genome.fa.s18.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  105  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32841193--32842049	101	8.8	97	72	12	394	38	18	15	27	1.91
32841449--32841729	88	3.2	88	80	1	303	37	16	17	28	1.92
32841624--32842110	100	4.8	98	76	7	377	38	17	16	27	1.91
32841624--32842190	101	5.8	101	77	8	483	39	17	15	27	1.90
32842025--32842300	88	3.2	86	77	10	238	38	18	14	28	1.90
32842346--32842572	82	2.7	82	80	5	249	37	15	17	29	1.91
32842407--32842858	188	2.4	183	79	4	476	39	17	15	27	1.90
32842426--32842919	188	2.6	187	78	5	466	39	17	16	27	1.90
32842765--32843037	88	3.1	86	79	7	282	37	15	17	29	1.91
32843135--32845296	100	22.4	97	72	12	765	38	17	15	28	1.91
32843128--32844113	101	10.1	101	72	10	585	36	18	16	28	1.92
32844318--32844731	88	4.7	87	75	5	314	39	13	16	29	1.88
32844298--32844731	175	2.5	176	78	6	432	39	14	16	29	1.89
32844318--32844734	87	4.8	86	77	5	372	39	13	16	29	1.88
32846521--32847085	101	5.6	100	82	3	659	39	18	15	26	1.90
32846521--32847485	201	4.9	201	81	5	1070	39	19	15	26	1.91
32846979--32847172	87	2.2	88	90	2	302	38	19	17	24	1.92
32847067--32847485	100	4.2	100	84	2	518	38	21	15	24	1.92
32849369--32849680	156	2.0	157	86	4	434	40	11	4	43	1.62
32850197--32850560	101	3.8	101	77	14	334	38	18	15	27	1.91
32850305--32850465	87	1.9	86	83	6	209	39	14	18	27	1.90
32851677--32851741	32	2.0	32	100	0	130	21	21	12	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32853872--32853910	14	2.9	14	81	11	55	0	12	5	82	0.83
32853861--32854141	139	2.0	139	99	0	553	20	14	3	60	1.49
32854011--32854049	14	2.9	14	81	11	55	0	12	5	82	0.83
32853998--32854054	18	3.2	18	76	14	55	0	15	7	77	0.98
32854692--32855902	101	12.1	101	80	5	1213	39	19	15	25	1.91
32854692--32859995	302	18.0	302	75	10	3758	39	18	15	26	1.90
32855968--32858057	101	21.3	101	77	6	1729	39	18	15	26	1.90
32856185--32856209	13	1.9	13	100	0	50	36	48	8	8	1.62
32854692--32859995	202	27.0	201	74	10	3686	39	18	15	26	1.90
32856787--32857059	87	3.1	87	78	6	275	39	18	14	27	1.89
32857183--32857343	88	1.8	88	85	5	227	38	13	17	31	1.88
32857251--32858048	100	8.0	99	80	6	745	40	19	14	25	1.89
32856118--32859417	289	11.3	286	72	15	1412	39	18	14	27	1.90
32857737--32857771	13	2.6	14	86	13	56	40	40	8	11	1.72
32858052--32859995	101	19.8	100	73	11	1171	40	17	14	27	1.89
32854692--32859995	390	13.5	388	74	11	2348	39	18	15	26	1.90
32858834--32858997	87	1.9	88	85	3	233	42	14	14	29	1.84
32858832--32859017	87	2.1	88	81	3	223	41	16	13	27	1.87
32858940--32859318	203	1.9	203	85	4	523	41	16	13	28	1.87
32859234--32859499	88	3.0	89	79	3	288	40	14	15	29	1.86
32859412--32859600	100	1.9	102	84	4	258	43	15	13	28	1.84
32859591--32859621	13	2.4	13	94	0	53	48	32	6	12	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32859873--32860132	137	1.9	137	86	4	373	37	20	18	24	1.94
32860153--32860254	46	2.2	46	82	0	123	45	6	9	38	1.64
32861694--32861871	27	6.6	27	84	3	205	29	28	15	26	1.96
32861715--32861870	82	1.9	81	88	3	233	29	28	15	26	1.96
32869884--32870062	27	6.6	27	83	5	191	29	27	15	27	1.96
32869905--32870060	82	1.9	81	86	3	224	28	28	15	27	1.96
32870611--32870635	13	1.9	13	100	0	50	32	16	20	32	1.94
32871634--32872279	100	6.4	100	79	6	637	41	17	15	25	1.89
32871634--32872440	101	8.1	101	79	7	794	40	17	15	27	1.89
32871634--32875963	201	21.7	201	70	13	1170	40	18	15	26	1.90
32872201--32872367	88	1.9	87	90	3	264	40	13	17	28	1.88
32872390--32872486	46	2.1	46	88	1	142	44	8	11	36	1.70
32872436--32873234	100	7.9	100	80	5	678	42	17	14	25	1.86
32873143--32873410	88	3.1	88	89	0	385	36	19	19	24	1.94
32873217--32877363	201	21.5	191	68	15	1019	38	18	15	26	1.91
