genome.fa.s18.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  43  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14419100--14419145	19	2.3	21	85	10	62	41	6	2	50	1.40
14419294--14419522	9	25.9	9	74	15	158	45	16	0	36	1.54
14419294--14419522	17	12.9	18	70	16	158	45	16	0	36	1.54
14419294--14419346	24	2.1	25	86	6	72	50	13	0	35	1.41
14419301--14419455	63	2.5	60	87	5	213	47	16	1	34	1.55
14421950--14422047	49	2.0	49	100	0	196	30	12	12	44	1.78
14432130--14432159	15	2.0	15	93	0	51	63	0	13	23	1.29
14433430--14433501	24	3.0	24	74	13	76	61	1	0	37	1.05
14433449--14433486	20	1.9	19	89	5	58	65	0	0	34	0.93
14443209--14443265	15	3.9	15	73	11	55	43	7	19	29	1.77
14443201--14443285	30	2.8	30	90	0	125	45	7	21	25	1.76
14447665--14447741	15	5.1	15	71	12	59	44	7	19	28	1.78
14447657--14447741	30	2.8	30	92	0	134	44	7	21	27	1.77
14447896--14448004	2	54.5	2	100	0	218	0	49	0	50	1.00
14465586--14465614	15	2.0	15	93	6	51	41	0	0	58	0.98
14474609--14474642	16	2.1	17	89	10	54	11	11	20	55	1.67
14482855--14482892	19	2.0	19	100	0	76	52	26	15	5	1.64
14483304--14483566	131	2.0	131	98	0	508	34	12	8	44	1.73
14491182--14491231	24	2.2	22	82	10	57	62	10	14	14	1.55
14491190--14491243	24	2.2	24	83	9	65	64	9	12	12	1.49
14492904--14493023	58	2.1	58	100	0	240	42	13	15	28	1.85
14494310--14494345	18	2.0	18	88	0	54	61	11	2	25	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14497932--14498040	57	1.9	56	88	3	166	40	8	10	41	1.69
14503921--14503998	39	2.0	39	97	0	147	42	20	6	30	1.77
14507938--14507985	22	2.2	22	96	0	87	27	31	0	41	1.56
14508044--14508109	30	2.2	29	84	5	87	36	0	0	63	0.95
14509189--14509213	7	3.6	7	100	0	50	28	0	12	60	1.32
14509847--14509881	18	1.9	18	88	0	52	25	34	8	31	1.86
14510381--14510577	29	6.4	29	83	9	232	43	27	2	26	1.66
14510575--14510794	56	3.9	55	92	3	368	35	10	6	47	1.65
14510786--14510810	10	2.5	10	100	0	50	44	8	0	48	1.32
14513393--14513745	126	2.8	126	91	1	593	32	22	15	29	1.95
14513403--14513785	126	3.0	121	78	10	385	33	21	14	29	1.94
14515347--14515380	17	2.0	17	88	0	50	44	2	0	52	1.16
14516772--14516980	104	2.0	104	100	0	418	33	11	8	46	1.71
14517005--14517283	132	2.1	132	100	0	558	48	11	5	34	1.62
14524820--14525076	86	3.0	86	82	4	320	24	21	22	30	1.99
14526732--14526828	41	2.3	42	73	1	97	11	9	5	74	1.21
14529377--14529425	19	2.5	20	80	6	57	40	12	20	26	1.87
14532547--14532580	14	2.3	15	95	5	61	73	8	11	5	1.24
14532537--14532588	14	3.6	14	82	5	50	73	9	13	3	1.23
14535529--14535571	17	2.6	16	77	7	50	41	9	2	46	1.48
14539923--14540087	43	3.8	43	78	2	170	38	21	15	24	1.92
14539923--14540085	86	1.9	85	81	7	195	38	20	15	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14544977--14545008	17	1.9	17	93	6	57	53	0	3	43	1.16
14546989--14547017	15	2.0	15	93	6	51	51	0	0	48	1.00
14552030--14552060	2	15.5	2	100	0	62	51	0	0	48	1.00
14555055--14555096	11	3.8	11	80	0	57	59	7	11	21	1.56
14555056--14555102	22	2.2	22	80	3	60	63	4	12	19	1.44
14555648--14555703	29	1.9	29	89	7	87	50	0	0	50	1.00
14555616--14555707	47	2.0	47	82	0	112	46	3	0	50	1.17
14557218--14557268	23	2.2	23	86	10	77	50	5	0	43	1.26
14559650--14559728	27	2.9	27	70	15	65	53	7	7	31	1.57
14565603--14565661	18	3.3	18	82	0	64	33	15	33	16	1.91
14571646--14571719	35	2.1	35	100	0	148	25	21	10	41	1.85
14572190--14572267	27	2.9	27	80	3	95	21	25	29	23	1.99
14572743--14572860	8	15.4	8	66	24	67	50	14	0	33	1.49
14572769--14573104	19	18.2	19	67	21	146	54	11	1	32	1.44
14572769--14572971	27	8.1	27	82	15	242	54	11	0	33	1.40
