genome.fa.s18.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  149  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46623606--46623680	33	2.2	34	90	2	116	42	12	8	37	1.71
46625257--46625295	18	2.2	17	82	13	51	5	17	2	74	1.12
46644318--46644350	17	1.9	17	100	0	66	21	12	36	30	1.90
46646059--46646115	30	2.0	28	86	6	78	38	19	7	35	1.79
46650158--46650196	18	2.2	18	85	0	51	61	2	23	12	1.43
46651902--46651973	33	2.1	34	87	2	101	40	8	12	38	1.73
46654080--46654118	18	2.2	17	82	13	51	5	17	2	74	1.12
46663142--46663174	18	1.9	17	88	11	50	39	24	9	27	1.85
46665358--46665458	29	3.5	29	89	1	150	26	14	28	29	1.95
46667666--46667720	28	2.0	28	85	7	76	49	10	9	30	1.69
46669662--46669745	42	2.0	42	100	0	168	30	16	11	40	1.85
46671624--46671856	118	2.0	118	96	0	430	36	21	23	19	1.95
46679279--46679414	68	2.0	68	98	0	263	30	19	16	34	1.93
46679987--46680022	15	2.4	15	100	0	72	36	8	11	44	1.70
46685864--46685893	14	2.1	15	93	6	53	36	30	6	26	1.82
46686600--46686739	37	4.0	38	76	18	176	3	27	10	59	1.46
46686638--46686695	28	2.1	28	93	0	98	1	31	6	60	1.33
46686563--46686732	66	2.7	65	91	5	276	3	28	9	58	1.46
46687286--46687319	7	4.9	7	88	0	50	2	11	26	58	1.47
46694483--46694690	91	2.3	91	92	0	335	45	3	4	46	1.39
46694605--46694665	28	2.2	28	85	5	81	45	0	3	50	1.17
46694523--46694665	44	3.2	43	69	20	121	46	2	3	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46694717--46694905	59	3.2	57	68	20	145	41	3	4	51	1.37
46694744--46694951	66	3.3	63	67	20	175	40	2	6	49	1.44
46694706--46694998	120	2.4	120	94	2	509	41	2	5	50	1.37
46694831--46694882	15	3.6	15	80	12	56	44	0	1	53	1.11
46694779--46694966	61	3.1	61	70	14	199	42	1	6	48	1.39
46694960--46695001	15	2.7	16	82	14	52	45	0	2	52	1.13
46694951--46694992	15	2.9	15	82	10	52	47	0	0	52	1.00
46695146--46695233	44	2.0	43	85	10	117	34	26	4	35	1.77
46695220--46695261	16	2.6	16	96	0	75	19	35	7	38	1.79
46701137--46701176	18	2.2	18	86	8	55	20	0	12	67	1.22
46701178--46701210	11	2.9	12	86	13	52	66	0	0	33	0.92
46701471--46701522	21	2.5	21	87	0	68	32	5	28	32	1.81
46704458--46704502	7	6.0	7	85	14	63	13	0	6	80	0.91
46704464--46704701	126	1.9	126	98	0	458	23	10	15	50	1.74
46704836--46705256	30	14.1	30	91	3	672	37	9	0	52	1.38
46704839--46705256	91	4.6	91	89	4	668	37	9	0	51	1.39
46704836--46705256	61	7.0	60	91	4	654	37	9	0	52	1.38
46705381--46705468	41	2.1	41	83	6	106	31	28	15	23	1.96
46705608--46705675	35	2.0	35	82	8	86	55	2	1	39	1.24
46705797--46705862	19	3.3	19	72	12	60	59	19	3	18	1.51
46705781--46705844	22	3.0	22	66	13	62	57	20	7	14	1.61
46705781--46705862	41	2.0	41	95	0	146	57	20	6	15	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46706134--46706198	30	2.2	30	83	5	78	26	46	0	27	1.53
46707452--46707485	16	2.1	16	88	5	50	70	2	2	23	1.15
46707738--46707800	27	2.3	27	81	5	74	66	11	3	19	1.36
46712762--46712807	21	2.2	21	88	7	67	26	2	47	23	1.63
46712840--46713110	143	1.9	144	87	6	406	32	12	14	40	1.83
46714553--46714670	41	2.9	41	83	1	148	27	25	22	23	2.00
46714718--46714840	40	3.1	40	80	5	151	23	18	20	37	1.94
46714725--46714857	40	3.3	40	74	16	116	24	20	21	34	1.96
46714846--46714871	12	2.2	12	100	0	52	46	23	15	15	1.83
46714890--46715059	30	6.0	30	85	11	259	39	10	0	50	1.37
46714890--46715043	82	1.9	84	94	2	276	38	10	0	51	1.36
46715539--46715567	15	1.9	15	100	0	58	34	20	17	27	1.95
46720791--46720855	33	1.9	32	81	9	76	33	26	24	15	1.95
46720739--46720935	76	2.6	76	91	0	313	32	27	18	20	1.97
46720911--46720962	27	1.9	27	96	0	95	28	30	21	19	1.97
46720834--46721165	101	3.3	102	91	1	531	31	27	20	20	1.98
