genome.fa.s18.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  35  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12084808--12084847	18	2.2	18	86	8	55	20	0	12	67	1.22
12085308--12085358	24	2.2	23	89	3	75	41	7	0	50	1.31
12085397--12085446	21	2.3	22	80	10	59	46	0	6	48	1.27
12085841--12085895	21	2.6	21	91	0	92	21	9	40	29	1.84
12086158--12086209	22	2.3	22	77	9	52	50	5	1	42	1.37
12089462--12089608	64	2.3	64	97	0	285	36	8	13	41	1.76
12090241--12090272	15	2.1	15	94	0	55	53	0	15	31	1.43
12090256--12091000	379	2.0	379	99	0	1481	24	16	17	41	1.89
12093298--12093341	21	2.1	21	100	0	88	9	15	31	43	1.79
12095325--12095391	30	2.2	31	81	7	75	26	8	2	61	1.41
12096829--12096865	19	2.0	18	89	5	56	75	2	0	21	0.92
12098362--12098565	94	2.2	94	90	0	327	26	13	17	42	1.86
12098366--12098524	50	3.3	49	69	15	143	26	11	17	44	1.84
12098538--12098753	94	2.3	93	80	4	227	29	19	16	34	1.94
12098683--12099060	44	8.3	43	68	13	188	29	21	16	33	1.95
12098611--12099074	138	3.4	137	86	3	644	29	20	16	33	1.94
12099692--12099902	117	1.8	117	89	0	332	23	10	23	42	1.85
12100515--12100586	33	2.2	33	85	5	92	27	2	45	23	1.66
12100757--12100857	51	2.0	51	96	0	184	27	7	27	36	1.85
12101156--12101224	9	7.7	9	79	6	77	44	21	7	26	1.78
12101155--12101224	27	2.6	27	81	0	95	45	21	7	25	1.77
12101374--12101426	18	2.9	18	85	2	70	9	1	47	41	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12108421--12108562	32	4.4	33	80	12	161	27	4	19	49	1.66
12108427--12108562	64	2.1	64	95	0	245	27	4	19	48	1.68
12108587--12108630	16	2.7	16	78	3	52	31	0	22	45	1.53
12108931--12109199	94	2.9	93	85	6	337	28	22	17	31	1.97
12111861--12111936	9	8.4	9	80	0	80	43	22	6	27	1.78
12111861--12111936	27	2.8	27	86	4	100	43	22	6	27	1.78
12114575--12114861	56	5.1	57	80	4	282	42	16	11	28	1.83
12114583--12114861	113	2.5	113	84	2	330	42	16	11	29	1.83
12114615--12114861	57	4.4	56	82	4	248	43	16	10	29	1.81
12114928--12114996	33	2.1	33	100	0	138	27	17	14	40	1.88
12115696--12115739	18	2.4	18	92	0	70	11	2	45	40	1.53
12116155--12116186	15	2.1	16	88	11	50	18	18	9	53	1.71
12127574--12127631	19	3.1	18	82	7	71	37	0	3	58	1.15
12132755--12132805	23	2.2	23	82	6	59	43	17	9	29	1.81
12135914--12135952	17	2.3	17	86	8	53	33	17	28	20	1.96
12138570--12138599	15	1.9	16	93	6	53	23	6	3	66	1.30
12167168--12167246	11	8.0	10	68	20	51	64	2	5	27	1.27
12169361--12169432	30	2.4	30	86	8	103	37	1	1	59	1.15
12172907--12172940	16	2.1	17	94	5	61	11	5	14	67	1.39
12184379--12184404	7	3.7	7	100	0	52	30	0	53	15	1.42
12187204--12187257	26	2.0	26	83	16	67	35	14	1	48	1.55
12187809--12187880	30	2.4	30	79	4	83	37	6	6	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12197456--12197484	13	2.1	14	93	6	51	0	24	0	75	0.80
12200668--12200729	25	2.4	25	80	17	58	38	6	0	54	1.26
12202241--12202365	50	2.5	50	77	0	115	28	23	26	21	1.99
12202307--12202426	49	2.4	49	79	4	134	31	20	24	24	1.98
12205574--12205599	12	2.2	12	100	0	52	26	50	7	15	1.71
12207026--12207126	21	4.8	21	65	4	51	20	20	14	43	1.87
12207031--12207142	42	2.7	42	80	2	118	20	20	16	41	1.90
12211718--12211750	13	2.5	13	95	0	57	81	0	18	0	0.68
12225796--12225835	16	2.6	15	84	4	53	65	7	2	25	1.32
12225860--12225911	21	2.5	21	84	6	61	55	7	1	34	1.39
12226262--12226346	33	2.6	34	77	19	90	45	2	2	49	1.27
12228950--12228988	20	2.0	20	89	0	60	74	2	23	0	0.94
12230302--12230339	19	2.0	19	89	0	58	50	5	5	39	1.48
12237669--12237710	19	2.2	20	86	4	59	16	16	16	50	1.79
12240528--12240552	13	1.9	13	100	0	50	8	0	24	68	1.16
12242428--12242536	41	2.6	41	91	1	164	23	22	28	25	1.99
