genome.fa.s18.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  115  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36141316--36141341	2	13.0	2	100	0	52	50	0	50	0	1.00
36162129--36162233	52	2.0	53	94	1	185	19	24	8	47	1.77
36166582--36167026	220	2.0	219	88	2	651	30	12	19	37	1.88
36174903--36174935	13	2.4	14	90	5	50	33	3	18	45	1.65
36176913--36176975	24	2.9	21	71	15	56	58	11	0	30	1.32
36177162--36177208	3	15.7	3	82	8	60	65	2	2	29	1.15
36178327--36178598	44	6.2	44	88	4	329	25	26	19	28	1.98
36178327--36178598	88	3.1	88	86	5	372	25	26	19	28	1.98
36178327--36178596	132	2.0	132	86	5	377	25	26	18	28	1.98
36178356--36178615	44	5.9	44	90	2	362	25	26	19	28	1.99
36178666--36178767	44	2.3	44	78	6	118	25	23	17	33	1.96
36178700--36178893	88	2.2	88	79	2	192	24	24	22	28	1.99
36185234--36185310	31	2.5	31	80	0	91	36	5	22	36	1.76
36186975--36187028	25	2.2	25	100	0	108	35	18	16	29	1.93
36188150--36188251	46	2.2	45	84	1	123	48	17	6	27	1.73
36191257--36191581	84	3.9	84	94	0	551	16	20	28	35	1.94
36191257--36192333	168	6.0	168	75	16	862	19	18	27	34	1.95
36191540--36191754	104	2.1	104	91	0	342	26	17	25	31	1.97
36191726--36192145	84	5.0	84	99	0	822	15	19	29	35	1.93
36192009--36192392	188	2.0	188	92	0	642	20	18	26	33	1.96
36192250--36192973	114	6.4	114	90	4	990	22	18	26	32	1.97
36192623--36192951	104	3.1	104	83	10	421	24	17	25	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36192727--36192973	113	2.2	114	87	5	295	21	17	27	33	1.96
36192935--36193093	67	2.4	67	98	0	309	26	20	23	28	1.99
36193608--36194528	391	2.4	385	90	4	1453	30	4	22	42	1.74
36198613--36198683	21	3.4	21	82	7	90	32	16	46	4	1.67
36200136--36200171	2	18.0	2	100	0	72	50	0	50	0	1.00
36203078--36203127	17	2.9	17	77	11	57	54	6	4	36	1.44
36203351--36203397	22	2.1	22	92	7	78	25	10	8	55	1.62
36207113--36207164	27	1.9	27	84	7	70	38	15	21	25	1.92
36211519--36211653	68	2.0	68	86	7	193	48	5	3	42	1.43
36213274--36213304	16	1.9	16	93	0	53	70	9	9	9	1.33
36225311--36225353	18	2.3	18	88	4	68	58	4	0	37	1.19
36225310--36225375	19	3.3	19	83	14	71	54	7	0	37	1.29
36225457--36225533	35	2.2	35	95	2	136	45	6	5	42	1.52
36225756--36226007	125	2.0	123	88	3	371	29	15	13	41	1.85
36229950--36230000	24	2.2	24	89	3	77	58	7	3	29	1.44
36231247--36231302	23	2.4	23	100	0	112	32	14	10	42	1.80
36235595--36235633	3	13.0	3	83	0	51	69	0	2	28	1.02
36235730--36235783	23	2.5	22	87	6	74	59	7	1	31	1.36
36235733--36235803	3	23.3	3	74	8	63	61	5	1	30	1.27
36236266--36236301	11	3.2	11	88	4	54	50	0	50	0	1.00
36236392--36236429	16	2.3	17	86	4	51	13	0	7	78	0.94
36237375--36237675	100	3.0	100	100	0	602	32	19	9	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36239436--36239467	9	3.6	9	95	0	55	59	0	9	31	1.29
36239783--36239838	23	2.6	22	81	15	64	53	8	3	33	1.49
36239812--36239897	44	1.9	45	81	11	106	59	3	4	32	1.35
36240125--36240172	21	2.3	21	85	3	62	52	14	4	29	1.60
36240327--36240358	13	2.5	13	95	5	57	59	0	9	31	1.29
36247064--36247117	11	5.0	11	81	4	65	20	44	5	29	1.74
36247654--36247689	18	2.0	18	100	0	72	27	22	16	33	1.95
36251757--36251793	11	3.5	11	85	7	58	18	45	8	27	1.77
36252864--36252916	7	7.7	7	91	2	72	62	0	0	37	0.96
36257488--36257543	18	3.0	19	68	5	60	33	30	3	32	1.75
36257488--36257566	37	2.1	37	97	0	149	32	29	2	35	1.71
36257506--36257566	18	3.3	18	67	13	52	31	27	1	39	1.66
36262536--36262560	12	2.1	12	100	0	50	64	0	24	12	1.27
36264438--36264484	23	2.0	23	87	0	67	53	0	8	38	1.32
36264543--36264596	21	2.5	21	87	3	81	61	0	5	33	1.19
36265745--36265797	26	2.0	26	85	7	72	37	22	15	24	1.92
