genome.fa.s18.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  131  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41229845--41230095	86	2.9	86	98	0	484	47	12	5	33	1.65
41233554--41233630	37	2.1	37	97	0	145	40	12	18	28	1.87
41234228--41234313	45	1.9	45	95	0	154	36	30	15	18	1.92
41239355--41239406	19	2.5	20	84	12	61	57	3	0	38	1.17
41239794--41239818	7	3.6	7	100	0	50	44	28	0	28	1.55
41244507--41244556	23	2.1	25	81	7	59	42	8	0	50	1.32
41244691--41244715	4	6.2	4	100	0	50	24	0	0	76	0.80
41246059--41246116	29	2.0	29	96	0	107	50	3	25	20	1.64
41246061--41246124	29	2.2	29	88	5	94	51	3	28	17	1.60
41247361--41247488	62	2.1	61	89	4	195	14	15	21	49	1.79
41249796--41250210	109	3.8	109	88	1	584	32	18	16	32	1.93
41250738--41250818	39	2.0	41	85	9	112	54	8	6	30	1.56
41252654--41252808	44	3.5	44	78	1	132	30	25	16	27	1.97
41252996--41253280	147	1.9	148	88	0	428	30	21	17	30	1.96
41253259--41253376	44	2.7	45	85	5	145	32	19	18	29	1.96
41253546--41253908	86	4.1	87	81	4	365	26	23	20	29	1.99
41254766--41255141	97	3.9	97	94	0	610	47	9	15	27	1.75
41255422--41255497	19	3.9	18	80	13	80	0	17	2	80	0.83
41255426--41255503	5	15.8	5	76	14	65	0	17	2	79	0.84
41255423--41255515	25	3.8	24	78	8	89	0	16	3	80	0.83
41255423--41255515	38	2.5	38	83	10	111	0	16	3	80	0.83
41259417--41259829	109	3.8	109	85	2	564	34	17	16	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41260357--41260447	39	2.2	40	81	12	114	54	8	6	29	1.56
41260556--41260662	39	2.7	39	81	2	117	47	1	10	40	1.48
41260863--41260971	56	1.9	56	98	0	209	37	14	29	18	1.90
41262622--41262677	28	2.0	28	100	0	112	25	10	10	53	1.67
41263607--41263634	6	4.7	6	100	0	56	14	14	0	71	1.15
41265060--41265085	13	2.0	13	100	0	52	15	15	7	61	1.55
41278680--41278713	17	1.9	18	88	5	52	70	0	2	26	1.01
41281209--41281314	54	2.0	54	82	0	131	23	3	48	24	1.68
41283514--41283921	161	2.6	159	80	5	491	36	16	12	34	1.87
41284073--41284221	69	2.2	69	91	0	235	25	7	17	49	1.72
41285553--41285771	114	1.9	114	85	6	303	47	15	9	27	1.77
41286245--41286293	18	2.7	17	81	9	53	28	2	4	65	1.22
41287010--41287065	29	1.9	29	85	7	78	33	12	10	42	1.77
41289766--41290018	58	4.3	58	94	3	411	26	24	17	31	1.97
41290498--41290612	45	2.6	45	83	4	126	29	24	19	26	1.98
41290684--41290907	44	5.2	44	79	7	237	29	25	17	27	1.98
41290707--41290863	82	1.9	82	90	0	251	27	26	17	28	1.98
41290709--41290946	126	1.9	126	92	0	404	28	25	18	27	1.98
41290958--41291533	88	6.5	88	95	0	1008	20	24	27	27	1.99
41291161--41291475	44	7.2	44	66	12	216	20	26	27	25	1.99
41296926--41296963	16	2.4	16	83	12	51	78	0	0	21	0.74
41299040--41299102	32	2.0	31	84	3	81	57	3	1	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41299063--41299164	51	2.0	51	94	0	177	44	1	1	51	1.23
41299914--41299965	26	2.0	26	100	0	104	26	34	7	30	1.85
41302179--41302248	31	2.3	31	82	5	79	21	15	5	57	1.59
41302841--41302893	18	3.0	17	76	17	63	28	1	5	64	1.27
41302833--41302908	35	2.2	35	83	4	91	30	1	3	64	1.20
41321345--41321389	21	2.1	22	84	12	58	68	6	8	15	1.36
41324177--41324455	35	8.1	35	85	4	377	42	17	21	18	1.89
41324187--41324456	69	3.9	69	92	1	425	41	17	22	19	1.91
41324177--41324455	104	2.7	105	87	4	397	42	17	21	18	1.89
41325066--41325222	82	1.9	81	89	3	244	24	13	22	38	1.90
41325686--41325745	27	2.2	27	93	0	102	25	8	31	35	1.85
41325693--41325747	27	2.0	27	100	0	110	23	7	32	36	1.82
41331067--41331096	5	6.0	5	100	0	60	40	0	20	40	1.52
41334983--41335034	21	2.4	20	77	22	52	59	3	5	30	1.39
41339084--41339129	22	2.0	24	87	8	69	26	4	4	65	1.30
41345741--41345784	23	2.0	21	82	8	52	36	2	2	59	1.23
