genome.fa.s18.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  28  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9799343--9799390	21	2.2	21	85	3	69	16	10	6	66	1.41
9799385--9799439	22	2.5	22	76	2	58	20	23	3	52	1.62
9805843--9805877	17	2.1	17	89	10	54	60	0	0	40	0.97
9806611--9806699	41	2.2	40	86	8	117	30	23	19	26	1.98
9813260--9813331	5	14.8	5	74	21	64	38	1	4	55	1.28
9813289--9813331	19	2.3	19	92	8	70	41	2	0	55	1.12
9813341--9813374	17	2.0	17	94	0	59	79	0	17	2	0.86
9813341--9813374	9	3.9	9	84	7	52	79	0	17	2	0.86
9813944--9814001	30	1.9	30	89	0	89	41	3	24	31	1.71
9814341--9814426	46	1.9	44	90	4	136	33	13	23	29	1.93
9814343--9814467	44	2.8	45	81	4	135	34	14	23	28	1.94
9819212--9819269	30	1.9	30	89	0	89	41	3	24	31	1.71
9819481--9819512	13	2.5	13	94	0	55	31	0	12	56	1.37
9819607--9819791	50	3.7	50	99	0	361	26	23	32	16	1.96
9831665--9831710	24	1.9	24	90	0	74	36	4	8	50	1.53
9832217--9832278	30	2.1	30	81	0	70	35	24	9	30	1.87
9841674--9841724	23	2.2	23	96	0	93	37	0	13	49	1.43
9841683--9841724	13	3.5	13	75	18	54	38	0	11	50	1.40
9844183--9844233	24	2.1	24	88	0	75	35	17	29	17	1.93
9844196--9844259	24	2.7	25	81	13	73	39	17	28	15	1.90
9844250--9844315	26	2.6	25	80	7	69	36	22	22	18	1.95
9848247--9848291	20	2.2	20	88	7	65	28	0	4	66	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9849390--9849433	3	15.0	3	90	4	72	63	0	36	0	0.95
9859538--9859566	2	14.5	2	100	0	58	0	51	0	48	1.00
9884192--9884234	18	2.4	18	88	7	61	53	0	0	46	1.00
9891600--9891629	3	10.0	3	100	0	60	0	33	0	66	0.92
9901908--9901950	9	4.8	9	94	0	68	39	27	9	23	1.85
9905084--9905153	27	2.5	26	80	11	77	51	5	8	34	1.56
9912237--9912266	13	2.2	14	94	5	53	0	20	0	80	0.72
9916002--9916127	41	3.1	41	87	6	186	37	2	0	60	1.10
9916009--9916112	11	10.2	11	67	27	61	40	2	0	56	1.14
9916077--9916130	15	3.5	15	73	16	56	40	0	0	59	0.98
9919003--9919046	12	3.7	12	84	0	61	40	22	34	2	1.67
9919003--9919044	18	2.3	18	83	0	66	42	21	33	2	1.66
9920992--9921021	6	5.0	6	100	0	60	33	16	50	0	1.46
9923027--9923082	28	2.0	28	82	3	69	19	21	16	42	1.89
9925291--9927510	725	3.0	725	92	3	3484	46	12	14	25	1.81
9926202--9927740	769	2.0	769	100	0	3078	45	14	16	24	1.84
9932195--9932543	89	3.9	89	71	15	288	32	8	10	48	1.68
9932571--9932898	91	3.5	89	74	14	225	30	9	11	48	1.71
9933010--9933777	89	8.6	87	74	12	369	27	10	13	47	1.76
9933105--9933424	176	1.8	177	83	7	427	29	12	11	46	1.77
9934768--9934808	21	2.0	21	85	9	57	41	2	0	56	1.13
9935601--9935632	16	2.0	16	100	0	64	0	18	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9938311--9938463	75	2.0	75	94	0	270	35	16	19	28	1.93
9945956--9946288	102	3.3	102	93	0	558	30	28	20	20	1.98
9946624--9946681	30	1.9	30	82	0	71	29	24	6	39	1.81
9953124--9953424	102	3.0	102	94	0	530	31	27	20	20	1.98
9953833--9953866	11	2.8	12	91	8	52	32	8	14	44	1.76
9956507--9956558	24	2.2	24	82	6	61	50	3	3	42	1.39
9971395--9971461	23	2.9	23	86	6	100	23	20	23	31	1.98
9971937--9971994	16	3.6	16	85	0	80	37	6	27	27	1.82
9971974--9972066	44	2.1	44	92	6	152	33	4	25	36	1.76
9972225--9972278	19	2.8	19	100	0	108	62	0	0	37	0.95
9972174--9972315	75	1.9	76	81	8	173	52	3	0	43	1.23
9973528--9973603	38	2.0	38	89	2	118	47	19	17	15	1.83
9976324--9976459	49	2.8	49	89	2	211	27	13	25	33	1.94
9980175--9980305	41	3.2	41	85	0	145	29	19	24	27	1.98
9982965--9983012	25	1.9	25	87	8	71	37	0	2	60	1.09
9983109--9983136	9	3.1	9	100	0	56	57	10	0	32	1.33
9983079--9983220	68	2.1	66	93	2	239	44	9	4	41	1.58
