genome.fa.s18.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  51  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16893479--16893575	43	2.3	43	89	1	142	34	25	14	25	1.94
16893440--16893584	43	3.4	43	81	4	134	33	25	14	26	1.94
16895775--16895849	33	2.3	33	81	9	82	25	20	18	36	1.95
16898432--16898456	10	2.5	10	100	0	50	48	8	16	28	1.74
16902746--16902777	15	2.1	15	100	0	64	31	15	34	18	1.93
16910728--16910772	20	2.3	20	80	3	56	42	8	11	37	1.72
16919312--16919423	27	4.2	26	80	12	109	16	23	22	38	1.93
16919312--16919423	54	2.1	54	84	3	145	16	23	22	38	1.93
16921264--16921356	27	3.4	26	80	12	98	16	23	22	37	1.93
16928850--16928961	27	4.2	26	85	7	143	16	24	23	36	1.94
16928850--16928961	54	2.1	54	89	3	172	16	24	23	36	1.94
16935028--16935216	55	3.5	53	81	5	209	23	23	18	34	1.96
16935417--16935500	44	1.9	44	83	9	109	26	22	11	39	1.89
16943162--16943514	175	2.0	175	100	0	706	41	22	5	30	1.77
16951261--16951444	40	4.6	40	83	6	205	23	21	27	27	1.99
16951261--16951441	80	2.3	81	84	9	230	23	21	27	27	1.99
16959575--16959604	15	2.0	15	100	0	60	53	6	13	26	1.64
16961883--16962016	40	3.4	41	69	13	118	29	16	23	30	1.96
16965399--16965805	203	2.0	203	99	0	796	37	23	21	16	1.93
16967496--16967537	17	2.5	17	88	0	66	26	4	7	61	1.42
16971145--16971175	7	4.4	7	95	0	53	67	0	0	32	0.91
16982717--16982800	37	2.3	37	100	0	168	29	25	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16987407--16987468	19	3.2	19	90	4	97	35	9	19	35	1.85
16992405--16992452	13	3.5	13	77	8	51	83	0	12	4	0.79
16992407--16992452	20	2.3	20	85	7	58	84	0	10	4	0.75
16992405--16992453	21	2.4	22	86	10	68	81	0	12	6	0.86
16993455--16994111	44	14.9	44	69	15	306	30	15	26	28	1.96
16993454--16994056	88	6.9	87	71	16	372	29	14	26	29	1.95
16993450--16994086	176	3.6	176	89	1	920	29	14	26	29	1.95
16994279--16994427	45	3.3	45	78	1	147	32	14	27	25	1.95
16994775--16994843	19	3.7	19	90	7	115	36	11	14	37	1.83
16994765--16994842	36	2.2	35	82	15	97	35	11	14	38	1.82
17004929--17004982	3	18.0	3	100	0	108	66	0	0	33	0.92
17007495--17007610	50	2.3	52	88	5	166	34	16	12	36	1.87
17012559--17012614	13	4.2	13	74	17	53	46	10	1	41	1.49
17014357--17014409	20	2.7	20	79	2	63	28	1	3	66	1.20
17015983--17016136	42	3.7	41	85	4	193	33	15	21	29	1.94
17023512--17023664	42	3.6	42	85	4	202	33	15	20	30	1.94
17026577--17026646	27	2.6	27	86	2	97	22	20	21	35	1.96
17028611--17028640	13	2.3	13	94	0	51	60	0	0	40	0.97
17028631--17028680	23	2.1	25	85	7	68	78	4	8	10	1.09
17029513--17029677	44	3.6	44	68	13	127	20	18	23	38	1.94
17029534--17029727	93	2.1	93	90	0	298	20	17	21	40	1.92
17033211--17033251	11	3.7	11	80	0	55	19	14	9	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17033280--17033309	11	2.7	11	100	0	60	26	0	0	73	0.84
17033293--17033349	30	1.9	30	88	0	87	28	3	14	54	1.56
17033473--17033506	11	3.0	12	87	12	54	67	0	0	32	0.91
17036623--17036884	140	1.9	140	81	3	321	29	17	28	24	1.97
17039820--17039863	21	2.1	21	87	8	63	65	0	0	34	0.93
17041945--17041998	21	2.6	21	76	5	56	29	27	25	16	1.97
17043374--17043523	3	49.7	3	72	13	87	34	6	1	58	1.31
17043374--17043523	14	10.5	15	68	18	63	34	6	1	58	1.31
17043479--17043523	23	2.0	23	86	0	63	33	6	2	57	1.37
17043609--17043641	17	1.9	17	88	11	50	18	3	0	78	0.87
17045669--17045720	15	3.3	15	82	12	52	48	13	13	25	1.79
17046722--17046831	26	4.2	26	97	0	184	33	5	24	36	1.79
17052181--17052288	26	4.2	26	93	0	189	32	7	24	36	1.83
17053775--17053827	26	2.0	26	82	7	63	37	20	15	26	1.92
17057837--17057882	19	2.5	19	80	13	53	58	4	0	36	1.18
