genome.fa.s18.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  110  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34466289--34466342	19	2.8	18	81	18	65	33	0	1	64	1.04
34466290--34466345	26	2.1	27	83	3	69	32	0	1	66	1.03
34468102--34468149	3	16.3	3	82	4	62	66	4	2	27	1.21
34482935--34482992	31	1.9	29	86	6	80	50	10	3	36	1.54
34482932--34482996	31	2.3	27	80	15	76	49	9	3	38	1.51
34484678--34484716	21	1.9	21	94	5	71	48	0	5	46	1.24
34484871--34484924	22	2.5	21	85	5	81	64	1	33	0	1.04
34492611--34492649	21	1.9	21	94	5	71	48	0	5	46	1.24
34492699--34492799	27	3.7	27	95	0	184	16	21	38	22	1.93
34492860--34492915	22	2.5	22	94	0	94	66	3	30	0	1.09
34496247--34496271	6	4.2	6	100	0	50	0	32	36	32	1.58
34497896--34497937	16	2.7	15	85	7	57	57	2	2	38	1.25
34498048--34498121	38	1.9	38	97	0	139	39	2	4	54	1.34
34498317--34498533	22	8.8	25	75	18	197	54	12	0	31	1.44
34498338--34498634	49	6.7	41	68	23	172	55	12	0	31	1.43
34498317--34498542	27	9.1	27	77	18	213	54	12	0	32	1.44
34498322--34498538	98	2.2	98	95	0	398	55	12	0	31	1.43
34498264--34498542	49	5.7	49	82	4	343	54	13	0	31	1.45
34506175--34506357	42	4.4	42	85	2	206	46	15	20	16	1.83
34506169--34506357	21	9.0	21	64	2	83	46	16	20	16	1.85
34514886--34514913	2	14.0	2	100	0	56	50	50	0	0	1.00
34520049--34520128	29	3.0	28	68	30	75	45	0	1	53	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34520075--34520126	22	2.3	23	83	9	72	48	0	0	51	1.00
34520190--34520229	17	2.4	17	95	0	71	62	5	0	32	1.17
34528232--34528325	34	3.1	30	71	21	88	53	1	2	43	1.19
34528351--34528386	18	2.0	18	100	0	72	38	0	0	61	0.96
34531623--34531674	20	2.6	20	81	0	59	53	5	0	40	1.25
34536579--34536632	24	2.3	24	83	3	74	25	14	22	37	1.93
34538049--34538204	32	4.9	32	82	0	177	32	8	16	42	1.78
34538035--34538215	32	5.7	32	76	3	132	30	8	16	44	1.77
34541271--34541312	20	2.2	19	86	4	57	40	0	7	52	1.29
34544685--34544730	16	2.7	17	80	16	51	21	2	2	73	1.04
34544891--34544935	23	2.0	23	90	0	72	46	2	8	42	1.47
34551336--34551377	21	2.0	20	90	4	66	21	35	14	26	1.91
34555508--34555671	43	3.8	43	76	7	154	25	15	26	33	1.95
34561478--34561520	18	2.4	18	92	0	68	2	58	0	39	1.11
34561969--34562023	25	2.2	25	96	0	101	21	18	18	41	1.90
34563662--34563701	20	2.0	20	90	0	62	27	27	22	22	1.99
34564030--34564069	20	2.0	20	85	0	53	50	12	10	27	1.72
34564018--34564084	34	1.9	35	90	3	109	46	13	8	31	1.74
34570936--34571033	23	4.3	23	93	2	171	32	26	20	20	1.97
34570936--34571033	45	2.2	46	92	3	171	32	26	20	20	1.97
34572221--34572251	9	3.4	9	95	0	53	25	9	25	38	1.86
34573617--34573655	3	13.0	3	100	0	78	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34574876--34574926	24	2.1	24	85	0	66	50	7	3	37	1.50
34576919--34576973	8	6.8	8	76	12	58	36	0	1	61	1.06
34577174--34577214	13	3.2	13	86	3	57	70	0	29	0	0.87
34577944--34578093	45	3.3	45	88	0	210	22	18	18	41	1.90
34578073--34578111	18	2.1	19	85	4	53	23	20	12	43	1.86
34589939--34589968	6	4.8	6	95	4	51	83	0	3	13	0.77
34596764--34596792	1	29.0	1	100	0	58	0	100	0	0	0.00
34602212--34602258	25	2.0	25	83	8	62	27	14	4	53	1.60
34602519--34602735	46	4.7	46	91	1	310	21	24	15	39	1.91
34608388--34608428	22	1.9	22	90	5	66	24	12	4	58	1.53
34608465--34608496	15	2.1	16	88	11	50	31	0	0	68	0.90
34613195--34613229	3	11.7	3	100	0	70	68	0	31	0	0.90
34614419--34614470	27	2.0	26	81	11	61	30	3	13	51	1.58
34625716--34625784	30	2.3	29	80	11	77	52	1	4	42	1.30
34633215--34633276	30	2.1	30	100	0	124	40	3	19	37	1.68
34633225--34633284	30	2.2	27	85	14	79	38	3	20	38	1.69
