genome.fa.s18.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  20  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6795427--6795475	17	3.1	15	80	11	53	57	0	6	36	1.24
6801527--6801567	14	3.2	13	80	12	50	2	17	0	80	0.82
6802206--6802282	30	2.6	30	78	13	88	27	5	1	66	1.21
6802247--6802310	17	3.6	17	72	6	56	31	1	1	65	1.11
6804842--6804890	15	3.3	15	72	11	55	28	20	22	28	1.98
6804839--6804911	30	2.4	30	88	0	101	30	21	20	27	1.98
6804935--6805048	32	3.5	31	72	5	93	23	18	28	28	1.98
6804961--6805062	16	6.2	17	75	7	86	20	18	31	29	1.97
6804935--6805062	65	2.0	65	83	6	161	21	17	30	29	1.97
6806151--6806206	29	1.9	29	96	0	103	57	7	0	35	1.26
6806365--6806445	40	2.0	40	92	0	135	35	14	11	38	1.82
6815740--6815780	17	2.3	19	79	8	50	46	4	7	41	1.53
6829328--6829365	20	1.9	20	88	0	58	23	10	28	36	1.88
6830997--6831029	10	3.3	10	91	0	57	87	3	9	0	0.63
6835757--6835895	5	27.6	5	99	0	269	59	0	0	39	1.02
6836419--6836452	17	2.0	17	94	0	59	44	50	0	5	1.26
6841058--6841091	17	2.0	17	94	0	59	44	50	0	5	1.26
6845060--6845084	3	8.3	3	100	0	50	0	32	36	32	1.58
6847157--6847190	18	1.9	18	94	5	61	35	0	0	64	0.94
6855751--6855775	2	12.5	2	100	0	50	52	0	48	0	1.00
6862595--6862633	8	4.8	8	87	3	51	71	2	0	25	0.98
6874055--6874081	5	5.4	5	100	0	54	44	55	0	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6884771--6884832	32	2.0	32	87	3	90	30	16	14	38	1.88
6890901--6890947	16	2.9	16	84	9	60	19	4	2	74	1.09
6892037--6892093	25	2.2	25	75	9	62	73	1	5	19	1.11
6892153--6892189	8	4.4	8	90	10	56	70	0	2	27	1.01
6892153--6892189	17	2.2	17	90	9	58	70	0	2	27	1.01
6893065--6893095	15	2.1	15	93	0	53	22	0	29	48	1.51
6893681--6893718	18	2.1	18	85	9	51	39	2	0	57	1.12
6894756--6894964	43	4.9	43	86	1	262	29	33	17	19	1.95
6897868--6897912	13	3.4	13	84	6	54	24	26	17	31	1.97
6899022--6899069	15	3.3	15	76	5	53	39	35	0	25	1.56
6899051--6899090	21	1.9	21	89	0	62	45	35	0	20	1.51
6899057--6899101	14	3.2	15	81	9	51	53	26	0	20	1.46
6899078--6899131	14	3.8	14	82	4	63	50	27	0	22	1.50
6900079--6900323	41	5.7	41	79	13	251	32	27	21	18	1.97
6900113--6900290	93	1.9	92	90	3	286	32	28	21	17	1.96
6900387--6900494	40	2.7	40	76	7	112	21	17	18	42	1.89
6901937--6902014	22	3.5	22	94	3	129	58	0	0	41	0.98
6906317--6906345	3	9.7	3	100	0	58	65	0	0	34	0.93
6913772--6913806	17	2.1	17	88	0	52	45	2	14	37	1.59
6916875--6916925	25	2.0	25	85	7	68	45	3	0	50	1.20
6916949--6916992	22	2.0	22	90	0	70	50	0	0	50	1.00
6916949--6917004	22	2.6	22	86	5	62	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6927143--6927343	31	6.5	31	75	3	174	33	9	15	41	1.79
6927106--6927343	92	2.6	91	78	5	246	34	8	16	40	1.79
6927474--6927968	84	5.9	85	90	4	692	27	15	26	30	1.96
6927475--6927968	127	3.9	126	91	3	725	27	15	26	30	1.96
6927474--6927970	211	2.4	211	93	1	834	27	15	26	30	1.96
6929430--6929508	30	2.6	30	78	7	97	30	30	12	26	1.93
6946870--6946978	42	2.6	42	89	0	173	23	26	31	18	1.97
6948323--6948356	16	2.1	16	100	0	68	58	0	23	17	1.38
6948981--6949043	29	2.1	30	82	8	74	23	11	6	58	1.55
6948990--6949051	30	2.1	29	81	3	70	22	11	6	59	1.54
6949417--6949485	30	2.2	30	84	5	84	42	15	5	36	1.72
6949419--6949485	32	2.2	30	83	5	80	43	16	5	34	1.72
6951887--6951946	31	1.9	31	96	0	111	55	6	5	33	1.48
6963370--6963429	30	2.0	31	90	3	95	20	41	0	38	1.52
6964315--6964353	12	3.2	12	82	13	53	71	0	2	25	0.98
6965957--6966026	35	2.0	35	100	0	140	40	11	17	31	1.85
