genome.fa.s18.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  41  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13886962--13886994	15	2.3	15	89	5	50	54	6	6	33	1.50
13891539--13892032	91	5.4	91	88	3	656	23	20	14	41	1.89
13891541--13892072	46	11.7	45	86	3	647	23	20	14	41	1.89
13891541--13892072	137	3.9	135	85	3	672	23	20	14	41	1.89
13891920--13891990	23	3.1	23	61	15	56	23	19	9	46	1.80
13897031--13897165	68	2.0	69	86	1	191	50	3	4	41	1.40
13900807--13900873	28	2.3	30	80	12	68	14	23	19	41	1.89
13905518--13905582	28	2.4	28	94	2	114	41	10	0	47	1.38
13916527--13916594	22	3.3	21	84	8	86	39	19	11	29	1.87
13921493--13921582	40	2.2	40	82	2	117	22	33	16	27	1.95
13931818--13931860	17	2.4	18	88	7	61	62	0	0	37	0.95
13934693--13934730	19	2.1	18	90	5	58	57	7	0	34	1.28
13935182--13935216	18	1.9	18	100	0	70	0	11	8	80	0.92
13936655--13937110	228	2.0	228	98	0	876	35	18	14	31	1.91
13937177--13937472	149	2.0	148	97	0	565	31	18	11	38	1.87
13941102--13941406	146	2.1	142	80	6	326	43	10	8	37	1.70
13941394--13941427	14	2.3	15	90	5	52	47	0	2	50	1.16
13941102--13941426	147	2.2	142	78	7	341	44	9	8	38	1.67
13941654--13941697	19	2.3	19	84	7	54	43	0	0	56	0.99
13942883--13942913	5	6.2	5	92	0	53	77	0	3	19	0.90
13944313--13944382	31	2.3	31	80	5	79	40	11	12	35	1.80
13957543--13957577	17	2.1	17	88	0	52	17	0	2	80	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13957706--13958124	109	3.8	109	82	4	450	30	16	18	34	1.93
13970058--13970107	25	2.0	25	84	0	64	36	20	18	26	1.95
13969932--13970569	125	5.1	125	96	0	1161	34	20	19	25	1.96
13970433--13970482	25	2.0	25	84	0	64	36	20	18	26	1.95
13973061--13973479	109	3.8	109	82	4	468	30	17	18	34	1.94
13974282--13974419	56	2.5	56	82	5	190	28	19	26	25	1.99
13974967--13975013	21	2.2	21	96	0	85	38	4	4	53	1.40
13974879--13975125	110	2.2	110	94	0	431	31	5	11	51	1.60
13975078--13975119	21	2.0	21	100	0	84	33	4	4	57	1.41
13975081--13975130	21	2.5	20	90	6	75	30	6	4	60	1.39
13975178--13975211	18	1.9	17	88	5	50	26	0	11	61	1.30
13975899--13975963	30	2.3	27	84	7	76	52	0	3	44	1.16
13977436--13977527	21	4.4	21	78	8	98	17	21	25	35	1.95
13977436--13977527	44	2.2	41	82	7	105	17	21	25	35	1.95
13978495--13978549	8	6.8	8	76	12	58	36	0	1	61	1.06
13978750--13978790	13	3.2	13	86	3	57	70	0	29	0	0.87
13980052--13980086	12	2.9	12	91	0	52	17	25	17	40	1.90
13980017--13980136	57	2.1	58	88	1	179	19	23	20	37	1.94
13985497--13985566	19	3.6	21	79	9	69	38	2	2	55	1.29
13985497--13985575	20	4.1	20	78	4	63	40	2	2	54	1.27
13985731--13986087	41	8.7	41	87	3	493	16	20	30	32	1.95
13986432--13986491	22	2.7	24	75	12	56	26	1	28	43	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13986463--13986547	35	2.4	36	84	2	109	23	2	28	45	1.65
13986730--13986771	16	2.5	17	92	7	68	54	0	0	45	0.99
13990400--13990442	22	2.0	22	95	0	77	41	27	20	9	1.83
13990611--13990643	9	3.8	9	88	8	50	30	3	0	66	1.06
13990659--13990837	86	2.1	86	94	2	315	40	7	0	51	1.31
13990617--13990858	133	1.8	133	88	0	376	39	7	0	52	1.36
13990789--13990887	16	6.2	16	63	19	55	38	3	5	53	1.38
13990795--13990823	13	2.1	14	93	6	51	31	3	0	65	1.09
13990617--13990858	47	5.3	46	80	10	293	39	7	0	52	1.36
13994492--13994540	24	2.0	24	96	0	89	24	12	26	36	1.91
13998326--13998360	17	2.1	17	89	5	54	48	5	14	31	1.67
13999012--13999214	41	5.0	41	84	8	236	20	18	27	33	1.96
14000113--14000146	17	2.0	17	100	0	68	17	11	35	35	1.87
14009102--14009137	15	2.5	14	86	8	54	44	8	0	47	1.33
14013051--14013077	14	1.9	14	100	0	54	51	7	18	22	1.70
14017896--14017922	14	1.9	14	100	0	54	51	7	18	22	1.70
