genome.fa.s18.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  138  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43306149--43306182	16	2.1	16	100	0	68	47	0	0	52	1.00
43315510--43316352	50	16.8	50	91	0	1344	26	21	30	20	1.98
43315510--43316352	100	8.4	100	98	0	1560	26	21	30	20	1.98
43317019--43317173	78	2.0	78	97	0	292	44	12	20	23	1.84
43323045--43323191	75	2.0	75	94	0	258	38	17	21	22	1.93
43323453--43324445	50	19.8	50	97	0	1851	24	22	33	20	1.97
43328403--43328488	38	2.3	38	95	4	156	51	10	15	23	1.74
43329802--43329840	20	1.9	21	89	5	62	51	2	12	33	1.54
43330801--43330830	16	1.9	16	93	6	53	50	20	0	30	1.49
43331276--43331317	20	2.2	19	87	12	59	16	16	2	64	1.40
43332098--43332143	14	3.1	14	87	12	58	73	2	21	2	1.04
43339813--43339852	15	2.6	16	88	8	64	75	0	25	0	0.81
43341439--43341487	25	1.9	26	84	12	66	30	0	22	46	1.52
43346269--43346358	12	7.2	13	74	18	59	51	0	2	46	1.13
43346295--43346323	15	1.9	15	100	0	58	44	0	0	55	0.99
43346275--43346366	26	3.5	26	69	10	62	47	1	2	48	1.20
43347055--43347108	22	2.5	22	78	3	65	59	11	16	12	1.61
43347066--43347106	21	1.9	22	90	5	66	63	9	12	14	1.52
43349383--43349435	26	2.0	26	96	0	97	35	9	26	28	1.87
43354443--43354504	24	2.6	24	72	10	63	40	0	17	41	1.50
43359851--43360028	27	6.6	27	83	3	205	26	15	28	29	1.96
43359852--43360007	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43359848--43360028	82	2.2	81	83	2	229	27	15	27	29	1.96
43364990--43365046	30	2.0	27	83	12	71	45	5	24	24	1.74
43372014--43372048	16	2.2	16	90	10	54	51	2	14	31	1.57
43372760--43372864	40	2.6	41	82	8	126	22	21	26	28	1.99
43382263--43382322	20	3.0	20	71	24	63	33	0	28	38	1.57
43382703--43382764	23	2.7	23	82	2	72	17	16	14	51	1.76
43388960--43389159	27	7.4	27	82	5	156	40	19	17	23	1.92
43388960--43389105	54	2.7	53	83	6	186	42	19	15	22	1.89
43388971--43389159	54	3.5	53	80	7	177	39	19	18	22	1.93
43389053--43389176	27	4.6	27	78	10	121	33	18	21	25	1.96
43389092--43389176	27	3.2	26	88	5	125	32	16	24	25	1.96
43389179--43389252	26	2.8	26	87	2	103	35	18	21	24	1.96
43389271--43389403	24	5.5	24	86	0	149	27	6	21	45	1.75
43389486--43389563	27	2.9	26	81	5	84	25	25	16	32	1.96
43389578--43389760	61	2.9	63	83	8	230	22	19	20	38	1.94
43389578--43389761	93	2.0	93	92	2	307	22	19	20	38	1.93
43389578--43389761	32	5.8	32	86	8	236	22	19	20	38	1.93
43389771--43389835	22	3.0	21	77	4	58	16	23	18	41	1.90
43391093--43391160	33	2.1	33	97	0	127	42	22	5	29	1.77
43392632--43392830	29	6.8	29	78	7	172	24	26	13	36	1.92
43392635--43392859	116	1.9	117	90	2	355	24	25	12	36	1.92
43392607--43392851	87	2.8	84	76	12	244	24	25	12	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43392810--43392908	29	3.4	29	87	0	144	25	27	11	36	1.90
43404483--43404532	20	2.5	20	81	12	66	12	24	20	44	1.85
43406606--43406758	50	2.9	50	79	7	128	24	22	32	21	1.98
43406934--43407122	50	3.7	50	81	4	189	24	21	29	24	1.99
43406375--43407366	329	3.0	329	95	0	1743	27	19	26	25	1.99
43417926--43417964	20	2.0	20	94	0	69	5	33	28	33	1.79
43422402--43422497	49	1.9	52	83	10	128	37	19	13	29	1.90
43427817--43427875	21	3.0	19	75	18	57	55	1	0	42	1.09
43428774--43428800	2	13.5	2	100	0	54	0	51	0	48	1.00
43432852--43432907	20	2.8	20	81	10	69	69	1	3	25	1.14
43436875--43436915	21	2.0	21	90	0	64	29	21	29	19	1.98
43438821--43438854	16	2.1	16	88	0	50	50	14	17	17	1.79
43444163--43444224	30	2.1	30	87	0	88	59	8	6	25	1.50
43451715--43451826	56	2.0	56	98	0	215	33	8	16	40	1.80
43452224--43452456	117	2.0	117	98	0	448	22	18	18	40	1.91
43464851--43465194	88	4.0	86	80	5	342	43	10	12	33	1.76
