genome.fa.s18.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  30  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10610212--10610298	33	2.7	32	77	7	95	27	4	17	50	1.65
10610319--10610357	20	2.0	20	94	0	69	48	2	0	48	1.15
10629399--10629427	9	3.3	9	90	9	51	10	0	0	89	0.48
10629399--10629428	8	3.6	8	95	4	51	13	0	0	86	0.57
10629698--10629734	16	2.3	16	100	0	74	37	5	35	21	1.77
10629714--10629801	46	2.0	46	90	4	144	26	5	29	38	1.79
10629714--10629813	46	2.3	44	85	11	129	28	5	31	36	1.78
10629943--10629994	26	2.0	27	84	3	70	50	1	3	44	1.31
10630042--10630105	28	2.4	28	86	5	87	56	0	0	43	0.99
10630039--10630138	44	2.3	41	77	17	103	52	2	1	45	1.19
10631312--10631415	49	2.1	49	87	0	145	50	9	8	30	1.65
10633981--10634021	18	2.2	19	91	8	66	48	19	0	31	1.49
10634166--10634227	25	2.5	25	94	0	106	41	20	9	27	1.84
10634457--10634514	26	2.2	26	96	0	107	43	25	13	17	1.86
10642876--10642915	16	2.4	16	87	4	53	37	2	0	60	1.11
10642859--10642917	20	3.1	19	79	16	68	38	3	0	57	1.15
10649188--10649230	18	2.4	18	88	0	59	41	44	2	11	1.53
10649338--10649431	9	10.4	9	89	0	125	24	8	24	42	1.82
10649338--10649431	27	3.5	27	91	0	152	24	8	24	42	1.82
10649842--10649892	21	2.4	21	76	0	57	41	23	17	17	1.90
10660210--10660315	53	2.0	53	100	0	212	35	5	20	37	1.77
10660267--10660503	117	2.0	117	98	1	458	36	11	16	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10660502--10660540	18	2.2	18	90	0	60	35	12	7	43	1.72
10677017--10677080	31	2.1	31	100	0	128	25	14	15	45	1.83
10682585--10682639	13	4.6	11	76	14	56	65	3	3	27	1.26
10682753--10682796	11	4.3	10	88	8	63	27	0	2	70	0.99
10682739--10682798	20	3.0	20	75	24	63	31	0	1	66	1.01
10683805--10683850	24	1.9	24	100	0	92	36	8	4	50	1.53
10685054--10685094	21	2.0	21	100	0	82	39	4	24	31	1.76
10688191--10688287	10	10.6	9	70	17	51	59	2	3	35	1.24
10688328--10688379	9	5.6	9	73	8	50	67	1	1	28	1.12
10688306--10688343	11	3.5	11	85	3	51	76	0	5	18	0.97
10688773--10689004	9	24.6	9	69	17	118	33	1	3	61	1.23
10688771--10688895	40	3.2	38	75	13	110	30	1	4	63	1.25
10688772--10688946	20	9.1	18	68	22	90	32	1	4	62	1.21
10688882--10688963	29	2.8	29	81	14	96	35	0	2	62	1.09
10688990--10689046	20	2.8	20	86	7	71	22	3	5	68	1.25
10693706--10693790	42	2.0	42	100	0	170	11	16	22	49	1.78
10703400--10703466	25	2.8	24	71	13	57	20	22	17	38	1.93
10703630--10703692	25	2.6	23	75	7	63	17	22	26	33	1.96
10709133--10709183	5	9.6	5	79	12	57	60	1	0	37	1.08
10709133--10709183	17	3.2	15	78	13	57	60	1	0	37	1.08
10710059--10710107	16	3.1	16	75	18	50	38	16	0	44	1.48
10710364--10710506	73	1.9	74	81	6	175	35	22	22	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10710440--10710487	23	2.1	23	84	0	60	29	22	31	16	1.96
10710470--10710538	26	2.7	25	80	4	84	37	24	20	17	1.93
10715713--10715963	50	4.9	50	83	4	281	27	20	28	23	1.99
10721948--10722025	35	2.3	35	82	10	99	60	1	1	37	1.13
10722086--10722189	20	5.3	20	69	23	53	55	4	3	35	1.39
10726006--10726100	32	3.1	31	80	4	111	31	7	14	46	1.72
10726137--10726237	42	2.4	43	83	6	125	28	17	25	27	1.98
10728675--10729483	403	2.0	403	98	0	1555	34	25	17	22	1.95
10733051--10733081	6	5.2	6	100	0	62	51	16	0	32	1.44
10735315--10735342	5	5.6	5	100	0	56	60	0	0	39	0.97
10737619--10737648	3	10.0	3	92	0	51	33	0	3	63	1.11
10748107--10748141	6	5.8	6	86	0	52	14	74	0	11	1.08
10756205--10756236	6	5.3	6	100	0	64	18	46	34	0	1.49
10756196--10756235	18	2.2	18	86	0	53	22	47	27	2	1.64
10756205--10756246	18	2.3	18	87	0	57	21	45	30	2	1.65
10757252--10757303	16	3.2	16	94	0	86	28	0	36	34	1.58
