genome.fa.s18.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  130  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41008431--41008570	69	2.0	70	87	2	201	30	7	34	28	1.84
41016720--41016838	43	2.8	41	83	11	141	31	25	17	25	1.97
41016739--41016873	43	3.1	43	85	5	157	30	23	17	28	1.97
41024724--41024869	43	3.4	44	82	12	178	32	25	15	26	1.96
41024705--41024874	86	2.0	86	83	11	215	31	25	16	25	1.96
41035434--41035560	35	3.6	35	81	1	146	42	33	11	12	1.79
41039461--41039491	2	15.5	2	100	0	62	51	0	48	0	1.00
41045929--41045958	15	1.9	16	93	6	53	0	16	0	83	0.65
41046176--41046227	19	2.7	19	75	0	59	63	0	7	28	1.22
41046219--41046314	19	5.2	18	67	13	61	66	4	4	25	1.27
41046219--41046316	17	5.2	19	67	26	57	66	4	4	25	1.27
41047779--41047808	15	2.0	15	93	0	51	40	23	23	13	1.90
41047822--41047948	42	3.0	42	88	1	182	34	20	18	25	1.96
41048312--41048382	21	3.4	21	82	0	79	7	42	15	35	1.74
41049647--41049992	115	3.0	115	96	0	613	32	20	18	28	1.96
41050478--41050529	14	3.7	14	76	23	56	48	28	3	19	1.66
41050469--41050528	21	2.9	21	78	14	61	46	31	3	18	1.65
41050595--41050632	19	2.0	19	100	0	76	42	5	10	42	1.62
41050684--41050740	20	2.8	20	81	7	71	47	36	0	15	1.46
41054182--41054424	91	2.7	91	88	0	344	36	14	23	26	1.93
41055866--41055894	14	2.0	15	93	6	51	68	0	24	6	1.13
41057395--41057419	10	2.5	10	100	0	50	20	8	8	64	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41063852--41063882	16	1.9	16	100	0	62	32	12	6	48	1.67
41064063--41064311	135	1.8	135	89	1	392	27	8	10	54	1.62
41064545--41064570	11	2.4	11	100	0	52	0	0	26	73	0.84
41064501--41064831	172	1.9	173	87	4	488	23	11	17	47	1.80
41065070--41065100	16	2.0	15	93	6	53	29	12	12	45	1.80
41064596--41066571	946	2.1	955	83	4	2497	24	14	12	48	1.78
41066638--41067144	172	3.0	169	81	4	606	25	9	16	48	1.77
41067339--41067378	21	1.9	21	84	0	53	35	5	5	55	1.44
41067489--41067530	15	2.9	15	86	6	61	30	4	2	61	1.29
41067596--41067853	135	1.9	138	83	2	342	25	8	11	55	1.63
41067151--41067847	340	2.0	348	82	7	841	25	9	12	52	1.70
41091462--41091496	14	2.4	15	90	4	54	80	14	5	0	0.89
41092821--41092878	25	2.3	25	84	0	71	31	8	1	58	1.38
41093340--41093654	114	2.7	114	81	5	384	25	23	24	26	2.00
41093588--41093723	71	1.9	72	89	4	213	26	25	20	27	1.99
41093480--41093848	185	2.0	186	85	2	501	26	23	23	27	2.00
41093638--41093963	115	2.9	114	87	1	467	25	22	23	28	1.99
41093860--41094063	73	2.8	73	94	0	354	29	25	21	24	1.99
41093336--41094035	302	2.3	299	85	4	913	26	23	23	27	2.00
41094064--41094265	41	4.9	40	76	8	158	16	22	28	32	1.96
41094651--41094690	14	2.9	14	84	0	53	22	0	45	32	1.53
41095045--41095218	73	2.4	72	95	2	312	55	3	6	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41095192--41095272	24	3.2	24	78	13	99	44	0	9	45	1.37
41095189--41095272	28	3.1	28	70	13	86	46	0	9	44	1.36
41095322--41096035	365	2.0	365	91	0	1158	30	14	20	34	1.93
41096697--41096734	18	2.1	18	95	0	67	26	7	15	50	1.72
41097841--41097884	23	1.9	23	95	0	79	43	18	0	38	1.50
41098005--41098989	18	56.4	17	64	21	171	45	21	1	32	1.61
41097992--41098990	36	31.4	35	65	24	226	45	21	1	31	1.61
41098096--41098927	62	13.4	62	98	1	1614	45	20	1	32	1.60
41097999--41098923	27	36.9	25	63	24	176	45	20	1	32	1.60
41098832--41098995	25	6.3	25	73	11	107	43	21	1	32	1.63
41100858--41100950	21	4.4	21	87	0	114	34	17	43	5	1.72
41103870--41103913	2	22.0	2	100	0	88	0	50	0	50	1.00
41106765--41106822	30	1.9	30	89	0	89	31	8	13	46	1.74
41111312--41111441	39	3.3	38	82	4	161	20	23	15	41	1.89
41111423--41111627	54	3.8	54	87	2	277	26	20	14	38	1.91
