genome.fa.s18.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  104  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32633647--32633696	19	2.7	18	80	17	57	24	4	4	68	1.24
32645089--32645169	42	2.0	39	88	7	117	27	20	2	49	1.62
32647160--32647211	21	2.5	21	87	0	77	30	30	11	26	1.92
32647371--32647433	23	2.7	23	78	7	56	46	19	3	31	1.65
32648865--32649009	76	1.9	76	94	0	254	31	20	15	33	1.93
32649267--32649324	29	2.0	29	93	0	98	46	25	1	25	1.62
32649737--32649767	12	2.6	12	94	0	53	29	16	19	35	1.93
32652896--32652958	25	2.5	24	72	7	63	61	0	11	26	1.29
32652930--32652972	16	2.4	18	85	11	54	60	2	13	23	1.45
32664916--32665039	58	2.1	58	92	0	203	34	28	10	26	1.89
32667972--32668238	49	5.6	47	89	4	390	32	9	29	27	1.89
32668357--32668435	37	2.1	37	90	0	122	24	18	31	25	1.98
32681883--32681909	14	1.9	14	100	0	54	29	14	7	48	1.71
32686331--32687921	132	12.1	131	93	3	2451	24	25	20	29	1.99
32690170--32690252	41	2.0	41	100	0	166	21	28	9	39	1.85
32695507--32695652	40	3.7	40	92	0	240	21	28	19	30	1.98
32702936--32703149	109	2.0	109	95	0	383	24	21	14	40	1.90
32704308--32704414	40	2.7	40	94	0	187	21	27	20	30	1.98
32720443--32720611	65	2.9	54	79	17	180	31	1	22	44	1.63
32720496--32720740	130	1.9	130	89	0	382	29	1	23	44	1.63
32720491--32720740	65	3.8	65	84	5	344	30	1	23	44	1.63
32724640--32724862	114	2.0	113	85	7	301	22	19	23	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32725217--32725265	18	2.5	21	80	9	59	61	10	2	26	1.39
32725855--32725881	7	3.9	7	100	0	54	11	0	44	44	1.39
32726331--32726812	230	2.1	231	91	0	786	28	18	19	32	1.96
32726332--32726883	230	2.4	229	87	2	667	28	18	19	33	1.96
32727176--32727219	19	2.3	19	84	0	61	31	43	2	22	1.66
32729240--32729352	37	2.9	39	73	10	124	46	7	3	41	1.50
32729259--32730090	57	14.3	57	78	10	851	45	9	5	38	1.60
32729346--32729467	37	3.3	37	87	0	172	49	11	4	34	1.61
32729404--32730090	115	6.0	115	97	1	1249	45	10	5	38	1.61
32729404--32730842	230	6.3	229	85	8	1774	45	10	5	39	1.61
32729747--32730833	361	2.9	361	85	9	1281	45	9	5	39	1.61
32730050--32730173	37	3.3	37	83	4	167	48	9	6	35	1.62
32729977--32730448	115	3.8	131	89	6	488	45	9	5	39	1.61
32730124--32730842	57	12.8	57	76	9	620	45	9	5	39	1.60
32730108--32730479	115	3.3	115	95	2	644	44	9	5	39	1.61
32730387--32730595	96	2.2	96	97	0	391	41	8	4	44	1.56
32730318--32730648	76	4.3	75	73	12	253	44	9	4	41	1.58
32730607--32730636	9	3.3	9	90	0	51	46	16	0	36	1.47
32730616--32730772	46	3.2	46	73	18	161	47	10	5	36	1.63
32730555--32730847	103	2.7	112	88	9	496	47	10	4	37	1.58
32730822--32731067	9	28.1	9	74	10	206	45	19	2	32	1.62
32730841--32731028	104	1.8	104	87	2	279	45	19	2	31	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32736536--32736606	21	3.4	21	82	0	88	32	16	45	5	1.71
32738107--32738141	14	2.4	15	90	4	54	71	2	0	25	1.00
32738145--32738238	30	3.1	30	84	6	120	28	22	3	45	1.67
32738134--32738272	60	2.4	59	79	4	156	33	21	2	42	1.68
32739504--32739601	17	5.6	17	78	9	90	25	11	13	50	1.74
32739502--32739601	35	2.9	35	79	4	105	27	11	13	49	1.75
32739579--32739668	39	2.3	37	80	12	99	36	4	8	50	1.54
32739597--32739681	40	2.2	38	83	8	100	35	7	8	49	1.60
32739717--32739756	21	1.9	21	94	0	71	35	12	10	42	1.76
32739833--32740037	17	11.8	17	73	9	137	30	14	11	43	1.81
32739944--32740051	34	3.2	34	80	5	112	30	12	12	44	1.79
32740079--32740176	17	5.8	16	69	14	54	25	10	13	51	1.72
32748392--32748567	69	2.5	71	83	5	200	30	14	22	32	1.93
32753298--32753584	18	16.4	17	70	12	145	33	14	10	41	1.80
32753298--32753570	35	7.8	36	71	9	161	33	14	10	41	1.80
32753477--32753570	34	2.7	35	80	6	104	29	12	12	44	1.80
