genome.fa.s18.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  108  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33670447--33670675	100	2.2	100	81	9	239	21	28	22	27	1.99
33674009--33674125	50	2.3	49	82	5	128	27	23	27	22	1.99
33674710--33674772	31	2.0	31	96	0	117	41	3	17	38	1.65
33677435--33677491	28	2.1	28	90	6	91	71	1	1	24	1.04
33682086--33682110	12	2.1	12	100	0	50	16	0	32	52	1.44
33690035--33690066	15	2.1	15	100	0	64	75	0	0	25	0.81
33690031--33690072	21	2.0	21	90	0	66	71	0	0	28	0.86
33694491--33694693	89	2.3	85	82	6	228	45	11	12	30	1.78
33701290--33701324	14	2.8	12	87	12	52	28	8	0	62	1.24
33705788--33705859	9	7.9	9	80	9	83	43	0	54	2	1.15
33705790--33705859	3	23.0	3	74	8	52	41	0	55	2	1.14
33710675--33710861	101	1.8	101	88	5	288	24	17	26	31	1.97
33710672--33710857	51	3.7	50	82	4	205	24	17	26	31	1.97
33710868--33710954	45	1.9	45	95	0	156	25	17	24	33	1.96
33719395--33719427	3	11.0	3	93	0	57	66	30	3	0	1.06
33726878--33726907	15	1.9	15	93	6	51	43	0	0	56	0.99
33727135--33727198	33	1.9	33	93	0	110	26	9	12	51	1.70
33740841--33740922	42	2.0	42	85	4	112	34	19	19	26	1.96
33742858--33742910	19	2.9	19	83	10	58	18	7	0	73	1.06
33742858--33742898	19	2.2	20	86	8	59	19	7	0	73	1.07
33746008--33746040	3	11.0	3	100	0	66	66	0	0	33	0.92
33749596--33749630	15	2.3	15	90	0	52	31	2	0	65	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33761808--33761855	20	2.4	20	85	0	60	31	25	12	31	1.92
33773482--33773597	59	2.0	59	94	0	205	21	20	18	38	1.93
33775190--33775269	35	2.3	35	86	0	106	25	17	26	31	1.97
33776186--33776459	78	3.6	77	80	6	281	27	14	13	44	1.82
33786293--33786323	16	1.9	16	93	0	53	6	16	19	58	1.59
33793668--33793761	17	5.5	18	68	22	60	54	1	3	41	1.23
33793629--33793768	68	2.0	72	84	9	191	53	2	2	40	1.30
33799464--33799670	102	2.0	103	92	0	344	41	21	10	27	1.85
33800226--33800302	38	2.1	36	83	11	93	50	2	2	44	1.29
33804019--33804065	26	1.9	26	87	12	73	14	8	8	68	1.39
33808628--33808700	16	4.6	16	75	1	76	41	2	27	28	1.70
33819626--33819658	11	3.1	11	91	4	50	66	3	0	30	1.06
33820922--33821093	50	3.5	50	71	4	150	22	25	22	30	1.99
33820972--33821445	50	9.5	50	65	7	217	23	24	22	29	1.99
33820898--33821456	100	5.6	100	86	2	755	23	24	22	29	1.99
33822859--33822908	14	3.5	14	82	17	59	14	12	0	74	1.09
33822859--33822908	7	7.0	7	75	20	50	14	12	0	74	1.09
33829518--33829543	11	2.4	11	100	0	52	65	0	0	34	0.93
33829786--33829847	25	2.5	25	94	0	106	40	16	27	16	1.89
33860499--33860693	35	5.6	35	83	1	223	40	16	22	20	1.91
33860501--33860693	69	2.8	69	85	0	242	40	17	21	20	1.91
33860499--33860692	104	1.9	103	89	3	300	40	17	22	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33860890--33860929	10	4.1	10	80	6	55	35	15	7	42	1.75
33860929--33860971	22	2.0	21	90	4	68	37	4	4	53	1.43
33860992--33861043	27	1.9	27	100	0	104	23	30	19	26	1.98
33865190--33865232	21	2.0	23	81	9	54	44	11	11	32	1.77
33873847--33873962	42	2.8	42	75	10	112	28	25	25	19	1.99
33875417--33875529	42	2.7	42	76	5	113	24	26	28	20	1.99
33895042--33895120	37	2.1	37	83	0	95	17	10	29	43	1.82
33910973--33911212	120	2.0	120	89	3	367	33	15	24	27	1.95
33913972--33914059	31	2.8	31	78	10	99	23	20	13	42	1.88
33923590--33923681	23	3.9	23	71	15	62	34	22	21	20	1.96
33924687--33924729	21	2.1	20	82	4	50	13	11	13	60	1.59
33925897--33925941	24	1.9	23	86	13	65	24	33	2	40	1.68
33927238--33927578	171	2.0	171	93	0	583	34	17	19	27	1.95
33939111--33939137	4	6.8	4	100	0	54	25	0	25	48	1.52
33940961--33941000	5	8.0	5	94	0	71	40	57	0	2	1.12
