genome.fa.s18.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  4  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1032499--1032524	13	2.0	13	100	0	52	38	30	23	7	1.83
1034821--1034860	21	2.0	20	85	5	53	52	7	2	37	1.43
1037665--1038164	246	2.0	246	99	0	991	30	12	10	47	1.73
1050440--1050480	20	2.0	20	90	0	64	9	14	0	75	1.04
1054017--1054065	3	16.3	3	100	0	98	32	0	0	67	0.91
1056888--1056941	15	3.3	15	74	18	54	44	0	1	53	1.11
1056886--1056953	34	2.1	32	88	5	100	48	0	2	48	1.16
1058739--1058863	29	4.3	29	82	6	110	18	32	28	20	1.96
1060106--1060136	6	5.2	6	100	0	62	80	0	0	19	0.71
1069541--1069613	30	2.4	30	86	0	92	24	13	24	36	1.92
1073700--1073737	20	2.0	20	89	5	60	39	10	18	31	1.85
1076841--1076950	45	2.4	45	81	0	121	20	28	16	35	1.94
1076865--1076964	45	2.2	45	87	0	146	19	28	17	36	1.93
1076854--1077025	45	3.8	45	75	6	125	18	24	16	41	1.90
1098295--1098376	35	2.4	35	74	12	89	64	0	2	32	1.07
1102097--1102333	26	9.1	26	84	3	280	24	16	18	39	1.92
1102097--1102333	78	3.0	78	88	2	332	24	16	18	39	1.92
1104699--1105286	40	14.7	40	100	0	1176	30	20	27	22	1.98
1112939--1113058	26	4.6	26	85	4	152	25	15	20	38	1.92
1118072--1118249	27	6.6	27	83	3	205	26	15	28	29	1.96
1118073--1118228	82	1.9	81	88	3	233	26	15	28	29	1.96
1118069--1118249	82	2.2	81	83	2	229	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126135--1126312	27	6.6	27	83	3	205	26	15	28	29	1.96
1126136--1126291	82	1.9	81	88	3	233	26	15	28	29	1.96
1126132--1126312	82	2.2	81	83	2	229	27	15	27	29	1.96
1127663--1127809	56	2.6	54	82	8	170	25	28	18	27	1.98
1133875--1133909	18	1.9	18	88	11	54	34	8	17	40	1.80
1133884--1133917	17	1.9	18	88	5	52	38	5	14	41	1.70
1134348--1134397	26	1.9	26	83	0	64	34	18	24	24	1.96
1134599--1135015	26	16.0	26	79	8	429	27	16	17	38	1.91
1134599--1135015	78	5.4	77	83	7	502	27	16	17	38	1.91
1138405--1138548	40	3.6	40	83	1	173	18	30	15	35	1.92
1145081--1145109	14	2.1	14	100	0	58	27	20	6	44	1.77
1146632--1146657	3	8.7	3	100	0	52	0	65	0	34	0.93
1146876--1146915	20	2.0	20	100	0	80	45	20	20	15	1.86
1147717--1147789	32	2.3	31	88	2	101	60	4	2	32	1.30
1165563--1165603	17	2.4	17	84	8	57	24	21	7	46	1.77
1167240--1167423	98	1.9	99	83	3	246	51	8	10	29	1.66
1168489--1168540	24	2.2	24	100	0	104	44	7	9	38	1.66
1169746--1169788	16	2.7	16	88	0	68	55	6	25	11	1.60
1174024--1174227	27	7.6	27	85	0	246	28	12	28	30	1.93
1174024--1174233	81	2.6	81	86	1	287	29	12	28	30	1.93
1174031--1174255	54	4.2	54	86	1	254	29	12	26	31	1.93
1179967--1180016	19	2.6	19	83	3	64	54	6	4	36	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1180348--1180397	19	2.6	19	83	3	64	52	6	6	36	1.51
1179822--1180583	381	2.0	381	99	0	1515	49	6	7	36	1.58
1181785--1181818	17	1.9	17	88	5	50	20	11	38	29	1.88
1182233--1182694	44	10.0	45	69	14	210	25	21	19	33	1.97
1182214--1182637	142	3.0	142	93	0	715	25	20	19	33	1.97
1182677--1182783	44	2.4	44	73	11	101	23	23	18	34	1.96
1188827--1189188	49	7.6	47	91	3	544	32	7	30	29	1.85
1188827--1189188	96	3.8	96	90	3	561	32	7	30	29	1.85
1189307--1189384	37	2.1	37	90	0	120	25	19	30	24	1.98
1191464--1191509	24	1.9	24	86	8	67	30	41	4	23	1.74
1197150--1197198	20	2.5	20	83	3	64	55	6	4	34	1.44
1198317--1198341	11	2.3	11	100	0	50	68	0	16	16	1.22
1204981--1205047	34	2.0	34	96	0	125	25	20	14	38	1.91
1211723--1211761	18	2.1	19	85	9	53	43	15	0	41	1.46
1219492--1219552	31	2.0	31	100	0	122	32	9	14	42	1.79
1221444--1221524	32	2.5	32	81	0	90	38	22	7	32	1.82
