genome.fa.s18.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  56  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18273072--18273135	20	3.2	21	80	10	64	40	4	0	54	1.21
18273099--18273134	18	1.9	19	94	5	65	44	5	0	50	1.25
18273085--18273135	19	2.7	20	80	17	63	41	3	0	54	1.19
18273168--18273327	87	1.8	86	86	4	232	28	11	20	40	1.86
18282129--18282167	19	2.1	19	85	4	53	33	2	7	56	1.41
18299297--18299346	22	2.1	22	85	10	64	52	2	0	46	1.12
18302560--18302612	17	3.2	16	76	12	54	1	22	0	75	0.90
18308050--18308111	24	2.6	23	85	7	79	35	17	27	19	1.94
18314044--18314070	13	2.1	13	100	0	54	29	7	22	40	1.81
18314621--18314664	22	2.0	21	91	4	70	40	4	13	40	1.65
18318360--18318406	22	2.2	22	75	20	55	59	0	0	40	0.97
18318373--18318416	21	2.0	22	87	12	65	54	0	0	45	0.99
18318621--18318664	21	2.2	20	84	8	54	59	6	0	34	1.24
18322141--18322199	26	2.2	26	82	11	66	38	1	1	57	1.19
18329601--18329662	18	3.5	18	68	12	56	35	8	1	54	1.39
18332550--18332745	104	1.9	104	90	2	313	36	10	20	33	1.86
18335461--18335597	63	2.2	63	86	0	193	28	5	30	35	1.81
18335461--18335619	63	2.5	63	82	0	174	27	6	32	33	1.83
18336556--18336595	21	2.0	20	85	5	53	75	2	5	17	1.10
18336607--18336633	14	1.9	14	100	0	54	40	0	29	29	1.57
18337938--18337980	17	2.5	17	85	11	52	39	0	2	58	1.11
18337938--18338006	18	3.7	18	80	7	75	47	0	2	49	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18337983--18338028	19	2.3	21	85	7	60	67	0	0	32	0.91
18338122--18338163	9	4.6	9	80	14	50	66	2	0	30	1.04
18338084--18338178	47	2.0	47	84	8	122	64	4	2	29	1.24
18338083--18338152	18	3.8	18	73	14	61	67	4	1	27	1.18
18341570--18341628	21	2.8	20	75	7	55	16	23	15	44	1.86
18341594--18341700	42	2.5	42	81	0	106	15	25	14	43	1.85
18341633--18341728	42	2.3	42	81	0	111	14	25	17	42	1.87
18342604--18342637	17	2.0	17	100	0	68	47	0	17	35	1.48
18344874--18344920	23	2.0	23	83	8	58	57	2	14	25	1.49
18347510--18347574	23	2.8	24	78	19	66	33	1	1	63	1.13
18360879--18360915	14	2.6	14	91	0	56	27	0	27	45	1.54
18360965--18361030	14	4.7	14	75	19	57	24	1	31	42	1.64
18361156--18361209	21	2.6	21	79	5	65	22	0	44	33	1.53
18365099--18365298	43	4.7	43	86	0	240	26	16	29	28	1.97
18368528--18370006	773	1.9	772	90	1	2336	32	18	17	31	1.94
18407588--18407625	19	2.0	20	84	5	51	73	5	21	0	1.02
18408229--18408300	19	3.7	19	72	3	72	61	0	1	37	1.05
18409088--18409121	18	1.9	18	88	5	52	29	0	5	64	1.17
18409423--18409473	24	2.1	24	88	0	75	7	5	11	74	1.21
18410928--18411000	29	2.6	27	74	16	67	35	13	4	46	1.63
18423713--18423800	22	4.0	22	82	2	106	32	19	27	20	1.97
18424879--18424917	20	2.0	20	89	0	60	43	17	2	35	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18428238--18428329	46	2.0	46	100	0	184	41	21	8	28	1.83
18434733--18434759	11	2.5	11	100	0	54	51	0	0	48	1.00
18447225--18447369	21	6.9	21	81	1	148	19	39	14	26	1.90
18447225--18447369	42	3.5	42	83	1	166	19	39	14	26	1.90
18447246--18447390	63	2.3	63	80	2	157	20	37	15	26	1.92
18447434--18447492	21	2.8	21	92	0	91	28	37	10	23	1.88
18447440--18447513	21	3.5	21	88	3	96	27	39	10	22	1.87
18447461--18447519	21	2.8	21	89	5	84	27	42	10	20	1.84
18447488--18447547	21	2.9	21	84	0	75	23	48	8	20	1.76
18447488--18447568	42	1.9	42	82	5	101	23	45	8	22	1.79
18447515--18447716	21	9.6	21	86	3	158	21	46	7	25	1.77
18447515--18447723	63	3.3	63	77	2	188	21	44	8	24	1.80
18447719--18447785	21	3.2	21	78	0	71	31	38	8	20	1.84
18452713--18452771	23	2.6	23	91	0	91	20	27	20	32	1.97
18454626--18454650	13	1.9	13	100	0	50	24	8	28	40	1.83
18455272--18455319	3	16.0	3	77	0	51	27	37	6	29	1.81