12243333--12243384	27	1.9	27	100	0	104	38	11	25	25	1.89
12257333--12257384	18	2.9	18	91	0	77	21	30	7	40	1.81
12257772--12257828	25	2.3	23	81	18	71	40	0	7	52	1.28
12259377--12259776	126	3.2	125	87	3	527	29	17	15	36	1.91
12259833--12259962	34	3.8	33	76	13	136	43	16	0	40	1.48
12259895--12259972	34	2.5	28	71	23	66	43	14	0	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12259987--12260056	28	2.5	27	88	6	104	45	28	0	25	1.54
12260039--12260076	16	2.4	16	86	4	51	52	34	0	13	1.40
12260215--12260437	43	5.2	43	86	0	295	24	31	18	25	1.98
12260219--12260413	86	2.3	86	94	0	336	24	32	17	25	1.97
12262790--12262938	3	49.7	3	100	0	298	67	0	0	32	0.91
12264743--12264979	41	5.8	41	89	0	357	28	29	20	21	1.98
12265014--12265167	40	3.8	40	82	5	186	18	22	22	36	1.95
12266465--12266543	31	2.5	31	89	8	115	60	1	3	34	1.23
12272492--12272718	112	2.0	112	99	0	445	25	22	26	25	2.00
12274990--12275033	22	2.0	23	86	4	63	50	0	20	29	1.49
12275027--12275169	49	2.9	49	90	5	216	60	1	11	26	1.40
12275202--12275233	16	1.9	17	93	6	57	68	0	15	15	1.21
12275214--12275298	41	2.1	40	89	6	127	51	4	22	21	1.66
12275553--12275608	22	2.7	20	78	21	53	62	0	7	30	1.22
12276261--12276325	3	21.3	3	77	3	67	55	1	41	1	1.18
12277763--12277800	20	1.9	20	88	0	58	55	0	13	31	1.38
12277755--12277965	100	2.1	101	91	1	343	54	3	8	34	1.47
12277857--12277903	20	2.3	20	85	0	67	55	0	8	36	1.31
12277888--12277982	16	6.1	15	70	21	63	55	4	6	33	1.44
12277911--12278008	46	2.2	45	96	1	178	57	4	5	33	1.40
12277806--12277998	46	4.0	48	75	14	180	55	3	6	34	1.44
12278948--12279004	19	2.7	22	76	15	66	43	17	3	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12278938--12278995	22	2.6	22	81	7	64	44	17	1	36	1.59
12279222--12279263	8	5.4	8	80	5	50	23	2	26	47	1.64
12281524--12281976	153	2.9	154	87	3	630	32	10	7	49	1.66
12281838--12282075	131	1.8	131	86	1	343	28	12	8	50	1.68
12282218--12282272	26	2.1	27	82	3	67	56	9	3	30	1.48
12282362--12282448	10	9.1	10	78	12	58	0	28	1	70	0.95
12282362--12282457	20	5.0	20	75	12	76	0	29	1	69	0.95
12282372--12282450	36	2.2	37	86	6	117	0	27	1	70	0.95
12282382--12282457	26	3.0	25	83	9	84	0	26	0	73	0.83
12282510--12282546	16	2.3	16	95	0	65	37	2	35	24	1.70
12282526--12282625	46	2.3	44	83	11	120	29	4	30	37	1.76
12282526--12282623	44	2.2	46	85	7	130	29	4	28	37	1.76
12283698--12283801	49	2.1	49	87	0	145	50	9	8	30	1.65
12286044--12286160	29	4.1	29	71	14	118	29	8	9	52	1.63
12294417--12294462	22	2.1	23	84	8	60	47	6	2	43	1.41
12295132--12295184	16	3.3	16	83	0	70	41	3	30	24	1.72
12295166--12295258	44	2.1	46	91	4	154	29	4	30	36	1.77
12295166--12295271	39	2.5	44	83	11	132	30	3	31	34	1.75
12295420--12295551	18	6.9	18	69	21	90	55	2	1	40	1.22
12295454--12295615	61	2.7	60	69	23	144	50	4	2	42	1.37
12303217--12303291	38	2.0	38	89	0	114	40	17	10	32	1.84
12305925--12305949	13	1.9	13	100	0	50	36	16	0	48	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12326486--12326700	96	2.2	97	88	1	308	42	2	16	38	1.63
12328316--12328370	15	3.4	16	80	16	53	50	1	0	47	1.11
12328336--12328370	18	2.0	17	88	5	52	54	0	0	45	0.99
12328319--12328596	119	2.3	120	90	2	436	48	5	1	44	1.35
12332936--12333298	105	3.4	107	92	3	601	30	15	14	38	1.89
12334076--12334127	16	3.2	16	94	0	95	26	0	34	38	1.57
12334343--12334397	15	3.4	16	80	16	53	50	1	0	47	1.11
12334363--12334397	18	2.0	17	88	5	52	54	0	0	45	0.99
12334483--12334517	18	2.0	17	88	5	52	54	0	0	45	0.99
12334378--12334568	61	3.2	60	67	20	155	48	5	2	43	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153