41111662--41111861	39	5.1	39	76	6	161	18	23	18	40	1.91
41111645--41111793	79	1.9	79	82	8	187	20	21	16	40	1.91
41111842--41111944	54	1.9	54	87	0	152	23	22	17	36	1.94
41111838--41111955	54	2.2	53	77	10	139	22	21	17	38	1.93
41112020--41112119	24	4.2	24	79	5	105	34	13	14	39	1.84
41115429--41115481	26	2.0	26	85	7	72	37	20	5	35	1.77
41117795--41117828	7	4.7	7	88	3	50	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41118457--41118497	20	2.0	20	95	0	73	21	4	17	56	1.60
41127902--41127937	16	2.2	16	95	0	63	52	5	2	38	1.39
41127959--41127985	5	5.4	5	100	0	54	81	0	0	18	0.69
41128423--41128471	20	2.5	20	86	0	62	53	10	8	28	1.63
41131474--41131527	26	2.1	26	89	6	83	31	12	37	18	1.89
41134815--41135035	76	2.8	76	83	10	250	47	12	9	30	1.72
41135013--41135062	6	8.5	6	93	2	84	68	14	0	18	1.22
41134858--41135213	184	1.9	183	85	6	488	49	12	9	28	1.72
41135041--41135349	82	3.8	82	80	5	328	47	12	12	27	1.77
41135078--41135374	81	3.7	81	83	5	354	46	12	13	27	1.79
41136573--41136618	16	3.0	16	75	6	51	41	2	0	56	1.11
41138314--41138354	20	2.0	20	90	4	64	34	21	0	43	1.53
41140971--41141255	144	2.0	142	91	1	462	48	21	13	16	1.80
41146985--41147278	42	7.0	42	80	6	258	32	19	21	26	1.97
41146974--41147277	85	3.6	82	78	11	269	31	19	21	26	1.97
41147157--41147288	43	3.1	42	82	3	140	31	21	18	28	1.97
41147714--41147741	12	2.3	12	100	0	56	0	42	17	39	1.50
41147726--41147791	21	3.1	21	86	0	87	4	43	18	33	1.70
41152698--41153057	9	42.2	9	71	13	219	29	2	20	47	1.62
41152698--41152860	25	6.4	25	82	7	186	31	1	20	47	1.58
41152697--41153054	16	21.1	17	68	17	176	30	2	20	47	1.62
41152697--41153057	50	7.2	49	73	12	229	29	2	20	47	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41152873--41152945	37	2.0	37	97	0	137	30	2	17	49	1.61
41152910--41153194	25	11.5	25	70	16	157	29	2	19	48	1.60
41153106--41153277	12	14.3	12	71	19	101	35	0	15	48	1.45
41152787--41153164	197	1.9	196	88	5	566	29	1	19	49	1.59
41153189--41153277	48	1.9	44	86	8	124	38	0	13	48	1.43
41153106--41153259	36	4.2	37	72	12	113	35	0	15	48	1.45
41153187--41153279	21	4.1	21	73	14	62	36	0	15	48	1.45
41153109--41153333	97	2.3	96	84	8	278	35	0	16	48	1.46
41153354--41153400	20	2.3	20	82	10	60	55	2	2	40	1.24
41153350--41153402	21	2.5	22	84	9	74	56	1	1	39	1.21
41155835--41155864	10	3.0	10	100	0	60	40	20	0	40	1.52
41158018--41158085	15	4.9	14	71	16	52	41	35	0	23	1.55
41158021--41158058	15	2.5	15	86	0	58	36	42	0	21	1.53
41158569--41158808	41	5.9	40	76	3	237	34	23	24	17	1.96
41158608--41158807	82	2.4	82	93	0	337	34	24	24	17	1.96
41158569--41158805	123	1.9	123	81	1	287	34	24	24	17	1.96
41158858--41158950	40	2.3	40	81	5	109	16	27	23	32	1.96
41171828--41171876	23	2.1	23	88	0	71	26	61	2	10	1.39
41181337--41181375	17	2.4	16	84	16	53	58	0	10	30	1.31
41185144--41185651	58	8.8	58	99	0	998	31	6	16	45	1.73
41187586--41187618	15	2.2	15	100	0	66	36	18	0	45	1.49
41192153--41192186	5	6.8	5	100	0	68	82	0	0	17	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41193297--41193333	17	2.2	17	100	0	74	48	13	0	37	1.43
41196132--41196180	21	2.3	21	92	0	80	24	16	20	38	1.92
41203791--41203976	52	3.7	50	73	13	159	33	17	27	22	1.96
41203807--41203976	50	3.4	52	77	14	169	32	17	26	22	1.96
41205187--41205245	28	2.1	28	90	0	91	25	8	10	55	1.61
41210531--41210567	18	2.1	18	100	0	74	29	16	16	37	1.90
41218701--41218766	27	2.4	27	79	0	78	30	15	22	31	1.95
41223734--41223792	29	2.0	31	83	6	77	27	13	8	50	1.70
41224341--41224381	3	13.7	3	100	0	82	31	0	0	68	0.90
41229865--41229904	19	2.1	19	86	9	55	62	12	5	20	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153