genome.fa.s18.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  36  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12334341--12334624	120	2.4	120	90	2	446	48	4	1	44	1.34
12337322--12337352	16	1.9	16	93	0	53	80	3	0	16	0.83
12337352--12337459	29	3.8	29	81	2	112	33	20	3	42	1.70
12337401--12337476	29	2.6	29	81	8	84	34	17	2	46	1.62
12337711--12337756	22	2.1	22	84	8	58	63	0	36	0	0.95
12337821--12337852	15	2.1	15	94	0	55	84	0	15	0	0.63
12337824--12337860	18	2.0	18	89	5	56	86	0	10	2	0.67
12337923--12337958	6	6.5	6	87	12	51	88	11	0	0	0.50
12337923--12337958	17	2.2	17	90	9	58	88	11	0	0	0.50
12338118--12338169	22	2.5	21	82	11	63	76	0	23	0	0.78
12338119--12338176	31	2.0	28	83	10	71	77	0	22	0	0.77
12338122--12338176	29	1.9	28	85	10	76	78	0	21	0	0.76
12338123--12338182	7	8.1	7	73	15	50	78	0	21	0	0.75
12338121--12338173	9	5.7	9	73	8	52	79	0	20	0	0.74
12338331--12338374	16	2.8	16	86	3	63	29	2	0	68	1.02
12338499--12338531	16	2.1	16	88	5	50	27	15	6	51	1.66
12340904--12340943	4	10.0	4	88	0	62	27	20	0	52	1.46
12344602--12344632	10	3.2	10	95	4	55	83	16	0	0	0.64
12345506--12346175	81	8.3	81	95	2	1129	26	17	19	36	1.94
12346323--12346353	8	3.9	8	95	0	53	77	6	0	16	0.97
12346353--12346418	29	2.3	29	91	0	114	30	19	6	43	1.75
12346353--12346447	29	3.3	29	84	8	88	33	20	4	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12346821--12346893	3	27.0	3	83	10	72	76	0	23	0	0.78
12346849--12346897	7	7.3	7	90	9	84	85	0	14	0	0.59
12346843--12346897	20	2.8	20	97	0	101	83	0	16	0	0.64
12346972--12347006	16	2.3	16	90	9	56	85	14	0	0	0.59
12347171--12347222	22	2.5	21	82	11	63	76	0	23	0	0.78
12347386--12347428	16	2.8	16	82	3	52	30	4	0	65	1.13
12347555--12347587	16	2.1	16	88	5	50	24	15	9	51	1.72
12347734--12347818	32	2.6	33	80	9	95	31	9	9	49	1.67
12347770--12347819	15	3.2	15	78	15	57	36	8	10	46	1.67
12349108--12349165	11	5.1	11	74	15	55	48	0	0	51	1.00
12349127--12349159	17	1.9	17	93	0	57	39	0	0	60	0.97
12349304--12349401	40	2.4	41	81	6	103	21	26	28	23	1.99
12354871--12354939	35	2.0	35	94	5	122	43	13	17	26	1.85
12354968--12355014	24	2.0	24	86	0	67	40	4	6	48	1.48
12361160--12361298	25	5.6	25	80	4	138	21	28	18	30	1.97
12368013--12368193	41	4.4	41	86	2	256	24	17	23	34	1.95
12368013--12368193	82	2.2	82	88	3	283	24	17	23	34	1.95
12368526--12368593	34	2.0	34	97	0	127	38	2	10	48	1.52
12368528--12368609	34	2.4	34	87	4	110	37	2	14	45	1.58
12368627--12368700	35	2.1	35	82	0	85	36	8	16	39	1.78
12368683--12368834	71	2.1	70	86	4	207	32	9	15	42	1.79
12373748--12373853	41	2.6	41	92	0	176	22	21	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12374949--12375061	25	4.6	25	77	1	93	20	27	19	32	1.97
12376172--12376263	43	2.1	43	91	0	157	16	29	30	23	1.96
12377507--12377545	16	2.4	16	83	8	53	53	2	5	38	1.37
12381415--12381446	14	2.3	15	89	10	50	9	6	3	81	0.97
12384763--12384796	17	2.1	17	89	10	54	35	32	0	32	1.58
12390612--12390669	21	2.8	20	71	7	53	65	3	1	29	1.19
12392813--12392876	32	2.0	32	100	0	128	21	12	15	50	1.77
12403116--12403563	109	4.1	109	94	1	785	33	16	17	32	1.93
12404156--12404185	3	10.0	3	100	0	60	66	0	0	33	0.92
12406314--12406361	23	2.1	23	100	0	96	33	14	16	35	1.89
12409701--12409751	19	2.6	19	84	9	59	49	37	0	13	1.43
12418360--12418411	22	2.5	20	80	14	61	23	5	0	71	1.07
12419592--12419626	17	2.1	17	89	5	54	17	0	17	65	1.27
12420963--12421029	11	6.5	11	73	13	61	64	0	0	35	0.94
12420963--12421022	30	2.1	28	90	6	93	65	0	0	35	0.93
12420979--12421040	21	2.7	24	82	17	94	64	0	0	35	0.94
