genome.fa.s18.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  143  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44881983--44882027	23	1.9	24	95	4	83	24	15	0	60	1.36
44882141--44882204	27	2.4	28	73	7	69	39	3	9	48	1.51
44890614--44890660	24	2.0	23	84	12	60	42	4	0	53	1.20
44890926--44890981	26	2.2	26	83	0	67	42	0	3	53	1.18
44891459--44891488	14	2.1	15	93	6	53	40	0	0	60	0.97
44893581--44893617	18	2.0	20	89	10	60	67	18	8	5	1.36
44895966--44896030	26	2.4	28	78	17	66	61	10	3	24	1.43
44895985--44896039	28	2.0	26	82	6	65	61	12	0	25	1.31
44896387--44896446	25	2.4	25	75	8	61	60	3	6	30	1.39
44898644--44898674	10	3.1	10	95	0	53	51	12	19	16	1.76
44899544--44899642	50	2.0	50	89	0	153	42	32	2	23	1.65
44899723--44899790	21	3.2	21	73	10	57	36	38	1	23	1.64
44900414--44900512	22	4.6	21	72	12	60	37	35	2	25	1.68
44900511--44900542	15	2.1	15	94	0	55	40	34	0	25	1.56
44900743--44900798	15	3.8	15	80	2	60	35	42	1	19	1.62
44901123--44901309	41	4.6	41	87	1	250	29	27	21	21	1.98
44901367--44901442	40	1.9	38	86	5	107	25	19	22	32	1.97
44903076--44903637	114	4.9	114	72	6	419	30	23	19	26	1.98
44903076--44903692	228	2.7	226	87	3	889	30	23	19	26	1.98
44904161--44904193	14	2.4	14	85	5	50	21	0	27	51	1.48
44904382--44904419	20	1.9	20	88	0	58	15	2	34	47	1.60
44904368--44904434	34	2.0	34	82	5	82	22	1	29	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44904668--44904711	21	2.1	21	86	0	61	15	20	25	38	1.92
44904887--44904968	43	1.9	43	84	0	110	21	20	29	28	1.98
44904952--44905201	86	2.9	85	78	7	247	27	30	16	25	1.97
44904992--44905201	43	4.9	42	77	5	145	28	30	16	24	1.96
44905509--44905578	21	3.3	21	83	0	86	4	42	18	34	1.70
44905550--44905695	65	2.2	66	85	4	197	14	28	17	40	1.88
44907533--44907613	41	2.0	40	97	0	144	35	22	20	19	1.95
44911199--44911315	16	7.8	16	66	25	67	33	2	18	45	1.63
44911210--44911282	25	2.7	25	81	10	74	34	2	16	46	1.61
44911267--44911669	9	46.7	9	67	20	84	40	1	13	44	1.51
44911420--44911465	22	2.1	22	91	0	74	43	0	10	45	1.39
44911387--44911871	56	8.2	56	79	12	526	41	1	11	45	1.49
44911442--44911589	31	4.5	34	83	12	186	40	0	11	47	1.45
44911474--44911576	22	4.7	22	70	24	76	37	0	11	50	1.39
44911458--44911894	31	14.5	31	70	22	176	41	1	11	45	1.49
44911598--44911630	16	2.1	16	100	0	66	30	0	24	45	1.53
44911564--44911661	50	2.0	50	86	8	137	40	0	15	43	1.46
44911387--44911894	180	2.9	180	83	7	653	41	1	11	45	1.49
44911622--44911894	62	4.5	60	80	9	304	41	1	10	45	1.50
44911718--44911768	22	2.4	22	86	3	77	41	1	9	47	1.48
44911740--44911815	34	2.1	37	85	7	104	42	1	13	43	1.52
44912815--44912841	14	1.9	14	100	0	54	44	14	25	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44914035--44914092	16	3.6	16	80	0	62	25	18	43	12	1.85
44914034--44914106	32	2.4	30	76	15	76	26	20	41	12	1.87
44914352--44914633	84	3.4	83	81	4	309	32	23	17	26	1.97
44914955--44914984	6	4.8	6	95	4	51	30	0	0	70	0.88
44914925--44914977	20	2.6	19	82	8	61	26	1	5	66	1.25
44914936--44914984	19	2.6	20	84	9	59	26	2	2	69	1.10
44915318--44915350	17	1.9	17	93	0	57	36	36	0	27	1.57
44915420--44915450	14	2.1	15	94	5	55	38	32	0	29	1.57
44915649--44915713	14	4.6	14	72	14	53	32	44	0	23	1.53
44915694--44915734	21	2.0	21	85	9	57	34	41	0	24	1.55
44916222--44916649	114	3.7	114	87	3	617	28	22	19	30	1.98
44916222--44916849	229	2.8	229	80	9	648	28	22	18	30	1.98
44916554--44916745	96	2.0	96	93	2	332	27	22	20	29	1.98
44916440--44916849	210	2.0	209	90	0	640	27	23	19	29	1.98
44918201--44918239	21	1.9	21	94	5	71	56	10	7	25	1.59