9987311--9987341	9	3.3	9	91	8	53	0	12	0	87	0.55
10009659--10009797	68	2.0	69	90	1	217	46	10	17	24	1.80
10011947--10011975	15	1.9	15	100	0	58	48	6	3	41	1.47
10038495--10038870	46	8.3	46	83	10	404	34	14	22	28	1.94
10038429--10038697	98	2.7	98	92	0	457	34	14	22	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10038661--10038733	36	2.0	36	94	0	128	36	13	20	28	1.91
10038615--10038868	82	3.0	82	85	9	334	33	15	22	28	1.94
10045331--10045630	46	6.6	46	93	1	498	32	15	21	30	1.95
10046770--10046988	46	4.7	46	85	8	280	29	23	13	33	1.93
10054545--10054570	5	5.2	5	100	0	52	61	0	0	38	0.96
10058087--10058141	15	3.8	15	80	2	60	3	21	1	72	1.09
10071228--10071258	16	1.9	16	93	0	53	54	0	3	41	1.16
10073381--10073484	30	3.3	30	87	5	145	31	3	15	49	1.63
10074860--10074891	17	1.9	17	93	6	57	53	0	9	37	1.34
10080136--10080170	16	2.1	17	94	5	63	42	20	11	25	1.85
10081042--10081085	11	4.0	11	82	8	54	25	31	0	43	1.55
10083188--10083234	21	2.2	21	77	7	51	29	40	23	6	1.79
10086606--10087020	126	3.3	126	89	1	652	25	20	20	33	1.97
10093667--10093710	16	2.9	15	83	6	54	25	9	0	65	1.21
10095064--10095094	9	3.4	9	90	0	53	25	12	22	38	1.90
10095149--10095185	9	4.1	9	89	0	56	48	13	8	29	1.71
10098157--10098188	17	1.9	17	93	6	57	56	0	3	40	1.15
10098260--10098332	38	1.9	38	83	10	96	50	2	2	43	1.30
10100478--10100507	15	2.0	15	93	0	51	10	6	10	73	1.25
10103869--10103972	49	2.1	50	90	1	165	38	15	18	27	1.91
10111258--10111402	41	3.5	40	91	1	227	26	21	29	22	1.99
10121007--10121077	34	2.1	33	85	12	92	47	1	1	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10121144--10121182	17	2.4	17	91	4	62	48	7	0	43	1.31
10121683--10121750	31	2.2	32	86	5	95	52	10	1	35	1.44
10125478--10125627	79	1.9	77	91	2	246	40	12	22	24	1.88
10125725--10125782	22	2.6	22	81	7	64	41	17	5	36	1.72
10126448--10126583	44	3.1	44	65	10	123	23	24	24	27	2.00
10126331--10126612	89	3.2	89	86	1	368	28	22	22	26	1.99
10126868--10127031	42	3.9	42	80	6	170	31	22	17	29	1.96
10126878--10127031	44	3.6	42	81	6	159	32	22	16	28	1.96
10127141--10127595	44	10.2	44	77	4	360	28	23	18	30	1.97
10127165--10127592	178	2.4	178	92	0	687	28	23	18	29	1.98
10127141--10127594	134	3.4	133	76	3	439	28	23	18	30	1.98
10127872--10127927	24	2.3	24	90	0	85	26	26	14	32	1.95
10134436--10134680	122	2.0	121	95	2	438	53	14	8	24	1.68
10134745--10134894	79	1.9	77	91	2	246	40	12	22	24	1.88
10134875--10134974	48	2.1	48	98	0	191	31	16	21	32	1.95
10135040--10135097	22	2.6	22	81	7	64	41	17	5	36	1.72
10135763--10135898	44	3.1	44	65	10	123	23	24	24	27	2.00
10135646--10135927	89	3.2	89	86	1	368	28	22	22	26	1.99
10136183--10136346	42	3.9	42	80	6	170	31	22	17	29	1.96
10136193--10136346	44	3.6	42	81	6	159	32	22	16	28	1.96
10136456--10136910	44	10.2	44	77	4	360	28	23	18	30	1.97
10136480--10136907	178	2.4	178	92	0	687	28	23	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10136456--10136909	134	3.4	133	76	3	439	28	23	18	30	1.98
10137187--10137242	24	2.3	24	90	0	85	26	26	14	32	1.95
10143868--10143912	22	2.0	22	86	4	63	37	17	6	37	1.76
10148340--10148415	20	3.7	20	72	11	64	40	6	3	48	1.48
10148335--10148415	42	1.9	42	85	5	110	39	7	4	48	1.53
10148397--10148682	40	7.1	40	80	8	287	37	4	4	53	1.40
10148397--10148673	67	4.1	67	99	0	545	37	4	3	53	1.39
10151336--10151394	30	2.0	30	93	0	100	37	10	20	32	1.86
10160643--10160743	50	2.0	50	94	0	175	43	6	23	25	1.79
10160769--10160865	50	1.9	50	93	0	167	41	7	22	28	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153