genome.fa.s18.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  127  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40248480--40248605	25	5.1	25	76	4	85	31	21	26	20	1.98
40248512--40248616	25	4.2	25	80	4	104	32	17	28	21	1.96
40249983--40250093	47	2.4	47	84	6	154	35	23	16	25	1.95
40250856--40250884	4	7.2	4	100	0	58	0	24	0	75	0.80
40252941--40253143	42	4.8	42	93	1	327	32	22	22	23	1.98
40252943--40253239	42	7.1	42	87	1	209	30	21	20	27	1.98
40252941--40253230	126	2.3	126	84	2	350	30	21	21	27	1.98
40253554--40253624	21	3.4	21	80	0	79	2	45	18	33	1.64
40259074--40259518	18	25.5	18	71	24	135	35	0	19	44	1.51
40259217--40259509	72	4.1	72	78	18	319	36	0	18	45	1.50
40259079--40259528	53	8.6	52	91	5	582	35	0	18	45	1.50
40259368--40259490	9	13.9	9	66	27	50	36	0	19	43	1.51
40259788--40259858	13	5.5	13	86	0	106	50	2	7	39	1.44
40259787--40259858	26	2.8	26	100	0	144	50	2	6	40	1.44
40259863--40259906	17	2.6	17	100	0	88	36	0	15	47	1.46
40261250--40261289	11	3.7	11	96	3	73	27	25	10	37	1.88
40262489--40263193	84	8.4	84	98	0	1329	28	19	20	31	1.97
40263577--40263602	12	2.2	12	100	0	52	19	34	7	38	1.80
40264215--40264580	112	3.3	112	92	1	583	27	28	18	25	1.98
40264528--40264604	40	1.9	40	94	0	136	23	28	15	32	1.95
40270974--40271014	22	1.9	22	90	5	66	46	4	9	39	1.58
40283776--40283816	22	2.0	21	85	9	57	53	4	17	24	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40284944--40285102	79	2.0	79	93	0	273	32	15	13	38	1.85
40285200--40285415	42	5.1	42	86	1	254	22	16	24	37	1.93
40285198--40285415	84	2.6	85	81	5	280	22	16	23	38	1.93
40285198--40285461	126	2.1	126	82	3	307	23	15	23	37	1.93
40285849--40285888	15	2.7	15	84	0	53	35	15	0	50	1.44
40286355--40286397	18	2.4	18	84	0	50	53	0	9	37	1.33
40288398--40288450	19	2.7	19	82	2	70	18	26	16	37	1.93
40301273--40301315	23	1.9	22	85	4	59	39	23	4	32	1.75
40307547--40307896	27	13.0	27	80	2	337	42	20	16	20	1.89
40307550--40307893	81	4.3	81	83	3	390	43	20	15	20	1.88
40307549--40307924	134	2.8	135	77	3	321	41	20	16	20	1.90
40310165--40310260	25	3.8	25	77	8	88	20	23	22	32	1.98
40315693--40315733	21	2.0	20	86	13	57	21	4	24	48	1.69
40322710--40322742	15	2.1	16	88	5	50	24	0	15	60	1.35
40323957--40324104	25	6.0	25	77	8	126	25	20	20	34	1.96
40328240--40328266	6	4.5	6	100	0	54	14	33	51	0	1.43
40328637--40328714	39	2.0	39	90	5	122	28	6	37	28	1.81
40328745--40328781	18	2.1	18	100	0	74	43	8	32	16	1.77
40330391--40330416	13	2.0	13	100	0	52	15	30	7	46	1.74
40333102--40333196	18	5.6	18	75	20	87	9	30	5	54	1.54
40333122--40333176	16	3.4	16	72	22	51	7	29	5	58	1.48
40333102--40333196	33	2.8	33	91	3	145	9	30	5	54	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40333125--40333178	15	3.4	15	75	22	56	9	29	5	55	1.54
40333223--40333288	33	2.0	33	85	5	89	9	18	3	69	1.28
40340880--40340909	4	7.5	4	92	0	51	23	30	0	46	1.52
40350158--40350271	9	12.7	9	72	3	86	28	34	12	24	1.92
40350158--40350252	27	3.5	27	88	0	136	28	33	11	26	1.91
40350158--40350271	27	4.2	27	86	2	104	28	34	12	24	1.92
40350387--40350470	41	2.0	41	93	0	141	30	10	10	47	1.72
40352092--40352166	37	2.0	37	97	0	141	24	14	32	29	1.95
40353579--40353673	27	3.5	27	79	0	82	28	28	12	30	1.93
40356447--40356560	20	5.7	19	79	7	93	27	24	16	31	1.96
40356457--40356554	40	2.5	40	79	3	108	28	23	15	32	1.95
40358078--40358117	14	2.7	16	81	18	59	70	10	15	5	1.32
40359195--40359229	18	1.9	18	88	11	54	68	5	14	11	1.37
40361005--40361122	10	12.0	9	69	17	67	25	27	18	28	1.98
40361003--40361129	20	6.3	20	90	3	168	24	26	18	30	1.98