41345741--41345791	22	2.4	21	80	6	57	39	1	1	56	1.22
41346584--41346961	125	3.0	125	92	0	621	28	16	24	30	1.96
41347956--41348001	14	3.2	14	81	3	56	56	8	2	32	1.42
41348019--41348048	13	2.3	13	100	0	60	46	20	0	33	1.51
41349994--41350397	132	3.1	132	95	0	729	27	23	18	30	1.98
41350385--41350962	179	3.2	178	92	0	922	25	24	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41350385--41350948	90	6.3	90	90	1	855	25	25	19	30	1.98
41350399--41350978	44	13.0	44	70	10	345	25	24	19	30	1.98
41358999--41359038	20	2.0	20	95	0	71	32	15	22	30	1.94
41366795--41367185	45	8.8	45	91	4	564	27	0	24	47	1.54
41367162--41367201	15	2.8	14	85	7	53	27	0	25	47	1.52
41366797--41367903	22	52.6	21	68	21	294	26	0	26	47	1.53
41367162--41367201	7	5.7	7	85	8	55	27	0	25	47	1.52
41367083--41367835	162	4.6	162	98	0	1443	25	0	27	47	1.52
41367324--41367363	15	2.8	14	85	7	53	27	0	25	47	1.52
41367324--41367363	7	5.7	7	85	8	55	27	0	25	47	1.52
41367486--41367525	15	2.8	14	85	7	53	27	0	25	47	1.52
41367486--41367525	7	5.7	7	85	8	55	27	0	25	47	1.52
41367648--41367687	15	2.8	14	85	7	53	27	0	25	47	1.52
41367648--41367687	7	5.7	7	85	8	55	27	0	25	47	1.52
41367732--41367904	23	7.7	22	82	7	181	24	0	24	50	1.49
41367732--41367904	67	2.6	66	86	5	188	24	0	24	50	1.49
41367732--41367904	90	1.9	90	94	4	305	24	0	24	50	1.49
41368374--41368416	18	2.4	18	84	0	59	46	9	27	16	1.77
41369064--41369089	7	3.7	7	100	0	52	57	15	0	26	1.38
41370303--41370357	22	2.4	22	84	6	65	43	3	30	21	1.70
41372577--41372696	60	2.0	60	96	0	222	39	14	15	31	1.86
41373644--41373668	13	1.9	13	100	0	50	24	36	0	40	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41373885--41374161	112	2.5	112	79	4	299	29	18	23	28	1.98
41374168--41374458	113	2.5	113	82	6	311	30	19	24	25	1.98
41374300--41374656	197	1.8	197	85	3	504	32	18	23	26	1.97
41376818--41377491	9	76.4	9	77	9	660	51	15	0	33	1.47
41377135--41377218	23	3.7	22	75	6	78	51	16	0	32	1.45
41377462--41377498	7	5.0	7	87	12	56	54	16	0	29	1.43
41383146--41383310	42	4.0	41	84	3	186	33	22	17	26	1.96
41386089--41386131	20	2.2	20	100	0	86	58	11	9	20	1.61
41392347--41392392	21	2.2	21	84	7	58	28	8	50	13	1.70
41400947--41401169	40	5.6	40	86	3	236	24	20	28	26	1.99
41401022--41401204	79	2.3	80	81	1	217	25	20	28	25	1.99
41415763--41415808	24	1.9	24	95	0	83	34	13	17	34	1.88
41415883--41416067	34	5.4	34	85	2	235	29	25	16	28	1.97
41416791--41417016	43	5.3	43	81	4	251	25	24	18	31	1.97
41417366--41417414	21	2.3	21	89	0	71	8	38	18	34	1.80
41422874--41422910	7	5.0	7	87	12	56	29	0	16	54	1.43
41422881--41423387	9	57.4	9	76	11	462	33	0	15	50	1.49
41428326--41429038	23	31.3	23	72	14	458	29	5	23	40	1.78
41428335--41428841	91	5.6	91	81	5	517	29	5	23	41	1.76
41428684--41429038	114	3.1	112	81	6	371	29	6	23	40	1.79
41428328--41429038	91	7.8	92	78	7	501	29	5	23	41	1.78
41428403--41429001	273	2.2	274	94	1	1042	30	5	23	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41428410--41429001	137	4.3	137	95	1	1037	29	5	23	41	1.76
41429923--41430043	43	2.8	43	91	2	181	20	18	33	28	1.96
41433056--41433133	39	2.0	39	97	0	147	33	8	7	50	1.63
41434488--41434918	216	2.0	216	96	0	790	29	14	21	33	1.94
41434764--41435350	296	2.0	296	96	0	1075	31	15	20	33	1.94
41437088--41437121	17	1.9	17	88	5	50	82	5	2	8	0.93
41437088--41437121	9	3.9	9	88	3	52	82	5	2	8	0.93
41447660--41447703	20	2.2	20	95	0	79	36	15	22	25	1.94
41450657--41450767	58	1.9	58	94	0	195	23	25	19	31	1.98
41450995--41451391	199	2.0	199	92	0	659	46	17	16	18	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153