32873304--32874503	100	12.1	100	70	11	587	39	18	15	25	1.90
32874415--32874589	86	2.0	87	83	5	221	41	16	16	25	1.88
32874495--32878462	101	39.8	100	70	12	1591	39	18	15	26	1.91
32874685--32874879	88	2.2	88	84	3	259	37	18	16	27	1.92
32874773--32875457	100	6.8	99	81	3	658	38	19	16	26	1.92
32876148--32876408	87	3.0	86	74	3	245	40	14	14	30	1.86
32876605--32876875	88	3.1	88	80	2	278	38	14	16	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32877083--32877249	88	1.9	84	81	4	199	38	15	16	28	1.90
32877241--32877515	150	1.8	150	88	4	421	37	20	16	25	1.93
32877536--32877635	46	2.2	46	87	3	139	47	8	10	35	1.67
32877442--32877733	147	2.0	147	86	1	415	42	15	12	29	1.84
32877589--32878462	100	8.7	100	83	1	998	40	18	15	25	1.90
32877582--32878462	201	4.4	201	82	2	1000	40	18	15	25	1.89
32877582--32878462	301	2.9	300	82	5	1053	40	18	15	25	1.89
32889118--32889196	37	2.1	37	90	0	122	24	18	31	25	1.98
32896551--32896650	42	2.4	42	94	0	173	29	12	30	29	1.92
32897849--32898446	222	2.7	221	91	1	955	33	18	20	28	1.96
32897704--32898315	134	4.6	132	75	9	442	33	18	20	28	1.96
32898071--32898357	134	2.1	134	84	2	371	32	18	20	28	1.96
32897715--32898445	88	8.3	88	73	8	344	32	18	20	28	1.96
32898469--32898571	46	2.3	46	86	3	138	33	20	16	29	1.94
32900704--32900841	54	2.6	54	100	0	276	29	24	19	26	1.98
32916901--32916927	6	4.5	6	100	0	54	18	0	29	51	1.46
32917335--32917376	22	1.9	22	85	0	57	73	2	23	0	0.94
32920775--32920857	10	8.4	10	73	20	52	53	2	0	44	1.13
32921412--32921463	14	3.9	14	80	12	65	5	11	3	78	1.05
32921399--32921466	35	1.9	35	82	11	86	5	14	2	76	1.09
32922634--32922670	17	2.2	17	90	0	56	27	2	18	51	1.60
32923899--32924084	46	4.0	46	95	0	327	34	8	26	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32926721--32926796	38	2.0	38	97	0	143	28	23	17	30	1.97
32927780--32927822	23	1.9	22	90	4	68	13	6	2	76	1.08
32927785--32927861	24	3.3	23	73	26	56	16	5	5	72	1.21
32927804--32927858	28	2.0	28	82	7	67	16	3	5	74	1.15
32927863--32927888	13	2.0	13	100	0	52	38	0	7	53	1.30
32927855--32927999	21	6.8	23	70	21	82	42	0	1	55	1.13
32927888--32927966	38	2.1	35	86	9	86	40	1	0	58	1.06
32928075--32928145	13	5.5	13	67	21	51	42	0	0	57	0.98
32928074--32928120	22	2.1	22	92	0	76	44	0	0	55	0.99
32928062--32928136	38	2.1	37	87	7	109	41	0	1	57	1.07
32928108--32928139	16	2.0	16	100	0	64	37	0	0	62	0.95
32933980--32934133	43	3.6	42	70	14	118	26	18	25	28	1.98
32934908--32935244	44	7.7	44	88	0	496	30	12	18	39	1.87
32934908--32935244	88	3.8	88	92	0	550	30	12	18	39	1.87
32935087--32935230	11	13.2	11	62	17	50	29	10	19	40	1.85
32934911--32935244	22	15.2	22	83	0	409	29	12	18	39	1.87
32939982--32940024	20	2.2	19	84	12	52	62	4	2	30	1.28
32940826--32940921	9	9.9	9	69	20	52	30	4	2	63	1.24
32940806--32940883	30	2.5	32	88	10	110	30	3	2	62	1.26
32940806--32940893	10	8.7	10	67	12	54	30	3	2	63	1.23
32940826--32940905	41	1.9	42	82	7	101	31	5	2	61	1.31
32940867--32940966	26	3.7	27	72	11	87	32	6	2	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32948562--32948656	44	2.2	44	90	0	145	40	21	10	28	1.86
32956290--32956350	25	2.4	27	76	18	67	4	36	3	55	1.38
32956489--32956520	12	2.7	12	95	0	55	56	6	18	18	1.62
32956843--32956868	13	2.0	13	100	0	52	15	7	7	69	1.35
32962355--32963584	252	4.9	251	93	1	1919	18	28	15	37	1.91
32978414--32978623	44	4.8	43	68	17	110	30	18	26	23	1.98
32978452--32979164	44	16.2	44	65	13	133	30	19	24	25	1.98
32978402--32979413	132	7.7	132	96	0	1673	31	19	24	24	1.98
32978402--32979545	396	2.9	392	87	3	1600	31	19	24	25	1.98
32978442--32979545	264	4.2	263	90	2	1511	31	19	23	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153