6966798--6966853	28	2.0	28	100	0	112	10	32	10	46	1.73
6972207--6972234	9	3.1	9	100	0	56	67	0	21	10	1.20
6991453--6991507	27	2.0	27	100	0	110	41	10	18	29	1.84
7008555--7008591	14	2.4	17	86	13	53	48	0	0	51	1.00
7008741--7008791	14	3.6	14	74	7	50	68	0	13	17	1.21
7008780--7008813	16	2.1	16	88	5	50	76	5	14	2	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7009703--7009774	24	2.9	24	78	15	67	44	0	22	33	1.53
7009918--7010013	39	2.5	39	80	6	108	20	23	28	27	1.99
7011515--7011571	29	2.0	29	96	0	105	38	10	22	28	1.87
7015536--7015572	14	2.4	17	86	13	53	48	0	0	51	1.00
7015722--7015772	14	3.6	14	74	7	50	68	0	13	17	1.21
7015761--7015794	16	2.1	16	88	5	50	76	5	14	2	1.09
7016889--7016984	39	2.5	39	80	6	108	20	23	28	27	1.99
7023256--7023711	228	2.0	228	99	0	903	37	8	15	38	1.78
7025888--7025941	5	10.8	5	92	7	92	38	1	0	59	1.08
7026680--7026734	24	2.2	26	78	18	64	34	0	21	43	1.53
7026891--7027026	40	3.5	39	76	7	141	25	17	25	31	1.97
7030425--7030475	23	2.2	23	80	16	61	68	5	0	25	1.12
7037456--7037480	8	3.1	8	100	0	50	64	0	0	36	0.94
7041408--7041432	3	8.3	3	100	0	50	68	0	32	0	0.90
7046314--7046379	33	2.0	33	90	0	105	53	10	15	21	1.72
7048377--7048408	16	2.0	16	93	0	55	46	18	3	31	1.65
7064790--7064845	16	3.3	17	81	16	71	66	3	0	30	1.09
7066111--7066256	37	4.0	37	93	1	242	24	21	16	36	1.94
7066220--7066488	46	5.6	46	84	10	340	28	22	14	34	1.93
7066263--7066482	52	4.3	52	85	8	299	27	22	14	35	1.93
7066220--7066488	98	2.7	98	93	0	457	28	22	14	34	1.93
7081423--7081452	6	5.0	6	95	0	51	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7082141--7082181	15	2.6	16	81	18	50	68	2	26	2	1.15
7097416--7097510	44	2.2	43	94	3	165	31	7	5	55	1.50
7098300--7098414	39	3.0	39	89	3	180	51	26	2	19	1.60
7098547--7098609	17	3.5	17	69	12	54	34	3	12	49	1.57
7098544--7098615	37	1.9	37	94	0	126	34	2	15	47	1.60
7098615--7098647	9	3.7	9	91	0	57	24	9	21	45	1.80
7107010--7107040	13	2.5	12	94	5	53	0	0	12	87	0.55
7109752--7109793	20	2.2	20	87	8	61	59	0	7	33	1.25
7111020--7111054	11	3.0	11	91	8	52	0	14	0	85	0.59
7111768--7111804	14	2.6	15	79	12	51	16	0	21	62	1.33
7118737--7118783	21	2.2	22	92	3	78	21	38	19	21	1.94
7132096--7132140	24	1.9	24	90	4	74	17	6	6	68	1.33
7133704--7133745	16	2.6	16	82	14	50	69	2	0	28	1.01
7136290--7136509	78	2.8	78	94	2	372	33	21	16	28	1.95
7136321--7136509	37	4.8	40	76	13	205	34	21	16	28	1.95
7136290--7136484	37	5.1	37	76	13	180	33	20	16	28	1.95
7136675--7136720	24	2.0	23	83	12	58	50	17	0	32	1.47
7137446--7137504	31	1.9	30	89	3	91	23	3	3	69	1.19
7141856--7141896	21	2.0	21	85	9	57	41	0	2	56	1.13
7142141--7142183	20	2.0	22	86	8	63	58	0	0	41	0.98
7146158--7146193	18	1.9	19	94	5	65	63	0	2	33	1.08
7160526--7160578	19	2.8	17	76	18	52	22	20	3	52	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7174411--7174546	60	2.3	60	82	6	161	27	11	12	48	1.75
7198486--7198510	3	8.3	3	100	0	50	32	0	0	68	0.90
7202756--7202782	2	13.5	2	100	0	54	51	0	0	48	1.00
7207355--7207547	96	2.0	96	97	0	368	34	19	20	24	1.96
7207828--7207924	46	2.0	50	86	9	139	64	11	5	18	1.43
7210144--7210190	15	3.2	14	77	16	51	29	2	2	65	1.15
7212561--7212596	18	2.0	18	100	0	72	22	16	0	61	1.35
7213737--7213773	15	2.5	15	90	0	65	67	0	0	32	0.91
7214509--7214695	46	4.0	46	87	4	277	43	13	11	30	1.80
7214601--7214676	24	3.2	24	62	20	61	42	13	11	32	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153