14019834--14019868	3	11.7	3	93	0	61	31	0	65	2	1.07
14022811--14022843	17	1.9	17	93	0	57	24	3	6	66	1.28
14024263--14024368	53	2.0	53	100	0	212	32	22	11	33	1.90
14024843--14024937	43	2.2	43	88	0	136	14	24	34	26	1.94
14026336--14026455	43	2.8	42	83	1	132	26	14	29	30	1.95
14030300--14030346	21	2.2	22	92	3	78	21	19	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14033657--14033699	21	2.0	22	86	13	63	44	0	13	41	1.44
14033657--14033700	20	2.1	21	84	12	56	45	0	13	40	1.44
14033737--14033951	64	3.4	66	81	9	216	33	7	17	41	1.78
14033771--14033947	64	2.8	64	85	6	238	32	7	18	41	1.79
14036906--14036962	25	2.3	25	93	0	96	35	22	26	15	1.94
14039492--14039525	15	2.3	15	94	0	59	35	0	8	55	1.31
14042279--14042440	44	3.5	44	82	11	216	30	15	24	29	1.95
14042284--14042444	51	3.3	51	83	11	246	32	14	23	29	1.95
14052710--14052752	3	14.3	3	90	0	68	60	0	4	34	1.17
14058411--14058478	34	2.0	34	100	0	136	44	8	14	32	1.76
14068466--14068558	30	3.0	32	76	10	86	40	4	8	46	1.54
14069649--14069811	54	3.0	54	100	0	326	40	19	22	18	1.91
14072376--14072418	12	3.6	12	77	22	54	27	4	0	67	1.10
14072353--14072435	33	2.5	33	80	20	102	32	3	0	63	1.11
14072361--14072434	24	3.0	24	77	20	80	31	2	0	66	1.06
14078829--14078967	48	2.9	48	89	0	206	20	15	41	22	1.90
14088813--14088860	24	2.0	24	91	0	78	33	4	10	52	1.55
14090780--14090827	24	2.0	24	91	0	78	33	4	10	52	1.55
14093652--14093695	22	2.0	21	91	4	70	40	4	13	40	1.65
14094948--14094988	12	3.4	12	93	0	64	4	34	4	56	1.42
14099173--14099240	11	6.4	11	75	17	63	36	2	0	60	1.12
14099154--14099249	41	2.3	40	89	7	156	34	2	0	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14099184--14099255	32	2.3	31	81	9	76	37	2	0	59	1.12
14099223--14099262	21	1.9	21	89	0	62	37	2	0	60	1.11
14099222--14099280	22	2.8	21	80	14	59	40	1	3	54	1.27
14099800--14099845	13	3.1	15	72	15	51	63	0	0	36	0.95
14106875--14106920	18	2.6	17	78	21	51	45	0	4	50	1.21
14108467--14108550	42	2.0	42	83	0	105	23	7	25	44	1.79
14110281--14110369	25	3.6	25	75	3	72	28	22	28	21	1.99
14110405--14110468	25	2.6	25	82	7	76	28	18	29	23	1.98
14112812--14112844	15	2.1	16	88	5	50	66	3	0	30	1.06
14129217--14129272	15	3.6	15	73	17	60	41	0	1	57	1.09
14129580--14129710	41	3.2	42	84	3	176	41	15	25	17	1.89
14129565--14129704	41	3.4	41	85	2	172	41	15	25	17	1.88
14130352--14130386	18	1.9	18	88	0	52	54	2	2	40	1.30
14132075--14132109	18	1.9	18	94	0	61	31	20	22	25	1.98
14133655--14133793	26	5.4	26	68	22	89	43	0	3	51	1.24
14133640--14133887	102	2.5	100	88	4	363	42	0	3	53	1.22
14133815--14133854	17	2.3	17	91	4	62	37	0	2	60	1.11
14133815--14133867	18	2.9	19	88	5	74	41	0	1	56	1.10
14134102--14134153	16	3.2	16	78	10	52	28	23	5	42	1.77
14137254--14137287	17	1.9	18	88	5	52	50	0	0	50	1.00
14137499--14137547	21	2.4	20	83	6	62	26	2	28	42	1.66
14137568--14137627	28	2.1	28	87	6	86	18	8	33	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14137615--14137660	21	2.2	21	84	7	58	15	4	36	43	1.66
14139207--14139318	31	3.4	32	78	9	109	59	0	2	37	1.11
14139182--14139325	76	1.9	76	82	7	184	61	0	2	36	1.08
14140505--14140548	17	2.6	16	82	7	52	31	2	11	54	1.48
14140929--14141002	31	2.4	29	78	12	76	36	8	10	44	1.69
14141441--14141493	26	2.0	26	88	0	79	28	0	11	60	1.31
14146831--14146894	13	4.9	13	75	7	67	31	7	25	35	1.84
14150443--14151120	339	2.0	339	100	0	1356	37	5	20	35	1.76
14152773--14152959	41	4.6	41	95	2	315	30	24	19	25	1.98
14156163--14156220	30	1.9	30	89	0	89	34	12	25	27	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153