46721113--46721190	27	2.9	27	100	0	156	26	30	25	16	1.97
46723001--46723040	19	2.1	19	90	0	62	60	0	17	22	1.37
46725802--46725897	39	2.5	39	91	0	147	10	59	2	28	1.42
46725802--46725933	39	3.4	39	84	2	113	11	56	1	30	1.43
46725838--46725945	39	2.8	39	81	0	126	10	57	1	30	1.42
46725874--46725961	39	2.2	39	82	6	97	13	55	1	29	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46729360--46729409	18	2.5	20	87	9	68	72	4	20	4	1.18
46731164--46731243	33	2.4	34	81	6	103	36	6	12	45	1.67
46746750--46746855	48	2.2	48	85	9	137	14	24	1	59	1.45
46749467--46749513	20	2.3	20	81	0	58	23	12	34	29	1.92
46759713--46759797	35	2.3	34	82	13	98	11	27	2	58	1.45
46759733--46759807	12	6.3	12	70	14	57	12	26	1	60	1.40
46759840--46759882	14	2.9	15	86	13	54	9	16	2	72	1.21
46762150--46762207	24	2.5	23	81	16	66	62	0	5	32	1.18
46762671--46762749	37	2.1	37	90	0	122	24	18	31	25	1.98
46763986--46764030	20	2.2	20	84	7	56	15	20	0	64	1.29
46764003--46764044	20	2.0	23	86	13	63	14	16	0	69	1.20
46770443--46770487	18	2.4	18	81	3	54	4	24	4	66	1.29
46772202--46772243	7	5.9	7	83	5	57	23	0	33	42	1.55
46772194--46772236	22	2.0	22	90	0	68	23	0	32	44	1.54
46772217--46772347	57	2.3	57	78	3	140	22	0	35	41	1.59
46778548--46778627	25	3.2	26	79	8	78	20	27	21	31	1.98
46785578--46785607	14	2.1	15	93	6	53	36	30	6	26	1.82
46815162--46815215	28	1.9	28	88	7	83	27	9	11	51	1.67
46818701--46818759	27	2.1	27	82	14	68	67	1	22	8	1.26
46819953--46820007	28	2.0	28	85	7	76	32	7	10	49	1.65
46831336--46831410	33	2.2	34	92	2	125	44	12	6	37	1.68
46832917--46832955	18	2.2	17	82	13	51	5	17	2	74	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46836393--46836432	18	2.2	18	95	0	71	22	30	7	40	1.81
46851616--46851793	27	6.6	27	83	3	205	26	15	28	29	1.96
46851617--46851772	82	1.9	81	88	3	233	26	15	28	29	1.96
46851613--46851793	82	2.2	81	83	2	229	27	15	27	29	1.96
46857150--46857186	18	2.0	19	89	5	58	75	2	16	5	1.10
46867932--46868006	33	2.2	33	88	6	107	41	13	6	38	1.70
46869740--46869778	18	2.2	17	82	13	51	5	17	2	74	1.12
46874011--46874072	31	2.0	31	100	0	124	29	19	16	35	1.93
46877338--46877412	33	2.2	34	83	6	100	38	5	12	44	1.64
46877362--46877709	174	2.0	174	99	0	687	31	9	18	40	1.82
46880498--46880534	8	4.9	8	87	12	51	56	29	0	13	1.37
46881540--46881578	20	1.9	21	84	5	53	46	0	12	41	1.42
46881995--46882040	20	2.2	21	96	3	85	34	17	8	39	1.80
46890434--46890483	21	2.4	20	80	9	64	76	0	22	2	0.89
46890441--46890481	21	1.9	22	90	5	66	75	0	21	2	0.92
46896700--46896775	25	3.1	25	74	9	66	50	6	17	26	1.70
46903317--46903366	18	2.5	20	87	9	68	74	2	20	4	1.08
46905045--46905125	33	2.5	34	86	6	114	38	7	12	41	1.71
46905663--46906029	179	2.1	179	97	0	700	35	18	16	29	1.93
46914479--46914520	22	2.0	22	85	4	59	69	4	11	14	1.34
46916361--46916390	13	2.3	13	94	0	51	33	3	13	50	1.58
46916485--46916676	50	3.8	50	90	3	298	26	22	31	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46919275--46919353	37	2.1	37	86	4	106	24	30	18	26	1.98
46919472--46919986	49	10.6	49	95	1	914	29	28	8	33	1.86
46925469--46926048	290	2.0	290	100	0	1160	35	12	19	32	1.89
46925842--46926634	396	2.0	396	99	0	1559	33	13	21	31	1.92
46929074--46929103	13	2.3	13	94	0	51	33	3	13	50	1.58
46929198--46929440	50	4.8	50	91	0	369	25	23	30	20	1.98
46936042--46936235	89	2.2	89	100	0	388	32	18	20	28	1.96
46958293--46958337	20	2.2	20	92	0	72	37	17	22	22	1.94
46958322--46958377	20	2.8	19	81	5	58	33	14	32	19	1.92
46961401--46961450	18	2.6	19	87	9	66	4	20	2	74	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153