34640086--34640128	18	2.4	18	92	7	70	44	0	0	55	0.99
34641069--34641136	22	3.1	22	73	0	64	13	13	14	58	1.63
34642851--34642912	29	2.2	28	81	15	76	46	3	0	50	1.17
34646617--34646649	10	3.3	10	95	0	57	42	9	12	36	1.74
34646844--34647071	32	6.8	32	86	6	276	18	24	17	39	1.92
34646844--34647081	67	3.6	67	84	6	320	18	23	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34646843--34647071	102	2.3	100	90	2	370	18	24	17	39	1.91
34649883--34649927	20	2.1	22	84	12	58	13	11	8	66	1.44
34654534--34654707	32	5.2	33	84	8	217	17	22	17	41	1.89
34654534--34654704	67	2.6	67	94	0	288	18	22	17	41	1.90
34655307--34655397	17	5.3	18	70	27	58	53	3	3	39	1.33
34657952--34658008	21	2.7	21	91	8	89	0	15	15	68	1.22
34661812--34661898	10	9.2	9	71	21	54	60	5	1	32	1.27
34661855--34661898	19	2.3	19	84	7	54	65	4	0	29	1.12
34672911--34672986	29	2.6	29	74	0	89	25	36	21	17	1.94
34672911--34672996	29	3.0	28	71	6	73	25	37	20	16	1.93
34675720--34675759	16	2.5	16	100	0	80	30	22	27	20	1.98
34681018--34681056	17	2.3	17	86	8	53	51	2	0	46	1.14
34695927--34696162	41	5.7	41	79	2	204	24	20	26	28	1.99
34696811--34696853	21	2.0	21	86	0	59	23	0	39	37	1.55
34697932--34697996	22	3.0	22	77	8	71	24	46	3	26	1.67
34697940--34697996	21	2.7	21	78	10	62	28	42	1	28	1.66
34706440--34706469	5	6.2	5	96	3	53	83	0	16	0	0.65
34707289--34707442	41	3.7	42	77	11	131	23	16	28	31	1.96
34707603--34707634	16	1.9	17	93	6	57	40	0	21	37	1.54
34710630--34710661	16	1.9	17	93	6	57	40	0	21	37	1.54
34712608--34712661	23	2.3	23	96	0	99	29	5	18	46	1.72
34715849--34715884	15	2.4	15	100	0	72	33	33	5	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34717526--34717661	28	4.9	27	83	5	139	19	17	9	52	1.71
34724867--34725060	97	2.0	97	98	0	379	34	18	22	25	1.96
34725492--34725630	27	5.2	27	85	5	192	44	22	16	16	1.86
34727430--34727471	20	2.0	22	86	9	61	69	0	2	28	1.01
34731842--34731977	59	2.3	57	84	3	173	45	0	2	51	1.16
34732099--34732150	16	3.2	16	83	0	68	30	25	3	40	1.73
34732335--34732406	35	2.1	35	97	0	135	30	11	20	37	1.88
34734299--34734681	193	2.0	191	81	8	445	41	11	8	38	1.72
34735524--34735594	36	2.0	36	88	0	106	32	9	16	40	1.82
34735819--34735914	48	2.0	48	85	0	129	20	17	19	41	1.90
34749679--34749749	36	2.0	36	91	0	115	30	9	18	40	1.83
34749976--34750069	48	2.0	48	89	0	143	19	19	22	39	1.93
34751612--34751727	62	1.9	61	84	5	155	50	6	2	40	1.40
34755434--34755521	44	2.0	44	97	0	167	31	23	9	35	1.86
34759350--34759397	25	1.9	25	87	8	71	35	6	14	43	1.71
34759895--34759935	19	2.2	19	86	0	55	24	24	17	34	1.96
34763577--34763879	40	7.6	40	89	2	396	27	27	20	24	1.99
34771568--34771790	40	5.6	40	85	3	236	26	27	21	24	1.99
34771722--34771799	40	1.9	41	82	10	97	26	28	21	23	1.99
34774302--34774328	4	6.8	4	100	0	54	25	0	0	74	0.83
34776025--34776068	24	1.9	24	90	9	74	36	0	2	61	1.09
34776135--34776261	59	2.1	60	94	1	220	43	8	5	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34776250--34776291	16	2.6	16	92	0	66	42	7	2	47	1.43
34777127--34777382	126	2.0	129	93	4	439	34	24	10	30	1.89
34783072--34783109	17	2.2	18	85	4	51	52	2	0	44	1.14
34791251--34791290	10	3.8	10	81	12	53	55	2	2	40	1.27
34793161--34793243	28	2.7	29	77	19	80	27	24	24	24	2.00
34793188--34793272	28	3.0	28	87	0	107	34	23	21	21	1.97
34793356--34793435	26	3.1	26	87	0	106	42	23	18	15	1.88
34793631--34793931	27	11.1	27	88	2	370	22	17	17	41	1.90
34815350--34815871	278	1.9	272	88	3	794	32	19	17	30	1.95
34818065--34818681	26	23.6	26	77	5	490	38	21	17	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153