1236371--1236410	21	1.9	21	84	0	53	12	12	30	45	1.79
1241708--1241750	21	2.0	22	86	4	61	55	2	0	41	1.12
1241760--1241811	22	2.2	22	83	10	59	36	1	7	53	1.41
1249300--1249343	22	2.0	21	83	12	54	40	0	0	59	0.98
1250829--1250871	18	2.3	18	84	4	50	55	0	4	39	1.20
1266519--1266563	25	1.9	25	86	13	69	35	0	8	55	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275583--1276209	316	2.0	316	93	0	1076	32	19	18	29	1.96
1276122--1276411	145	2.0	144	89	2	438	22	30	3	44	1.70
1277576--1277615	11	3.7	11	90	3	64	55	0	37	7	1.29
1277570--1277606	11	2.9	13	80	19	51	54	0	37	8	1.30
1280133--1280955	3	274.3	3	100	0	1646	0	33	0	66	0.92
1282436--1282477	22	1.9	22	85	0	57	54	7	0	38	1.28
1290616--1290682	34	2.0	34	93	0	116	32	31	11	23	1.91
1303011--1303056	16	2.7	17	86	6	58	47	13	2	36	1.54
1306213--1306310	51	2.0	49	95	2	169	28	31	10	28	1.89
1308924--1308958	17	2.1	17	100	0	70	25	17	5	51	1.67
1313556--1313628	34	2.1	34	87	0	101	31	4	30	34	1.77
1324898--1325105	28	7.6	27	94	2	326	31	28	13	26	1.94
1324898--1325105	55	3.8	55	93	1	344	31	28	13	26	1.94
1324898--1325130	83	2.8	83	91	2	360	31	29	13	25	1.94
1329339--1329370	16	2.0	16	93	0	55	25	15	0	59	1.36
1332514--1332595	42	2.0	42	82	4	103	30	23	14	31	1.94
1335383--1335414	16	2.0	16	93	0	55	25	15	0	59	1.36
1336038--1336068	16	1.9	16	93	0	53	38	9	9	41	1.71
1336513--1336700	94	2.0	94	97	0	358	31	19	12	36	1.89
1337013--1337228	41	5.5	40	74	11	151	23	27	16	32	1.96
1337070--1337132	33	1.9	33	86	0	90	25	30	9	34	1.88
1337039--1337177	74	1.9	74	83	3	181	24	28	15	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1346694--1346734	22	1.9	21	95	5	73	34	7	17	41	1.77
1346814--1347236	142	3.0	142	99	0	837	26	17	10	45	1.81
1349111--1349155	23	2.0	23	83	8	58	40	8	8	42	1.67
1373152--1373180	10	2.7	11	89	10	51	34	27	0	37	1.57
1377197--1377322	28	4.4	28	80	7	135	28	23	23	24	1.99
1377426--1377476	26	2.0	26	92	0	84	39	21	21	17	1.93
1377713--1378442	27	27.1	26	81	5	661	17	19	20	42	1.89
1377713--1378442	81	9.0	80	81	4	752	17	19	20	42	1.89
1380706--1380738	17	1.9	17	93	0	57	57	9	12	21	1.62
1392546--1392949	49	8.3	49	96	1	701	35	8	28	26	1.86
1412551--1412622	33	2.1	34	89	2	110	40	6	12	40	1.70
1430934--1431014	40	2.0	40	100	0	162	53	9	14	22	1.71
1434158--1434189	16	2.0	16	93	0	55	37	9	6	46	1.61
1442049--1442083	19	1.9	19	88	11	56	48	5	0	45	1.26
1442424--1442455	13	2.5	13	95	5	57	59	6	0	34	1.23
1443922--1444057	50	2.7	50	84	4	168	23	17	24	34	1.96
1444181--1448404	44	96.8	44	67	12	843	28	20	18	33	1.96
1444103--1444430	175	1.9	173	89	1	512	29	20	17	32	1.96
1444366--1445002	175	3.6	176	86	4	632	29	18	18	33	1.95
1444054--1445266	394	3.1	394	84	5	1363	29	19	18	33	1.95
1445035--1445569	175	3.1	175	95	1	932	28	20	18	32	1.96
1444075--1446139	569	3.6	569	94	0	3376	28	19	18	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1444181--1446577	394	6.1	395	79	7	1953	28	20	18	32	1.96
1444839--1445307	219	2.2	217	83	4	498	29	18	18	33	1.95
1445387--1445788	219	1.8	218	89	2	637	29	19	18	32	1.96
1445604--1446134	175	3.0	174	93	0	848	29	19	18	32	1.96
1445411--1445874	219	2.1	215	82	6	501	29	20	18	31	1.96
1445886--1446397	263	1.9	262	86	2	731	28	21	19	31	1.97
1446155--1446572	175	2.4	175	85	2	536	28	21	18	31	1.96
1445931--1447834	482	4.0	481	79	6	1848	28	20	17	33	1.96
1447208--1447566	85	4.2	85	100	0	718	30	21	16	31	1.95
1447378--1448144	307	2.5	307	83	5	930	28	20	18	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153