genome.fa.s18.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  101  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31772356--31772390	16	2.2	16	89	0	52	22	14	20	42	1.88
31775611--31775667	28	2.2	25	80	19	73	77	12	0	10	1.00
31775627--31775668	21	2.0	22	90	4	68	71	14	0	14	1.15
31775611--31775658	16	3.2	15	82	8	62	77	12	0	10	1.00
31775686--31775719	16	2.1	17	88	5	52	79	0	20	0	0.73
31775687--31775719	12	2.8	12	90	4	50	81	0	18	0	0.68
31776974--31777141	88	1.9	88	88	2	257	27	18	27	26	1.98
31777332--31777667	50	6.7	50	68	4	210	29	20	25	24	1.99
31777337--31777667	100	3.3	100	88	0	491	29	20	24	24	1.99
31777894--31777948	26	2.1	26	82	0	65	41	12	20	25	1.87
31778177--31778216	17	2.3	18	91	4	64	45	0	0	55	0.99
31778206--31778260	19	2.9	19	86	5	76	36	0	5	58	1.21
31779705--31779872	88	1.9	88	88	2	257	27	18	27	26	1.98
31779892--31780312	167	2.5	167	87	0	601	25	19	27	27	1.99
31780229--31780607	50	7.6	50	67	1	238	28	20	26	25	1.99
31780235--31780637	100	4.0	100	88	0	556	28	20	24	26	1.99
31781917--31782009	46	2.0	46	100	0	186	30	15	22	32	1.94
31795065--31795107	21	2.1	21	83	12	54	32	2	20	44	1.65
31798749--31798779	16	1.9	16	93	0	53	41	0	22	35	1.54
31809280--31809481	107	1.9	107	97	0	386	25	6	25	42	1.80
31820393--31820450	30	1.9	30	100	0	116	32	6	12	48	1.67
31824444--31824816	201	1.9	201	84	0	503	32	18	25	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31827566--31827711	40	3.7	40	90	3	206	26	28	22	23	1.99
31834018--31834195	27	6.6	27	84	3	205	29	28	15	26	1.96
31834039--31834194	82	1.9	81	88	3	233	29	28	15	26	1.96
31834674--31834702	12	2.4	12	100	0	58	44	0	6	48	1.29
31838259--31838444	40	4.7	40	89	4	261	27	27	20	24	1.99
31843621--31843663	19	2.3	19	95	0	77	20	27	18	32	1.96
31845614--31845656	8	5.4	8	88	0	50	46	23	16	13	1.83
31845898--31846029	29	4.6	29	88	0	194	25	15	30	28	1.96
31849552--31849577	11	2.4	11	100	0	52	26	0	19	53	1.45
31857031--31857076	19	2.5	19	82	6	60	73	8	0	17	1.07
31858605--31858645	16	2.6	16	88	0	55	51	0	0	48	1.00
31860851--31860877	2	13.5	2	100	0	54	51	0	0	48	1.00
31865950--31865995	20	2.3	20	88	7	67	41	0	0	58	0.98
31865952--31865995	19	2.2	20	88	4	63	40	0	0	59	0.98
31865961--31866004	19	2.2	19	88	8	61	47	0	2	50	1.13
31868590--31868650	17	3.4	17	70	12	59	50	14	3	31	1.59
31868581--31868672	37	2.5	36	89	3	139	47	14	5	32	1.66
31874199--31874277	28	2.7	30	80	9	83	62	5	2	30	1.30
31874238--31874289	15	3.4	15	76	10	52	65	7	0	26	1.20
31877005--31877087	33	2.5	33	92	0	139	24	45	4	25	1.72
31880549--31880607	30	2.0	30	86	6	84	1	25	0	72	0.93
31880550--31880622	30	2.5	29	77	16	71	1	27	0	71	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31880608--31880665	26	2.3	26	83	13	77	5	31	1	62	1.27
31880544--31880645	33	2.9	35	77	11	86	1	27	0	69	1.05
31882919--31882973	16	3.5	16	69	14	51	43	3	7	45	1.49
31889942--31889991	26	2.0	25	84	11	66	34	0	8	58	1.28
31897586--31897684	41	2.4	41	91	1	155	16	24	9	50	1.73
31900099--31900210	55	2.0	55	96	0	206	33	14	10	41	1.80
31905579--31905609	15	2.1	15	100	0	62	22	19	12	45	1.84
31908686--31908717	15	2.1	15	100	0	64	43	21	18	15	1.87
31911271--31911342	28	2.8	25	78	12	81	27	1	6	63	1.28
31911361--31911618	26	9.8	26	71	10	157	32	6	3	58	1.39
31911377--31911618	55	4.6	54	72	11	171	32	6	3	58	1.39
31911567--31911620	28	1.9	28	84	0	72	33	7	0	59	1.25
31916684--31916722	19	2.1	19	90	0	60	30	20	5	43	1.73
31921243--31921272	12	2.5	12	100	0	60	33	36	6	23	1.81
31925367--31925539	46	3.8	45	79	7	179	23	20	26	29	1.99
31925364--31925534	93	1.8	93	91	0	279	22	21	27	28	1.99