17061942--17062163	46	4.8	46	83	9	290	20	21	29	28	1.98
17066444--17066514	35	2.1	34	91	2	115	36	9	22	30	1.87
17075784--17075845	10	6.1	10	88	1	61	67	0	8	24	1.17
17075786--17075845	20	3.0	20	85	0	84	68	0	8	23	1.16
17075842--17075894	26	2.0	27	82	10	65	54	11	0	33	1.36
17076503--17076683	95	1.9	97	88	2	276	30	25	15	27	1.96
17077463--17077519	15	3.7	15	80	17	64	77	0	1	21	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17077468--17077522	11	4.8	11	80	14	67	76	0	1	21	0.88
17077468--17077519	21	2.2	25	87	12	76	76	0	1	21	0.87
17079671--17079748	38	2.1	38	100	0	156	21	25	15	37	1.93
17081247--17081306	10	6.0	10	84	11	79	68	1	8	21	1.25
17089608--17089641	17	2.0	17	100	0	68	52	17	11	17	1.73
17094781--17094809	14	2.1	14	100	0	58	27	13	6	51	1.66
17097617--17097695	24	3.3	23	77	12	79	34	21	25	18	1.96
17100268--17100343	34	2.2	34	83	4	100	32	21	22	23	1.98
17100766--17100800	18	1.9	18	88	11	54	20	42	25	11	1.85
17109401--17109677	139	2.0	139	98	0	536	31	9	14	45	1.77
17115885--17115917	16	2.1	16	94	0	57	84	0	0	15	0.61
17115875--17115924	22	2.3	22	83	13	59	80	2	2	16	0.91
17126016--17126055	18	2.2	18	100	0	80	25	17	5	52	1.64
17130619--17130823	102	2.0	102	95	0	365	25	21	14	37	1.92
17141198--17141280	41	2.0	41	90	0	130	33	16	27	21	1.95
17142006--17142050	23	1.9	23	82	13	56	31	0	28	40	1.57
17143575--17143890	49	6.7	45	78	11	262	21	28	20	28	1.98
17143624--17143889	95	2.8	94	80	8	301	21	28	20	28	1.98
17152826--17153050	44	5.1	44	83	2	247	33	20	18	27	1.96
17152826--17153050	88	2.6	88	86	1	308	33	20	18	27	1.96
17154680--17154710	4	8.0	4	92	7	55	25	0	0	74	0.82
17156004--17156054	20	2.5	20	83	0	75	17	33	31	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17156653--17156808	48	3.1	48	77	16	188	41	23	1	33	1.65
17158017--17158064	19	2.6	18	83	9	53	2	27	2	68	1.11
17158260--17158297	3	12.3	3	94	5	67	65	0	0	34	0.93
17158293--17158320	4	7.0	4	100	0	56	75	0	0	25	0.81
17159451--17159493	19	2.3	19	83	0	59	11	9	2	76	1.10
17159515--17159557	13	3.2	13	86	3	50	18	0	4	76	0.95
17159511--17159544	9	3.8	9	85	14	52	17	0	2	79	0.86
17159561--17159627	22	3.0	23	79	14	68	41	0	4	53	1.21
17159577--17159730	36	4.5	32	85	11	139	41	0	1	55	1.15
17159611--17159717	13	8.8	12	69	21	64	40	0	1	57	1.16
17159582--17159637	23	2.4	25	82	17	75	41	0	0	58	0.98
17159632--17159766	22	5.8	23	63	24	61	42	0	1	54	1.14
17159624--17159667	22	2.1	20	87	8	61	38	0	2	59	1.10
17159599--17159737	36	4.0	35	90	3	203	41	0	1	56	1.13
17159599--17159737	71	2.0	68	87	6	199	41	0	1	56	1.13
17159694--17159772	21	3.5	21	72	16	61	45	0	1	53	1.08
17159705--17159755	20	2.4	21	90	6	77	43	0	0	56	0.99
17159747--17159805	14	4.4	13	78	6	55	50	0	0	49	1.00
17159770--17159806	13	2.7	14	84	15	51	54	0	0	45	1.00
17159841--17159924	18	4.8	16	71	26	55	78	2	4	14	1.01
17159892--17159942	26	1.9	26	84	4	66	80	1	5	11	0.97
17166522--17166551	14	2.1	14	100	0	60	0	40	6	53	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17172666--17172731	28	2.4	27	80	5	71	56	3	6	34	1.40
17174433--17174609	90	2.0	89	80	5	196	25	23	19	30	1.98
17174439--17174720	132	2.1	135	80	3	311	25	26	18	29	1.98
17186735--17188139	710	2.0	696	93	1	2396	34	16	20	28	1.94
17190971--17191102	39	3.5	36	78	11	140	49	3	15	31	1.60
17190971--17191113	38	3.8	38	82	7	157	48	4	16	30	1.64
17192749--17192787	19	1.9	19	85	10	51	30	20	5	43	1.73
17199111--17199154	21	2.1	22	87	8	65	50	13	6	29	1.68
17202392--17202457	28	2.4	27	80	5	71	56	3	6	34	1.40
17218580--17218649	34	2.1	34	94	0	122	27	30	15	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153