40372242--40372275	8	4.1	8	88	7	50	88	0	2	8	0.62
40372247--40372275	9	3.3	9	90	9	51	89	0	0	10	0.48
40372242--40372275	17	2.0	17	94	0	59	88	0	2	8	0.62
40374973--40375314	168	2.0	168	98	0	666	27	18	23	30	1.98
40378465--40378546	27	2.7	30	87	10	107	15	21	30	31	1.95
40378464--40378655	105	1.8	105	90	0	312	20	21	27	29	1.98
40381159--40381252	49	1.9	49	93	0	161	36	26	22	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40384352--40384387	11	3.4	11	88	3	56	63	8	5	22	1.43
40385625--40385666	22	2.0	21	90	4	66	33	0	11	54	1.37
40386885--40386947	28	2.3	28	94	2	110	31	25	22	20	1.98
40387300--40387700	27	14.9	27	78	2	358	19	15	21	43	1.87
40387629--40387692	25	2.5	25	84	5	74	20	14	17	48	1.81
40395486--40395560	33	2.2	34	90	2	116	42	12	6	38	1.68
40396675--40396727	27	2.0	27	88	0	79	7	26	0	66	1.18
40397559--40397584	11	2.4	11	100	0	52	57	0	23	19	1.40
40412162--40412201	21	1.9	21	94	0	71	2	55	0	42	1.13
40412164--40412201	12	3.2	12	88	0	58	2	55	0	42	1.14
40416229--40416268	20	2.0	20	95	0	71	55	27	10	7	1.60
40417575--40417605	2	15.5	2	100	0	62	0	48	0	51	1.00
40417751--40417805	25	2.2	25	86	0	74	27	20	36	16	1.93
40417956--40418095	41	3.5	40	71	4	129	21	20	16	41	1.90
40418692--40418726	16	2.1	18	89	10	56	37	0	22	40	1.55
40424401--40424505	25	4.2	26	69	13	69	20	24	18	36	1.95
40424558--40424614	23	2.5	23	97	0	105	24	28	15	31	1.96
40431932--40431971	20	2.0	20	95	0	71	42	10	15	32	1.79
40438049--40438114	14	4.7	14	78	10	55	50	28	1	19	1.57
40438057--40438114	7	8.3	7	81	7	64	50	29	0	20	1.49
40438043--40438114	28	2.6	28	86	0	99	50	30	1	18	1.55
40444518--40444574	28	2.0	28	96	0	105	42	14	10	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40449114--40449151	19	2.0	20	89	5	60	28	5	5	60	1.40
40453052--40453119	27	2.5	27	80	0	82	19	17	25	38	1.93
40461324--40461366	21	2.0	22	86	4	61	44	2	4	48	1.36
40469749--40469781	1	33.0	1	93	0	57	96	0	3	0	0.20
40471342--40472138	1	797.0	1	100	0	1594	0	0	0	100	0.00
40475303--40475328	3	8.7	3	100	0	52	69	0	0	30	0.89
40480470--40481309	57	14.8	57	98	0	1558	38	11	8	41	1.71
40486953--40487076	19	6.2	21	79	12	75	41	13	6	37	1.70
40486953--40487010	22	2.6	22	81	7	64	41	17	5	36	1.72
40486966--40487080	19	5.8	19	86	4	140	40	13	6	39	1.72
40487823--40487859	18	2.1	18	89	0	56	13	32	0	54	1.40
40500755--40501722	84	11.5	84	99	0	1909	38	26	14	20	1.91
40501731--40501917	51	3.7	51	80	7	211	29	28	17	24	1.97
40501729--40501913	101	1.8	101	87	3	273	30	28	17	23	1.97
40518154--40518227	24	3.2	24	66	11	64	40	10	21	27	1.86
40518119--40518242	45	2.7	45	87	3	169	40	15	20	24	1.90
40518715--40518965	28	9.0	27	75	13	197	53	5	15	25	1.62
40518720--40518965	55	4.4	55	78	11	225	54	5	14	25	1.60
40518720--40518925	84	2.5	83	86	7	285	56	4	14	24	1.58
40519863--40520194	86	4.0	79	82	8	249	46	11	12	30	1.76
40519899--40520210	86	3.7	85	85	3	362	45	11	11	31	1.77
40523331--40523374	17	2.5	18	78	14	56	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40523856--40524075	110	2.0	110	99	0	431	42	8	4	44	1.55
40529187--40529220	15	2.3	15	94	0	59	23	20	23	32	1.98
40529290--40529363	29	2.6	29	85	4	98	31	25	18	24	1.98
40534428--40534507	41	2.0	41	90	5	126	26	20	21	32	1.97
40534428--40534536	41	2.7	41	82	2	121	27	19	21	32	1.97
40542652--40542739	43	2.0	43	91	4	142	39	14	13	31	1.85
40543816--40543867	28	1.9	26	84	7	68	34	0	1	63	1.06
40544203--40544249	11	4.3	11	76	10	51	19	0	8	72	1.10
40552619--40552652	3	11.3	3	100	0	68	67	0	0	32	0.91
40555466--40555512	19	2.6	18	93	3	76	21	0	4	74	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153