12420983--12421035	21	2.5	21	100	0	106	64	0	0	35	0.94
12421558--12421599	17	2.5	17	81	11	50	38	0	4	57	1.20
12421701--12421730	16	1.9	16	93	6	53	30	0	0	70	0.88
12423784--12423823	20	2.0	20	85	9	55	42	5	5	47	1.47
12437480--12437532	23	2.4	22	76	20	56	9	18	1	69	1.25
12441243--12441292	26	1.9	26	84	8	66	56	4	0	40	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12441521--12441553	17	1.9	17	88	11	50	57	0	0	42	0.98
12459504--12459544	18	2.3	19	83	8	59	48	0	4	46	1.23
12466086--12466137	26	2.0	26	100	0	104	53	15	19	11	1.71
12469831--12469880	9	5.6	9	87	0	64	28	10	22	40	1.86
12469831--12469880	18	2.8	18	87	0	73	28	10	22	40	1.86
12469829--12469880	27	1.9	27	92	7	88	26	9	23	40	1.85
12473556--12473580	9	2.8	9	100	0	50	76	0	0	24	0.80
12477126--12477678	271	2.0	271	93	0	953	25	14	15	45	1.83
12481395--12481432	12	3.0	13	78	21	53	31	2	0	65	1.06
12485989--12486069	33	2.7	30	76	16	78	49	1	1	48	1.17
12493855--12493926	23	3.2	23	71	23	62	54	2	2	40	1.29
12496136--12496175	21	1.9	21	85	10	55	60	5	12	22	1.52
12498644--12499214	112	5.2	110	84	8	724	42	14	17	25	1.87
12498758--12499164	216	1.9	216	94	2	728	43	15	17	24	1.87
12498729--12499214	216	2.2	216	83	8	727	44	14	17	23	1.85
12501116--12501190	19	3.9	19	89	0	105	40	5	14	40	1.69
12501115--12501197	38	2.2	37	87	6	123	40	4	15	38	1.69
12501133--12501213	19	3.9	22	79	12	66	38	4	16	40	1.70
12501179--12501223	23	2.0	23	82	4	56	35	2	15	46	1.58
12501397--12501441	23	2.0	23	81	0	54	22	0	15	62	1.33
12501666--12501697	3	10.7	3	100	0	64	34	0	0	65	0.93
12504548--12504625	15	5.2	15	67	11	61	43	7	21	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12504542--12504635	30	3.1	30	89	6	145	42	6	24	26	1.78
12509211--12509288	15	5.2	15	67	11	61	44	7	21	25	1.79
12509207--12509288	30	2.7	30	94	0	137	46	7	21	24	1.77
12510539--12510571	15	2.1	17	88	11	52	30	6	0	63	1.18
12513106--12513163	24	2.3	24	85	5	71	43	3	6	46	1.47
12519086--12519119	16	2.0	17	88	11	52	38	0	0	61	0.96
12526652--12526703	16	3.2	16	94	0	86	28	0	36	34	1.58
12526684--12526778	45	2.1	44	88	1	136	34	5	27	32	1.79
12526940--12526974	18	2.0	17	88	5	52	54	0	0	45	0.99
12526898--12526970	27	2.7	27	76	8	76	52	2	0	45	1.15
12526859--12527130	144	1.9	147	94	3	487	46	3	2	47	1.34
12527084--12527118	18	2.0	17	88	5	52	54	0	0	45	0.99
12527167--12527212	16	2.9	16	78	12	51	52	2	0	45	1.13
12529296--12529330	14	2.4	14	95	4	61	65	0	25	8	1.21
12529306--12529350	19	2.5	18	82	17	58	66	0	26	6	1.16
12533467--12533589	57	2.1	58	89	1	185	27	15	6	50	1.68
12544771--12544975	105	2.0	105	96	0	374	29	22	29	18	1.98
12546127--12546216	30	3.0	30	91	0	135	40	20	13	26	1.89
12547344--12547410	34	1.9	35	90	3	109	46	10	8	34	1.70
12554485--12554551	33	2.0	33	88	5	100	28	14	7	49	1.71
12554646--12554695	23	2.0	25	81	11	59	36	2	0	62	1.07
12560698--12560735	18	2.2	17	86	9	51	39	0	5	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12560695--12560737	17	2.5	17	85	10	61	37	0	4	58	1.19
12560720--12560757	20	2.0	20	89	5	60	28	2	10	57	1.45
12560722--12560766	20	2.3	19	81	7	54	33	2	11	53	1.49
12565687--12565730	17	2.7	16	86	10	54	43	4	0	52	1.22
12567783--12567843	4	15.2	4	100	0	122	24	0	24	50	1.49
12569457--12569551	4	23.8	4	89	4	147	23	4	25	47	1.69
12570113--12570153	13	3.1	14	83	13	52	75	2	0	21	0.92
12570339--12570418	40	2.0	40	95	4	144	47	15	10	27	1.77
12571072--12571105	17	2.1	17	88	5	52	26	14	11	47	1.79
12575588--12575633	23	2.0	23	82	0	56	69	4	2	23	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153