43464851--43465187	86	4.0	85	81	4	351	44	10	12	32	1.76
43465376--43465415	21	2.0	21	85	14	57	67	12	2	17	1.33
43466854--43466901	22	2.2	22	88	7	71	22	6	2	68	1.23
43476686--43476955	142	1.9	136	88	4	396	40	14	15	29	1.87
43484591--43484615	11	2.3	11	100	0	50	24	8	24	44	1.80
43488917--43488950	12	2.6	13	86	13	52	50	23	5	20	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43490252--43490284	12	2.7	12	95	4	57	36	0	6	57	1.23
43501463--43501500	18	2.1	18	85	9	51	47	2	21	28	1.64
43501685--43501725	15	2.7	16	85	7	50	36	2	2	58	1.24
43504966--43505027	25	2.5	25	84	5	72	29	22	24	24	1.99
43506309--43507445	73	15.7	73	96	1	1903	43	18	10	28	1.83
43508945--43509194	50	4.9	50	82	6	284	27	22	29	20	1.98
43508945--43509194	106	2.4	100	84	5	304	27	22	29	20	1.98
43511004--43511128	43	2.9	42	73	21	116	32	26	17	24	1.97
43512687--43512711	12	2.1	12	100	0	50	28	40	24	8	1.83
43522989--43523029	21	2.0	21	85	9	57	29	53	12	4	1.58
43523244--43523281	18	2.2	17	95	4	67	15	0	2	81	0.80
43523244--43523281	6	6.5	6	90	3	60	15	0	2	81	0.80
43525461--43525575	58	2.0	58	91	3	187	32	11	7	48	1.68
43526974--43527035	25	2.5	25	84	5	72	29	22	24	24	1.99
43528317--43528658	23	14.6	23	84	3	432	42	19	11	27	1.85
43528317--43528658	70	4.9	69	85	3	459	42	19	11	27	1.85
43528317--43528658	47	7.3	46	86	3	432	42	19	11	27	1.85
43530150--43530543	50	7.8	50	84	0	482	27	22	29	21	1.99
43532353--43532477	43	2.9	42	73	21	116	32	26	17	24	1.97
43534036--43534060	12	2.1	12	100	0	50	28	40	24	8	1.83
43544338--43544378	21	2.0	21	85	9	57	29	53	12	4	1.58
43544593--43544630	18	2.2	17	95	4	67	15	0	2	81	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43544593--43544630	6	6.5	6	90	3	60	15	0	2	81	0.80
43548279--43548358	25	3.2	26	77	7	85	31	25	18	25	1.98
43549438--43549821	27	14.2	28	83	4	398	41	21	18	19	1.91
43553009--43553034	11	2.4	11	100	0	52	38	7	0	53	1.30
43552990--43553102	41	2.7	42	80	10	133	35	1	0	61	1.12
43553033--43553066	17	2.0	17	88	0	50	35	0	0	64	0.94
43553037--43553110	32	2.3	33	81	6	89	36	0	1	62	1.04
43553059--43553123	32	2.0	32	82	5	78	33	1	4	60	1.27
43557935--43557993	29	2.0	30	86	3	84	55	11	1	30	1.46
43562368--43562416	24	2.0	24	81	14	57	42	0	2	55	1.11
43564385--43564537	75	2.0	75	92	0	252	39	20	13	27	1.89
43565848--43565921	30	2.5	30	84	0	85	14	33	28	22	1.94
43571601--43571626	12	2.2	12	100	0	52	65	7	0	26	1.20
43574039--43574136	50	2.0	50	95	0	178	37	15	14	32	1.87
43577844--43578016	50	3.4	49	80	13	176	23	15	29	32	1.95
43578021--43578111	45	2.0	45	95	0	164	24	17	26	31	1.97
43578342--43578385	23	2.0	22	82	13	54	43	4	20	31	1.72
43580259--43580297	20	1.9	20	84	5	51	28	5	7	58	1.47
43582273--43582450	27	6.6	26	82	6	178	26	16	28	28	1.97
43582274--43582429	82	1.9	81	86	3	224	26	16	28	28	1.97
43582270--43582450	82	2.2	81	82	2	220	27	16	27	28	1.97
43582355--43582461	27	3.9	27	83	1	79	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43591499--43591557	29	2.1	29	87	3	84	54	6	22	16	1.66
43593407--43593817	87	4.7	88	83	4	481	30	17	26	25	1.98
43593386--43593817	131	3.3	131	83	2	553	29	18	25	25	1.98
43593386--43593817	175	2.5	175	85	3	573	29	18	25	25	1.98
43593386--43593817	44	9.9	44	86	1	526	29	18	25	25	1.98
43595114--43595221	54	2.0	54	98	0	207	21	25	24	29	1.99
43595420--43595458	20	1.9	20	84	5	51	28	5	7	58	1.47
43606528--43607308	130	6.0	130	95	0	1355	47	17	6	28	1.72
43606528--43607308	261	3.0	259	95	0	1382	47	17	6	28	1.72
43606528--43607308	391	2.0	390	96	0	1429	47	17	6	28	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153