genome.fa.s18.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  102  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32042439--32042481	12	3.4	12	78	12	50	46	9	0	44	1.35
32042438--32042482	14	3.4	14	81	9	58	44	8	0	46	1.34
32042764--32042796	16	2.0	17	88	5	50	45	9	0	45	1.35
32042905--32042967	33	1.9	33	87	6	92	23	3	17	55	1.56
32045797--32045848	26	2.0	26	88	0	77	48	1	3	46	1.31
32045825--32045881	21	2.7	21	83	0	60	38	1	1	57	1.19
32051630--32051800	27	6.3	27	82	2	218	18	19	18	43	1.88
32055797--32055834	19	2.1	17	90	9	58	57	2	0	39	1.12
32056244--32056277	16	2.2	16	89	5	52	23	0	0	76	0.79
32068586--32068889	40	7.7	40	91	4	440	25	27	21	25	1.99
32079925--32079987	30	2.1	30	96	0	117	33	11	7	47	1.68
32080390--32080454	6	11.2	6	76	18	66	12	13	0	73	1.09
32080381--32080434	25	2.2	25	86	6	74	11	14	3	70	1.29
32080390--32080454	26	2.5	27	87	7	98	12	13	0	73	1.09
32080390--32080454	32	2.0	32	91	5	105	12	13	0	73	1.09
32110171--32110341	6	28.5	6	100	0	342	49	16	0	33	1.46
32112207--32112235	12	2.4	12	100	0	58	17	0	6	75	1.01
32124857--32124881	8	3.1	8	100	0	50	24	0	0	76	0.80
32126978--32127078	49	2.1	49	84	3	132	26	13	28	30	1.94
32130909--32130959	26	2.0	26	88	0	75	31	23	19	25	1.98
32141430--32141518	40	2.2	40	80	6	99	34	20	23	21	1.96
32141582--32141697	61	1.9	61	92	0	196	25	21	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32141645--32141793	41	3.6	40	83	3	181	20	19	28	31	1.97
32142062--32142110	14	3.5	14	82	0	62	18	0	34	46	1.49
32142187--32142238	20	2.4	21	90	9	79	23	1	28	46	1.63
32143377--32143409	9	3.7	9	91	0	57	33	12	27	27	1.92
32143498--32143543	19	2.4	19	85	3	56	21	0	6	71	1.08
32144036--32144121	44	2.0	44	92	0	145	37	19	11	31	1.88
32145912--32145954	22	2.0	22	95	0	77	44	30	16	9	1.79
32147747--32147771	11	2.3	11	100	0	50	0	8	0	92	0.40
32148793--32148846	27	1.9	29	85	7	76	74	0	7	18	1.05
32148800--32148855	6	8.8	6	80	19	53	76	0	5	17	0.96
32148792--32148852	27	2.3	25	78	15	68	75	0	6	18	1.01
32149665--32149710	24	1.9	24	95	0	83	30	32	13	23	1.93
32157598--32157651	21	2.5	21	82	11	56	50	11	1	37	1.49
32170255--32170352	23	4.3	23	90	2	162	31	26	21	20	1.98
32170262--32170350	45	2.0	45	95	0	160	31	26	22	19	1.97
32175168--32175575	222	1.8	219	83	7	531	31	7	30	29	1.85
32182255--32182305	24	2.1	25	88	3	77	29	5	7	56	1.51
32184579--32184683	39	2.6	39	86	5	122	24	22	27	24	2.00
32184539--32184683	40	3.7	40	81	12	165	24	23	27	24	2.00
32184540--32184702	40	4.1	39	79	10	100	25	23	28	23	2.00
32184539--32184689	79	1.9	80	82	6	191	25	23	27	23	2.00
32201422--32202175	50	15.1	50	73	2	584	33	24	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32201402--32202175	100	7.8	100	89	0	1109	32	24	19	23	1.97
32208900--32208937	12	2.9	13	81	14	51	44	0	18	36	1.50
32208901--32208938	14	2.9	13	88	7	51	44	0	18	36	1.50
32212542--32212601	27	2.2	27	84	0	75	26	15	21	36	1.93
32212552--32212800	27	9.3	27	80	2	196	18	15	23	43	1.87
32212569--32212800	107	2.2	107	82	2	268	17	14	24	43	1.86
32213054--32213084	16	1.9	16	100	0	62	22	45	19	12	1.84
32218277--32218371	30	3.2	30	86	0	118	23	33	23	20	1.97
32230212--32230261	26	1.9	26	91	0	82	28	26	18	28	1.98
32239563--32239740	27	6.6	27	84	3	205	29	28	15	26	1.96
32239584--32239739	82	1.9	81	88	3	233	29	28	15	26	1.96
32247789--32247845	16	3.6	16	82	0	69	22	17	49	10	1.77
32248206--32248231	6	4.3	6	100	0	52	69	0	0	30	0.89
32249074--32249287	106	2.0	106	100	0	428	36	21	9	31	1.86
32249906--32250153	43	5.8	43	85	3	250	27	33	17	21	1.96