14572844--14573100	49	6.1	41	70	20	156	54	12	1	31	1.46
14572774--14572950	49	3.5	48	89	5	246	54	11	0	33	1.40
14573014--14573102	39	2.2	41	88	6	128	56	11	3	29	1.51
14572844--14573101	61	4.1	60	72	19	188	55	12	1	31	1.46
14572850--14572980	21	6.0	21	70	24	74	55	11	0	32	1.41
14572945--14573131	61	3.1	60	72	11	166	54	12	1	31	1.47
14573835--14573905	37	2.0	36	83	10	92	50	1	9	38	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14574495--14574532	19	2.0	19	100	0	76	31	15	26	26	1.96
14587592--14587653	17	3.5	17	79	16	81	46	11	6	35	1.65
14587580--14587653	36	2.1	36	100	0	148	47	13	5	33	1.66
14587580--14587637	19	3.2	19	76	18	77	46	15	5	32	1.68
14588811--14588877	33	2.0	33	100	0	134	22	32	11	32	1.90
14589852--14589889	18	2.1	18	90	0	58	23	15	18	42	1.89
14593180--14593457	46	6.0	46	93	2	450	28	26	9	35	1.87
14597438--14597462	13	1.9	13	100	0	50	48	24	0	28	1.52
14600781--14600825	22	2.0	24	91	8	76	22	22	2	53	1.57
14601310--14601348	20	2.0	20	95	5	71	41	5	2	51	1.38
14602093--14602144	15	3.2	15	73	19	50	44	0	1	53	1.11
14602078--14602144	34	2.1	34	83	8	86	46	1	1	50	1.19
14602284--14602339	17	3.4	16	90	5	85	62	0	1	35	1.06
14602284--14602339	8	6.8	8	75	20	53	62	0	1	35	1.06
14602861--14602910	20	2.3	20	86	10	64	58	10	0	32	1.31
14605212--14605252	8	5.1	8	87	0	64	29	2	21	46	1.64
14608662--14608706	23	2.0	23	91	4	74	37	2	0	60	1.09
14608663--14608714	22	2.2	22	83	10	59	40	3	0	55	1.18
14612305--14612347	18	2.4	18	84	7	52	58	0	2	39	1.11
14612304--14612388	38	2.2	38	80	4	89	55	1	2	41	1.20
14613244--14613285	16	2.6	16	88	7	59	38	7	30	23	1.82
14613605--14613645	13	3.2	12	80	12	55	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14617243--14617285	18	2.4	18	84	7	52	58	0	2	39	1.11
14617242--14617326	38	2.2	38	80	4	89	55	1	2	41	1.20
14618182--14618223	16	2.6	16	88	7	59	38	7	30	23	1.82
14618478--14618503	12	2.2	12	100	0	52	53	0	0	46	1.00
14618644--14618670	12	2.2	12	100	0	54	51	0	0	48	1.00
14618918--14618979	32	1.9	32	96	0	115	29	9	22	38	1.86
14619565--14619596	15	2.1	15	100	0	64	75	0	0	25	0.81
14619669--14619716	23	2.1	23	92	0	78	58	14	4	22	1.54
14619821--14619867	24	2.0	24	87	4	69	44	0	2	53	1.12
14619821--14619868	23	2.1	23	84	7	62	45	0	2	52	1.12
14619607--14620052	222	2.0	222	97	0	847	51	7	4	36	1.52
14621160--14621196	17	2.1	18	90	10	58	51	5	0	43	1.24
14623069--14623131	33	1.9	33	96	0	117	22	25	6	46	1.75
14623643--14623701	25	2.4	25	97	0	109	57	20	6	15	1.60
14624580--14624605	5	5.2	5	100	0	52	80	0	19	0	0.71
14624581--14624632	15	3.5	14	82	12	59	71	3	25	0	1.03
14624596--14624633	16	2.4	16	91	4	60	65	5	28	0	1.14
14624668--14624708	17	2.3	17	87	8	55	63	4	24	7	1.40
14636907--14636935	14	2.1	14	100	0	58	44	13	13	27	1.82
14637791--14637818	9	3.1	9	100	0	56	57	10	0	32	1.33
14638065--14638092	9	3.1	9	100	0	56	57	10	0	32	1.33
14637602--14638149	274	2.0	274	100	0	1096	36	12	10	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14638074--14638267	59	3.3	59	98	0	370	45	8	5	40	1.58
14638283--14638324	16	2.6	16	92	0	66	42	7	2	47	1.43
14638298--14638353	23	2.5	23	82	2	69	44	1	1	51	1.22
14639196--14639283	21	4.2	21	77	2	70	20	18	18	43	1.89
14640530--14640570	21	1.9	22	85	14	59	39	4	12	43	1.63
14642085--14642131	22	2.1	22	84	0	58	57	8	14	19	1.63
14642465--14642515	25	2.0	25	100	0	102	41	7	15	35	1.76
14646171--14646299	58	2.2	60	80	5	138	24	14	18	41	1.88
14652144--14652192	5	10.0	5	93	2	82	42	0	0	57	0.99
14656356--14656442	25	3.5	25	81	10	99	26	25	18	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153