18455266--18455303	12	3.2	12	96	0	67	26	42	5	26	1.76
18460359--18460528	71	2.4	71	97	0	322	54	12	5	27	1.61
18460955--18461034	18	4.4	18	98	0	142	41	12	13	32	1.82
18464522--18464578	29	2.0	29	92	0	96	36	14	38	10	1.80
18466686--18466805	60	2.0	60	100	0	240	36	15	11	36	1.83
18468567--18468598	13	2.4	14	85	15	50	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18472453--18473964	756	2.0	756	100	0	3024	35	17	9	37	1.83
18475854--18475901	17	2.9	17	87	3	71	50	16	2	31	1.57
18476521--18476573	20	2.7	19	80	11	54	62	3	1	32	1.24
18476521--18476573	19	2.7	21	82	8	58	62	3	1	32	1.24
18476538--18476593	27	2.1	27	83	12	71	57	5	3	33	1.39
18476602--18476649	11	4.7	10	85	10	62	70	0	0	29	0.87
18476614--18476649	12	3.3	11	92	7	56	75	0	0	25	0.81
18476602--18476656	22	2.7	19	81	13	65	69	0	1	29	0.99
18481387--18481441	22	2.2	27	84	15	75	69	3	3	23	1.21
18481408--18481476	29	2.4	29	81	13	81	71	1	0	27	0.95
18482106--18482148	19	2.3	19	95	0	77	27	16	20	34	1.94
18483320--18483531	63	3.4	63	83	3	223	27	20	27	25	1.99
18485874--18485915	21	2.0	22	85	4	59	33	16	9	40	1.81
18487849--18487907	28	2.1	29	81	6	68	23	23	15	37	1.93
18488812--18488857	4	11.8	4	84	13	60	80	0	19	0	0.71
18488810--18488858	23	2.1	24	92	3	82	81	0	18	0	0.69
18492644--18492694	26	2.0	26	92	0	84	17	19	23	39	1.92
18492777--18492838	24	2.6	24	80	10	72	17	22	20	38	1.93
18493433--18493460	11	2.5	11	100	0	56	21	0	0	78	0.75
18495419--18495555	38	3.6	38	79	8	127	24	18	26	30	1.98
18499941--18500030	46	2.1	41	84	13	119	33	13	14	38	1.85
18502854--18502894	20	2.1	20	86	4	57	65	0	4	29	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18502864--18502903	20	2.2	18	86	13	55	65	0	5	30	1.14
18503637--18503693	19	2.9	18	78	14	51	59	0	5	35	1.20
18503765--18503804	21	1.9	21	84	0	53	45	2	2	50	1.28
18509585--18509638	19	2.8	19	71	0	54	44	11	11	33	1.75
18514115--18514149	6	5.8	6	96	0	61	2	51	14	31	1.57
18516079--18516257	50	3.6	50	85	6	231	29	27	13	29	1.95
18516074--18516414	51	6.8	50	73	9	259	29	26	15	27	1.96
18516074--18516414	102	3.4	99	80	7	361	29	26	15	27	1.96
18518421--18518513	47	1.9	49	82	8	120	50	6	27	15	1.68
18528777--18528807	4	7.8	4	100	0	62	22	0	0	77	0.77
18531871--18532207	174	1.9	175	85	5	459	35	16	16	30	1.91
18533837--18533870	16	2.1	16	88	0	50	50	14	17	17	1.79
18536671--18536711	21	2.0	21	90	0	64	29	21	29	19	1.98
18538617--18538650	16	2.1	16	88	0	50	50	14	17	17	1.79
18544412--18544470	25	2.5	25	81	10	63	35	3	5	55	1.38
18544433--18544487	20	2.6	21	80	16	60	45	1	3	49	1.30
18545859--18545903	19	2.2	20	92	7	74	26	20	22	31	1.98
18551228--18551383	45	3.5	45	83	5	199	37	16	18	26	1.92
18551223--18551444	90	2.5	90	80	1	239	39	18	18	24	1.92
18551228--18551444	45	4.8	45	78	6	192	39	17	17	24	1.92
18552552--18552586	18	2.0	18	94	5	63	11	45	31	11	1.76
18558666--18558699	13	2.6	13	85	0	50	64	23	2	8	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18559332--18559400	21	3.4	21	76	11	63	47	0	1	50	1.09
18559338--18559395	29	2.0	28	80	9	64	46	0	1	51	1.11
18564853--18564899	23	2.1	22	88	7	69	57	2	0	40	1.11
18565659--18565836	83	2.1	84	84	5	227	52	6	18	23	1.68
18565658--18565836	28	6.4	27	83	2	169	51	6	18	22	1.68
18567871--18567915	17	2.7	17	83	13	58	24	2	26	46	1.64
18570063--18570128	33	2.0	33	96	0	123	31	13	12	42	1.81
18573824--18573889	13	5.1	13	76	7	71	36	22	6	34	1.79
18580804--18580830	6	4.5	6	100	0	54	18	18	14	48	1.82
18580810--18581054	45	5.5	45	86	2	332	21	19	18	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153