10757284--10757393	45	2.6	43	80	9	129	33	5	29	31	1.80
10757515--10757569	25	2.2	25	84	9	69	52	1	0	45	1.11
10761693--10761773	40	2.0	40	100	0	162	37	17	12	33	1.87
10763456--10763515	28	2.1	28	84	6	77	48	0	6	45	1.29
10764798--10764834	9	4.1	9	92	0	65	45	13	10	29	1.77
10765047--10765106	30	2.0	31	86	3	86	20	40	0	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10766268--10766317	12	4.1	12	78	2	55	16	22	2	60	1.46
10766268--10766316	18	2.7	18	87	3	62	16	22	2	59	1.47
10773421--10773536	61	2.0	60	86	8	166	50	5	3	41	1.42
10773421--10773603	61	2.9	58	77	17	163	49	5	4	40	1.46
10773578--10773621	18	2.6	17	78	7	54	45	0	4	50	1.22
10775306--10775339	4	8.5	4	93	0	59	23	2	0	73	0.97
10779800--10779854	11	5.2	11	75	14	53	45	0	1	52	1.11
10779800--10779854	22	2.6	21	83	11	60	45	0	1	52	1.11
10786827--10786873	18	2.6	18	89	0	67	25	8	27	38	1.85
10793774--10793820	22	2.1	22	100	0	94	34	17	14	34	1.90
10802309--10802374	33	2.0	33	96	0	123	22	16	30	30	1.96
10815360--10815386	11	2.5	11	100	0	54	25	0	0	74	0.83
10820219--10820272	3	19.0	3	74	11	51	64	3	1	29	1.21
10823127--10823167	19	2.0	21	86	9	59	12	26	17	43	1.84
10823766--10823799	18	1.9	17	88	5	50	32	0	14	52	1.42
10824049--10824274	123	1.9	123	85	3	323	41	14	18	26	1.88
10826005--10826037	15	2.2	15	94	0	57	24	0	12	63	1.28
10826311--10826507	98	2.0	98	95	0	358	28	9	23	37	1.87
10827360--10827405	22	2.1	22	83	0	56	28	28	23	19	1.98
10828338--10828697	126	2.9	126	89	2	492	39	14	16	29	1.89
10831613--10831669	25	2.3	24	77	11	62	54	5	0	40	1.23
10831617--10831808	93	2.1	92	92	4	318	57	5	3	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10833760--10833799	18	2.1	20	86	9	57	67	2	5	25	1.23
10835739--10835772	10	3.4	10	91	0	50	5	47	0	47	1.26
10846893--10847254	190	2.0	180	83	7	458	37	0	35	26	1.57
10848987--10849211	40	5.7	40	86	4	249	26	28	20	24	1.99
10849143--10849220	40	1.9	41	82	10	97	26	28	20	24	1.99
10856906--10857128	40	5.6	40	85	3	236	26	27	21	24	1.99
10857060--10857137	40	1.9	41	82	10	97	26	28	21	23	1.99
10861781--10861832	16	3.2	16	86	0	68	42	3	28	25	1.72
10861818--10861909	44	2.0	46	89	4	143	31	4	29	34	1.77
10862166--10862263	49	2.0	49	88	4	144	50	12	7	30	1.67
10876705--10876747	3	14.3	3	100	0	86	65	0	34	0	0.93
10890566--10890605	20	2.0	20	85	0	53	45	5	2	47	1.38
10893566--10893660	46	2.0	47	93	2	165	55	6	15	22	1.62
10895064--10895209	54	2.7	54	81	1	168	35	26	21	17	1.95
10895084--10895230	27	5.4	27	79	2	143	34	24	21	19	1.96
10899526--10899575	26	1.9	26	83	0	64	22	22	30	26	1.99
10917215--10917278	31	2.1	31	93	0	110	28	43	0	28	1.55
10928280--10928335	28	2.0	28	96	0	103	32	35	16	16	1.90
10936171--10936208	17	2.2	17	90	0	58	31	15	7	44	1.75
10936566--10936630	27	2.4	28	82	7	89	30	23	30	15	1.95
10936751--10936807	17	3.4	17	78	9	62	71	0	28	0	0.86
10936935--10937123	19	9.2	19	69	21	114	31	0	14	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10936936--10937141	61	3.3	58	75	16	139	31	0	13	54	1.43
10937016--10937077	21	3.0	21	93	4	101	27	0	16	56	1.40
10937116--10937237	60	2.0	60	87	3	174	31	0	13	54	1.46
10937355--10937391	16	2.4	15	90	4	56	35	2	2	59	1.26
10942467--10942519	24	2.2	24	80	6	63	3	30	1	64	1.22
10942575--10942652	27	2.9	27	82	3	95	21	32	23	23	1.98
10942831--10942908	30	2.7	29	86	4	102	34	19	6	39	1.77
10945667--10945711	3	16.0	3	80	13	51	71	2	0	26	0.98
10945675--10945711	11	3.4	11	96	0	65	75	0	0	24	0.80
10945667--10945711	8	5.3	9	79	12	51	71	2	0	26	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153