32754658--32754712	16	3.4	16	89	0	83	36	7	29	27	1.84
32754828--32755145	159	2.0	159	100	0	636	41	6	7	44	1.60
32756927--32757295	26	14.2	26	86	0	452	37	20	16	26	1.93
32763602--32763667	28	2.3	28	94	5	114	10	6	56	27	1.57
32764655--32764885	26	8.9	26	87	1	304	36	18	16	27	1.93
32764655--32764896	52	4.7	52	86	2	335	37	19	16	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32764655--32764923	26	10.3	26	84	3	287	36	19	17	26	1.93
32765648--32765691	21	2.0	22	87	12	65	36	20	4	38	1.73
32766131--32766412	146	2.0	146	87	2	419	28	5	18	47	1.71
32767033--32767078	24	2.0	24	86	4	67	45	0	2	52	1.13
32791077--32791102	4	6.5	4	100	0	52	46	0	0	53	1.00
32800642--32801004	182	2.0	181	94	0	636	32	8	21	37	1.83
32801980--32802165	70	2.7	70	82	3	225	39	19	20	20	1.93
32804354--32804417	13	4.9	13	84	0	92	31	7	25	35	1.84
32806461--32806628	72	2.3	72	83	4	205	54	13	5	26	1.61
32807057--32807121	18	3.7	18	83	2	87	41	13	12	32	1.82
32809582--32809705	19	6.9	19	68	17	86	51	23	23	1	1.57
32809590--32809705	25	5.1	25	72	20	112	50	24	23	1	1.58
32813834--32813903	29	2.4	30	82	2	88	38	27	14	20	1.91
32821564--32821608	24	1.9	23	82	13	56	48	20	6	24	1.73
32822661--32822711	24	2.1	24	88	0	75	25	27	5	41	1.78
32824738--32824784	11	4.1	11	78	10	58	65	2	0	31	1.04
32825595--32825651	27	2.1	27	83	6	71	35	15	14	35	1.88
32827753--32827782	13	2.3	13	94	0	51	46	0	10	43	1.37
32829483--32829542	15	3.4	17	76	21	61	46	1	28	23	1.62
32829895--32829931	9	4.1	9	89	0	56	32	10	10	45	1.74
32833251--32833379	65	2.0	65	90	1	206	37	20	17	24	1.93
32833315--32834213	101	9.3	101	73	10	646	38	17	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32833665--32833936	88	3.1	87	77	3	271	40	15	13	30	1.87
32833665--32834096	88	4.8	87	73	9	256	40	15	14	29	1.87
32833931--32834117	88	2.1	88	84	0	239	39	17	16	27	1.91
32833564--32834096	276	1.9	277	81	1	647	39	16	15	29	1.88
32833776--32834279	189	2.7	188	80	1	517	40	15	14	28	1.87
32834251--32834334	42	2.0	42	100	0	168	40	9	19	30	1.83
32834349--32834631	101	2.8	101	87	1	397	39	19	16	25	1.91
32834553--32834886	87	3.8	87	77	7	275	38	16	14	30	1.88
32834571--32834886	88	3.6	84	76	9	251	38	14	14	31	1.87
32834995--32835284	101	2.9	100	81	2	321	37	17	15	29	1.91
32835366--32838008	101	27.0	101	70	14	1232	38	17	15	28	1.90
32835880--32836147	88	3.0	87	75	6	220	39	15	14	29	1.87
32836331--32836355	13	1.9	13	100	0	50	52	40	0	8	1.31
32836962--32837209	88	2.8	89	82	6	283	39	14	15	30	1.88
32836751--32837704	378	2.5	377	84	5	1194	39	16	15	28	1.89
32836653--32840302	478	7.6	476	74	12	1811	38	17	15	28	1.91
32836752--32842639	377	15.4	374	70	14	1663	38	17	15	28	1.90
32837910--32838184	88	3.1	87	81	6	281	39	15	14	30	1.88
32838084--32839365	101	13.0	101	78	7	1118	37	17	16	28	1.92
32834983--32845154	679	15.2	678	72	13	4774	38	17	15	28	1.90
32838601--32838858	88	2.9	88	81	6	292	38	15	16	29	1.90
32839300--32839542	87	2.8	85	81	5	272	38	16	15	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32836477--32841730	578	9.2	578	73	12	1843	38	17	15	28	1.90
32839267--32839542	88	3.1	88	79	5	285	37	17	15	28	1.91
32839445--32840102	101	6.7	100	73	10	451	39	18	14	27	1.90
32839875--32840040	87	1.9	87	81	4	201	42	17	14	25	1.87
32839946--32840130	101	1.8	100	81	3	228	39	16	17	26	1.91
32840035--32840217	87	2.1	88	83	1	224	37	18	17	26	1.93
32839756--32840501	188	3.9	184	76	7	516	39	17	15	27	1.90
32840124--32840617	101	4.9	101	75	6	376	39	19	14	26	1.91
32840686--32840955	101	2.7	98	80	5	290	40	15	17	26	1.89
32840900--32841245	87	4.0	87	77	7	299	41	14	16	27	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153