22	31	14	1.94
44455394--44455455	30	2.1	30	100	0	124	46	11	3	38	1.56
44456469--44456542	37	2.0	37	100	0	148	40	18	10	29	1.85
44463107--44463162	5	11.2	5	100	0	112	41	0	19	39	1.52
44463746--44463843	48	2.0	48	98	0	187	32	5	20	41	1.74
44470368--44470412	21	2.1	21	84	8	56	57	2	2	37	1.23
44470707--44470771	10	6.5	10	74	13	53	29	3	3	64	1.23
44470708--44470783	21	3.5	21	80	10	73	30	3	2	63	1.26
44472341--44472507	43	3.9	43	83	4	203	26	27	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44472341--44472507	85	2.0	86	81	3	203	26	27	17	28	1.97
44472902--44472972	21	3.4	21	86	0	106	5	45	15	33	1.70
44474869--44475079	9	24.8	9	77	11	221	31	1	21	45	1.61
44474858--44474909	25	2.1	25	85	7	70	38	0	13	48	1.43
44474869--44475079	34	6.2	35	79	9	224	31	1	21	45	1.61
44474873--44475075	25	8.0	25	84	5	207	31	1	21	45	1.61
44475278--44475310	16	2.1	16	94	0	57	33	3	15	48	1.60
44475294--44476054	46	16.8	46	74	16	556	34	3	13	47	1.61
44475240--44475598	92	3.9	92	87	7	371	33	3	13	49	1.58
44475171--44475375	62	3.3	62	81	4	263	36	1	11	49	1.50
44475248--44475719	154	3.2	148	81	13	551	34	3	13	48	1.59
44475337--44476054	129	5.7	125	78	14	667	34	3	13	47	1.61
44475432--44475663	108	2.2	106	80	10	256	34	3	15	47	1.62
44475279--44476066	9	86.6	9	64	19	140	34	3	14	47	1.62
44475476--44475669	108	1.8	106	88	2	298	35	3	14	46	1.61
44475909--44476066	82	1.9	82	89	2	246	35	3	15	45	1.63
44477220--44477255	14	2.6	13	91	8	54	55	16	8	19	1.66
44477532--44477717	41	4.5	41	82	4	205	31	16	29	22	1.96
44477550--44477717	82	2.0	81	87	4	239	30	16	29	23	1.96
44488615--44488671	30	1.9	30	96	0	105	40	12	24	22	1.88
44488746--44488797	23	2.3	22	80	9	59	44	7	36	11	1.70
44501210--44501305	28	3.4	28	86	2	122	31	26	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44501210--44501277	27	2.5	27	92	2	118	30	26	13	29	1.94
44503194--44503242	24	1.9	27	88	12	77	30	2	0	67	1.02
44514057--44514096	21	1.9	21	84	0	53	7	10	37	45	1.66
44518530--44518733	40	5.1	40	78	8	202	24	27	23	25	2.00
44522302--44522404	50	2.1	50	98	0	197	28	33	17	21	1.96
44522374--44522903	260	2.0	265	93	3	917	27	22	20	30	1.98
44526929--44527070	39	3.6	40	80	11	152	23	28	22	25	2.00
44529589--44529981	123	3.2	124	79	5	362	29	17	16	37	1.91
44530077--44530168	34	2.7	33	81	6	112	42	15	1	41	1.54
44530078--44530189	34	3.3	33	72	16	104	46	14	0	38	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153