33941912--33941996	38	2.2	40	89	4	129	52	5	1	40	1.33
33946009--33946034	12	2.2	12	100	0	52	42	7	7	42	1.62
33952140--33952172	17	1.9	17	93	0	57	60	3	0	36	1.12
33963627--33963679	23	2.4	22	76	20	56	9	18	1	69	1.25
33966007--33966066	22	2.7	23	73	19	63	66	6	0	26	1.16
33966016--33966049	4	8.0	4	90	9	50	73	2	0	23	0.97
33973741--33973772	12	2.8	12	95	4	57	43	18	9	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33981080--33981134	26	2.1	26	96	0	101	36	23	21	18	1.95
33981298--33981520	27	8.3	27	85	5	290	19	19	20	40	1.92
33983678--33983716	16	2.3	18	86	8	55	58	5	2	33	1.33
33989446--33989482	19	1.9	19	88	0	56	37	8	10	43	1.69
33989469--33989505	19	1.9	20	94	5	67	35	5	10	48	1.61
33994484--33994572	25	3.6	25	78	6	108	33	21	17	26	1.96
33999310--33999334	13	1.9	13	100	0	50	20	0	0	80	0.72
33999557--33999605	20	2.3	21	82	6	55	16	10	0	73	1.09
34005695--34005724	12	2.5	12	94	0	51	20	26	26	26	1.99
34007533--34007571	18	2.2	18	95	0	69	41	28	0	30	1.57
34011092--34011167	27	2.8	26	86	7	89	42	22	9	26	1.83
34011092--34011167	18	4.2	18	85	6	100	42	22	9	26	1.83
34012220--34012270	26	2.0	26	96	0	93	19	23	5	50	1.69
34012222--34012264	13	3.3	13	75	12	52	18	27	2	51	1.59
34013966--34014244	56	5.0	55	78	11	244	43	15	10	30	1.81
34013994--34014244	57	4.5	57	81	6	280	43	15	9	31	1.78
34013979--34014244	113	2.4	113	84	3	342	43	15	10	30	1.80
34024881--34024998	43	2.7	44	75	12	118	34	27	16	22	1.95
34026363--34026609	27	9.1	27	85	4	293	42	19	14	24	1.88
34026363--34026609	81	3.0	81	86	2	327	42	19	14	24	1.88
34031761--34031786	5	5.2	5	100	0	52	42	19	19	19	1.90
34032603--34032633	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34041064--34041098	14	2.5	14	100	0	70	20	5	0	74	1.02
34043431--34043470	18	2.2	18	86	8	55	35	10	7	47	1.65
34043645--34043728	44	1.9	44	90	0	132	46	7	8	38	1.62
34043696--34043729	18	1.9	18	88	5	52	55	5	2	35	1.39
34054342--34054427	25	3.5	23	80	10	100	59	1	1	38	1.13
34054325--34054430	48	2.1	52	86	11	159	60	1	0	36	1.14
34056915--34056967	26	2.1	24	82	10	61	22	1	9	66	1.31
34060579--34060621	21	2.0	21	91	8	70	37	4	18	39	1.72
34062027--34062066	20	1.9	22	85	10	57	37	7	7	47	1.60
34062661--34062731	36	2.0	36	94	0	124	46	14	12	26	1.80
34062678--34062731	17	2.9	19	71	20	60	46	16	12	24	1.82
34062660--34062723	17	3.6	17	72	15	58	46	12	12	28	1.78
34071878--34071919	22	1.9	22	90	0	66	42	11	21	23	1.86
34081683--34081750	15	4.4	15	74	18	59	45	0	1	52	1.09
34081774--34081804	16	2.0	16	93	6	55	38	0	0	61	0.96
34081831--34081872	22	1.9	22	85	0	57	47	0	0	52	1.00
34081851--34081885	16	2.2	16	94	0	61	42	0	2	54	1.15
34081928--34081953	9	2.9	9	100	0	52	42	0	0	57	0.98
34090706--34090760	21	2.5	20	77	13	56	63	9	0	27	1.24
34090824--34090964	10	14.6	9	79	15	140	63	3	0	32	1.17
34090808--34090964	50	3.2	47	78	15	174	63	3	0	32	1.17
34091492--34091517	10	2.6	10	100	0	52	26	0	7	65	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34091484--34091643	20	8.2	19	69	18	80	38	0	3	58	1.19
34091484--34091599	30	3.9	29	75	15	87	37	0	3	59	1.14
34091484--34091571	30	3.0	30	80	9	92	36	0	4	59	1.18
34091553--34091652	28	3.5	28	70	20	82	41	1	1	57	1.12
34101848--34101878	10	3.1	10	100	0	62	19	19	19	41	1.90
34107090--34107125	14	2.8	14	84	16	51	63	2	0	33	1.08
34109051--34109146	31	3.1	31	95	3	174	31	9	13	45	1.75
34109702--34109780	8	8.7	9	75	21	67	72	12	15	0	1.13
34109703--34109782	27	3.0	27	94	0	142	72	12	15	0	1.12
34112817--34112912	31	3.1	31	95	3	174	31	9	13	45	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153