44920268--44920311	19	2.2	20	84	4	54	27	40	2	29	1.68
44920792--44920824	15	2.3	15	94	5	59	39	6	6	48	1.53
44921100--44921131	15	2.1	15	94	0	55	50	0	9	40	1.35
44921115--44921357	37	6.9	36	75	16	149	47	9	2	41	1.48
44921146--44921246	20	5.2	20	79	11	129	50	6	3	38	1.48
44921093--44921400	57	5.4	56	81	10	310	46	9	2	41	1.50
44921133--44921338	30	7.1	30	72	14	189	47	9	1	41	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44921115--44921403	117	2.5	117	80	8	308	47	8	2	41	1.49
44921423--44921488	16	3.8	16	72	18	60	48	18	0	33	1.48
44921411--44921482	37	1.9	37	97	0	135	48	18	0	33	1.48
44921448--44921495	25	1.9	25	91	0	78	45	18	0	35	1.50
44921460--44921507	25	1.9	25	86	0	69	41	20	0	37	1.53
44921527--44921628	9	11.3	9	73	15	77	43	22	1	32	1.65
44921574--44921624	25	2.0	25	88	0	75	47	21	1	29	1.62
44927022--44927157	66	2.1	66	90	0	209	43	18	26	11	1.84
44927525--44927650	44	2.9	43	82	6	155	31	17	25	25	1.97
44927526--44927685	87	1.8	86	81	4	196	28	18	25	26	1.98
44928297--44928345	18	2.6	19	81	12	66	73	0	2	24	0.94
44929489--44929578	19	4.4	20	77	14	94	55	5	0	38	1.23
44930679--44930727	20	2.4	20	83	16	57	51	4	0	44	1.20
44931028--44931085	20	2.9	19	72	10	53	46	34	0	18	1.50
44931086--44931295	106	2.0	106	90	1	332	42	7	20	29	1.78
44931376--44931420	24	1.9	24	86	4	65	48	11	2	37	1.51
44936719--44936773	24	2.2	26	81	12	71	45	0	1	52	1.11
44936897--44937001	44	2.5	40	76	15	113	31	28	4	35	1.78
44936914--44937004	45	2.0	45	87	2	130	34	27	5	32	1.80
44936985--44937052	16	4.2	16	92	0	100	36	33	0	29	1.58
44938004--44938047	19	2.3	19	84	0	61	25	11	2	61	1.41
44942594--44942723	41	3.2	41	86	1	190	33	16	28	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44946472--44946516	23	2.0	23	81	0	54	77	6	15	0	0.96
44946481--44946513	17	1.9	17	93	0	57	72	6	21	0	1.05
44959579--44959626	20	2.3	21	89	7	71	41	18	25	14	1.88
44967556--44967582	12	2.2	12	100	0	54	55	14	0	29	1.40
44971460--44971635	50	3.5	50	84	5	221	36	14	14	35	1.86
44976106--44976136	7	4.4	7	91	0	53	74	0	22	3	0.96
44977474--44977532	31	2.0	29	83	6	73	13	11	11	62	1.54
44994309--44994429	32	3.5	33	67	21	95	38	8	6	46	1.60
44994328--44994439	35	3.1	35	65	22	97	37	7	6	49	1.56
44994342--44994480	40	3.7	39	68	20	114	38	5	4	51	1.46
44994296--44994470	72	2.4	72	99	0	341	39	6	5	48	1.52
44994512--44994663	43	3.5	43	86	3	198	25	17	25	30	1.97
44994503--44994687	87	2.1	87	77	7	187	27	19	23	29	1.98
45005734--45005808	20	3.8	20	74	13	64	25	18	22	33	1.97
45007227--45007275	20	2.5	20	79	0	53	34	14	20	30	1.92
45010148--45010183	18	2.0	19	89	10	58	72	5	5	16	1.23
45010238--45010272	14	2.4	15	90	4	54	28	14	0	57	1.38
45010887--45010971	41	2.1	41	93	0	143	25	23	23	27	2.00
45015637--45015689	14	3.9	13	75	7	52	24	1	1	71	1.06
45019623--45019665	15	2.9	14	86	13	52	81	0	0	18	0.69
45019619--45019664	17	2.6	17	83	13	58	78	0	0	21	0.76
45019624--45019665	9	4.7	9	80	11	50	83	0	0	16	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45020223--45020253	15	2.0	16	93	6	55	16	0	6	77	0.97
45027414--45027455	15	2.7	15	85	10	50	35	2	0	61	1.09
45027436--45027472	5	7.6	5	93	6	67	40	0	0	59	0.97
45027416--45027477	17	3.5	17	83	14	72	38	1	0	59	1.07
45027416--45027477	19	3.0	21	77	15	67	38	1	0	59	1.07
45027705--45027739	16	2.2	16	89	0	52	65	0	34	0	0.93
45028645--45028703	27	2.2	28	78	9	68	23	0	28	47	1.52
45032145--45032186	15	2.7	15	85	10	50	35	2	0	61	1.09
45032167--45032203	5	7.6	5	93	6	67	40	0	0	59	0.97
45032147--45032208	17	3.5	17	83	14	72	38	1	0	59	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153