32249906--32250151	86	2.9	84	81	5	278	26	34	17	21	1.96
32250493--32250558	19	3.3	19	76	12	78	59	22	3	15	1.50
32250477--32250558	41	2.0	41	97	0	155	58	23	4	13	1.54
32254488--32254530	20	2.2	20	86	0	59	13	2	4	79	1.00
32254878--32254925	7	6.9	7	75	0	51	27	47	0	25	1.52
32254878--32254925	21	2.3	21	96	0	87	27	47	0	25	1.52
32255115--32255169	24	2.3	23	87	3	83	60	1	0	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32255278--32255316	15	2.7	15	88	4	53	35	35	2	25	1.70
32255666--32255925	41	6.3	41	88	0	333	28	31	18	21	1.97
32256892--32257059	23	7.3	23	81	0	183	30	22	20	26	1.98
32256892--32257059	46	3.7	46	87	0	228	30	22	20	26	1.98
32259005--32259049	22	2.0	23	86	4	65	55	4	2	37	1.32
32263885--32263918	17	2.0	17	88	0	50	64	0	2	32	1.08
32267596--32267647	25	2.2	24	86	6	70	7	28	0	63	1.22
32273681--32273785	39	2.6	39	86	5	122	24	22	27	24	2.00
32273641--32273804	40	4.1	40	80	12	169	25	23	27	24	2.00
32273641--32273791	79	1.9	80	82	6	191	25	23	27	23	2.00
32291531--32291560	15	1.9	16	93	6	53	43	0	0	56	0.99
32294136--32294182	24	1.9	24	86	4	67	36	0	38	25	1.56
32295296--32295414	27	4.4	27	78	8	125	46	15	15	21	1.84
32295365--32295448	27	3.1	27	84	6	91	36	17	19	26	1.94
32295309--32295411	54	1.9	54	88	4	154	46	17	13	22	1.83
32306045--32306075	6	5.2	6	100	0	62	51	0	0	48	1.00
32311764--32311799	3	12.3	3	94	5	65	69	0	0	30	0.89
32313400--32313546	74	2.0	74	97	0	276	40	21	12	25	1.88
32314551--32314618	25	2.7	25	90	0	109	25	23	19	32	1.97
32315255--32315307	20	2.7	20	80	16	65	62	1	20	15	1.42
32315755--32315784	16	1.9	16	93	6	53	30	0	20	50	1.49
32321267--32321323	30	1.9	30	96	0	105	21	35	0	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32321271--32321335	30	2.2	30	82	0	76	18	40	0	41	1.51
32321456--32321494	19	2.1	19	85	0	51	28	28	0	43	1.55
32322951--32322994	23	1.9	22	82	17	54	36	25	0	38	1.56
32323093--32323228	50	2.7	52	82	10	181	30	27	16	25	1.97
32326525--32326671	48	3.1	48	87	7	230	31	27	12	27	1.93
32326519--32326660	44	3.1	44	86	7	212	31	29	11	27	1.91
32329535--32329587	25	2.0	27	82	13	67	33	5	5	54	1.47
32329655--32329685	15	2.1	15	93	0	53	45	3	6	45	1.45
32332564--32332609	23	2.0	23	87	8	67	13	4	32	50	1.61
32332893--32333422	179	3.0	179	91	1	848	27	20	20	31	1.97
32332886--32333453	44	12.7	44	71	7	304	27	20	21	30	1.98
32333437--32333895	143	3.2	142	84	3	598	29	22	18	29	1.98
32334763--32334787	11	2.3	11	100	0	50	0	0	8	92	0.40
32335191--32335265	1	75.0	1	75	0	69	4	1	6	88	0.69
32335205--32335265	11	5.4	11	86	7	77	4	0	4	90	0.56
32339525--32339603	4	19.8	4	73	8	54	64	2	2	30	1.20
32340798--32341150	179	2.0	178	88	1	528	28	19	20	31	1.97
32341115--32341485	143	2.6	142	83	3	456	26	22	20	29	1.98
32342828--32342884	10	5.4	10	76	19	62	1	3	8	85	0.77
32342828--32342882	7	7.7	7	78	11	58	1	3	9	85	0.79
32342828--32342884	15	3.7	15	82	13	62	1	3	8	85	0.77
32346505--32346537	11	3.0	11	91	8	50	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32350973--32351003	16	1.9	16	100	0	62	80	0	0	19	0.71
32353989--32354024	16	2.4	14	86	13	54	33	2	8	55	1.44
32355333--32355362	16	1.9	15	93	6	51	50	0	3	46	1.18
32356667--32356739	27	2.6	26	79	12	65	57	5	4	32	1.41
32356687--32356743	30	1.9	30	89	7	89	57	3	3	35	1.33
32356906--32356940	17	2.1	17	89	10	54	54	0	11	34	1.37
32357078--32357145	20	3.3	20	76	15	68	67	2	1	27	1.13
32357119--32357148	7	4.4	7	91	8	53	73	0	0	26	0.84
32357445--32357489	21	2.2	20	92	7	74	40	13	11	35	1.80
32357476--32357501	12	2.2	12	100	0	52	42	15	7	34	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153