31927148--31927222	36	2.1	36	97	0	141	32	2	24	41	1.69
31927164--31927222	18	3.2	20	72	18	72	32	3	22	42	1.70
31927148--31927208	16	3.6	16	73	16	59	31	1	24	42	1.64
31928877--31929084	89	2.3	89	98	0	398	29	20	24	25	1.99
31928885--31929253	133	2.8	133	81	5	433	29	19	24	27	1.98
31928877--31929253	89	4.2	89	85	2	391	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31928922--31929348	133	3.2	133	78	7	329	31	19	22	26	1.97
31928841--31929368	44	12.0	44	72	4	348	32	19	21	26	1.97
31930930--31931008	25	3.0	25	77	10	95	24	3	7	64	1.36
31931024--31931087	26	2.5	25	89	2	92	32	6	1	59	1.32
31931233--31931286	28	1.9	28	84	0	72	33	7	0	59	1.25
31931353--31931396	22	2.2	20	84	12	54	27	4	4	63	1.33
31933345--31933423	34	2.5	30	79	15	95	31	25	7	35	1.84
31933355--31933421	34	2.0	34	93	0	116	29	26	7	35	1.84
31937287--31937360	28	2.6	28	84	2	103	29	31	12	27	1.92
31945715--31945862	80	1.9	80	94	0	260	21	27	20	31	1.98
31945715--31945862	40	3.7	40	90	0	233	21	27	20	31	1.98
31953501--31953561	25	2.4	25	78	10	63	37	3	1	57	1.25
31957283--31957328	21	2.3	20	78	14	51	30	6	17	45	1.73
31964305--31964367	18	3.5	18	80	4	56	25	20	23	30	1.99
31976439--31976490	24	2.2	24	86	6	70	34	7	5	51	1.54
31977421--31977616	41	4.8	40	82	10	236	19	21	30	28	1.98
31977422--31977616	82	2.4	82	88	5	281	19	22	29	28	1.98
31978039--31978092	14	3.9	14	72	20	51	22	0	40	37	1.54
31978132--31978187	14	4.0	14	78	0	58	23	0	42	33	1.54
31978124--31978186	28	2.3	28	77	2	74	22	0	41	36	1.54
31980507--31980568	31	2.0	31	96	0	115	12	17	22	46	1.82
31983184--31983367	43	4.3	43	85	1	228	20	20	34	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31984703--31984756	24	2.2	24	93	0	90	35	5	7	51	1.53
31987790--31987834	18	2.6	16	82	10	54	15	37	0	46	1.46
31989420--31989463	23	1.9	23	86	9	63	40	22	15	20	1.90
31993280--31993352	26	2.8	26	81	6	85	32	19	6	41	1.78
31995181--31995618	219	2.0	219	100	0	876	41	13	13	31	1.84
32001135--32001194	30	2.0	31	86	3	86	45	1	35	18	1.60
32001408--32001444	18	2.1	18	94	0	65	29	5	13	51	1.63
32001403--32001448	18	2.8	16	78	15	58	30	6	15	47	1.70
32001495--32001529	18	1.9	18	100	0	70	37	17	11	34	1.85
32002098--32002127	14	2.1	14	100	0	60	26	26	30	16	1.97
32011942--32012120	85	2.1	85	98	0	349	26	26	8	38	1.85
32017354--32017380	14	1.9	14	100	0	54	37	22	25	14	1.93
32024879--32024927	19	2.6	19	87	6	64	75	2	22	0	0.90
32024877--32024928	25	2.1	27	86	13	76	73	1	25	0	0.94
32024877--32024927	13	3.6	14	75	17	52	74	1	23	0	0.92
32025815--32025866	4	13.5	4	76	15	56	71	1	26	0	0.97
32025810--32025866	23	2.4	24	86	13	75	70	1	26	1	1.07
32023847--32026744	938	3.0	950	92	4	4713	35	9	20	33	1.86
32029565--32029611	24	1.9	24	86	4	67	36	0	38	25	1.56
32030280--32030857	27	21.3	27	81	5	612	40	20	18	20	1.92
32030277--32030857	133	4.3	133	81	10	638	40	20	18	20	1.92
32030646--32030764	62	1.9	62	83	6	152	40	20	16	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32030618--32030859	89	2.8	89	83	10	290	40	19	18	21	1.91
32033982--32034043	27	2.3	27	88	0	88	24	25	16	33	1.95
32034254--32034359	45	2.4	45	85	0	149	23	17	11	47	1.80
32037269--32037319	20	2.5	20	87	0	66	41	13	19	25	1.88
32037284--32037333	20	2.5	20	90	0	73	48	8	12	32	1.69
32037302--32037342	20	2.0	20	85	0	55	48	7	9	34	1.64
32037316--32037382	20	3.3	20	79	4	73	43	8	14	32	1.77
32041011--32041060	21	2.4	22	76	10	59	36	0	2	62	1.07
32041019--32041063	20	2.2	20	84	7	56	33	0	2	64	1.06
32040958--32041150	89	2.1	91	78	15	204	34	1	5	59	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153