36270179--36270235	24	2.4	24	91	2	89	1	22	7	68	1.23
36270196--36270243	13	3.8	13	81	8	55	0	18	8	72	1.08
36270496--36270603	49	2.2	48	95	4	191	5	30	1	62	1.29
36270819--36270935	30	3.9	29	77	11	94	44	3	21	30	1.69
36270834--36271018	30	6.4	30	71	10	127	43	3	20	32	1.69
36270864--36271030	83	2.0	83	98	0	325	41	4	17	35	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36271560--36271680	55	2.2	55	89	5	183	35	19	16	28	1.93
36272024--36272281	130	2.0	130	94	0	453	38	21	12	27	1.89
36272253--36272400	75	2.0	74	85	1	197	33	20	13	33	1.91
36272149--36272609	197	2.4	195	93	3	784	36	20	14	29	1.92
36272418--36272626	73	2.9	72	87	3	280	35	19	15	29	1.93
36273323--36273392	33	2.1	33	84	5	88	28	7	14	50	1.69
36285636--36286066	17	25.0	16	67	18	77	45	11	13	29	1.79
36285848--36286063	35	6.1	34	72	17	120	42	12	15	30	1.83
36285923--36286066	55	2.7	53	80	3	171	45	11	13	29	1.79
36285634--36286066	18	25.0	18	70	14	209	44	11	13	30	1.79
36286129--36286171	9	5.0	9	83	11	63	13	0	0	86	0.58
36286130--36286172	10	4.4	10	85	8	54	11	0	0	88	0.52
36286132--36286169	16	2.4	16	95	0	67	13	0	0	86	0.56
36286165--36286201	19	1.9	20	94	5	67	32	10	13	43	1.79
36286200--36286247	15	3.0	16	80	19	64	41	12	14	31	1.83
36286775--36286816	13	3.3	12	86	6	57	2	14	0	83	0.75
36286775--36286816	14	3.2	13	80	19	52	2	14	0	83	0.75
36286939--36286995	24	2.4	24	91	2	89	1	22	7	68	1.23
36286956--36287003	13	3.8	13	81	8	55	0	18	8	72	1.08
36287530--36287646	30	3.9	29	77	11	94	44	3	21	30	1.69
36287545--36287646	30	3.4	30	83	2	125	44	3	21	30	1.70
36288991--36289060	33	2.1	33	84	5	88	28	7	14	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36293375--36293403	7	4.1	7	100	0	58	44	13	13	27	1.82
36293426--36293489	31	2.3	27	80	19	78	35	10	25	28	1.89
36293435--36293497	31	2.0	31	100	0	126	33	9	25	31	1.88
36294978--36295047	16	4.4	16	79	0	68	32	24	2	40	1.70
36295903--36295944	21	2.0	21	85	0	57	28	2	0	69	1.01
36295911--36295962	21	2.3	21	87	9	68	30	1	0	67	1.02
36296329--36296365	18	2.1	18	89	0	56	21	0	5	72	1.04
36299842--36299967	40	3.3	39	65	20	95	36	19	22	22	1.95
36299766--36300036	74	3.7	74	87	0	362	35	18	22	23	1.96
36299766--36300036	148	1.8	148	87	1	400	35	18	22	23	1.96
36302116--36302178	30	2.1	30	88	5	92	58	11	4	25	1.51
36306421--36306482	18	3.3	18	73	8	52	25	4	4	64	1.34
36306630--36306702	13	5.2	14	70	22	55	31	2	1	64	1.16
36311664--36311929	103	2.6	104	91	0	426	19	20	30	29	1.97
36321183--36321770	119	4.9	119	94	0	964	33	17	18	30	1.94
36323455--36323495	16	2.4	17	88	8	57	41	0	2	56	1.13
36327883--36328005	16	7.8	16	70	13	76	29	23	6	40	1.79
36327934--36328004	32	2.2	32	92	0	115	28	25	7	39	1.82
36328209--36328277	31	2.3	31	82	7	79	39	0	1	59	1.06
36330331--36330407	29	2.6	29	75	13	77	61	1	0	37	1.05
36332822--36333650	95	8.7	95	99	0	1631	35	20	9	33	1.86
36336367--36336477	17	6.7	17	66	24	76	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36336555--36336591	17	2.2	16	90	4	56	62	0	0	37	0.96
36336551--36336604	19	3.0	19	78	13	60	57	0	3	38	1.17
36336667--36336722	9	6.4	9	73	8	53	57	0	0	42	0.99
36336664--36336722	26	2.3	27	85	8	86	57	0	0	42	0.98
36336679--36336719	17	2.4	17	87	0	64	60	0	0	39	0.96
36336669--36336718	17	3.1	16	82	8	57	58	0	0	42	0.98
36336545--36336823	127	2.1	130	89	7	422	51	2	4	41	1.35
36337301--36337715	9	42.8	9	66	18	90	33	1	3	60	1.24
36337271--36337353	41	2.0	41	81	4	96	31	1	3	63	1.19
36337371--36337421	21	2.6	20	85	11	70	27	0	3	68	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153