genome.fa.s18.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  100  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31526394--31526427	3	11.3	3	100	0	68	64	0	0	35	0.94
31526815--31526860	19	2.5	18	82	6	56	45	6	2	45	1.41
31527902--31527953	26	1.9	28	88	7	81	65	0	5	28	1.16
31529790--31529846	23	2.5	24	82	8	82	33	0	7	59	1.24
31533388--31533536	40	3.7	39	81	5	156	39	20	18	21	1.92
31535536--31535591	25	2.2	26	87	9	89	50	0	1	48	1.11
31536506--31536618	41	2.9	38	73	9	102	25	14	25	34	1.94
31541892--31541934	15	3.2	15	69	30	51	46	0	0	53	1.00
31541891--31541938	25	2.0	24	95	4	87	50	0	0	50	1.00
31541952--31542043	27	3.3	27	69	19	73	68	5	23	2	1.22
31546425--31546481	24	2.4	24	96	0	105	19	5	28	47	1.71
31561247--31561282	17	2.1	18	94	5	65	13	38	30	16	1.88
31574000--31574033	16	2.1	17	88	5	52	17	11	14	55	1.68
31578145--31578211	29	2.3	29	86	0	89	22	1	25	50	1.57
31578152--31578197	22	2.1	22	92	8	76	26	2	19	52	1.58
31578339--31578385	22	2.1	22	84	7	60	36	2	27	34	1.69
31578334--31578384	15	3.4	15	81	13	61	33	1	31	33	1.69
31578434--31578479	23	2.0	23	91	0	74	65	2	6	26	1.28
31578600--31579058	115	4.0	115	81	7	473	24	14	20	41	1.89
31578605--31579058	229	2.0	234	82	6	559	24	14	20	40	1.89
31579173--31579200	14	2.0	14	100	0	56	21	28	0	50	1.49
31580728--31580761	13	2.5	13	90	4	50	67	0	2	29	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31580958--31580983	12	2.2	12	100	0	52	38	7	7	46	1.61
31580986--31581043	12	5.2	12	76	16	54	53	12	0	34	1.38
31580998--31582138	9	130.4	9	73	14	797	46	19	1	33	1.58
31581114--31581194	41	2.0	41	92	0	135	50	22	1	25	1.56
31581085--31582072	43	23.2	41	72	17	324	46	19	1	32	1.57
31581227--31581319	29	3.1	29	70	11	89	52	13	3	30	1.57
31581381--31582025	113	5.6	113	96	3	1182	45	19	0	33	1.56
31581721--31582030	122	2.6	120	91	5	517	46	19	0	33	1.55
31581313--31582145	226	3.6	230	88	7	1133	45	19	1	33	1.57
31585040--31585090	21	2.5	20	81	9	57	33	13	45	7	1.73
31585521--31585732	85	2.5	85	83	3	259	26	23	18	31	1.97
31585521--31585732	42	5.0	42	85	3	255	26	23	18	31	1.97
31595037--31595063	12	2.2	12	100	0	54	40	11	29	18	1.85
31596331--31596364	17	1.9	17	88	5	50	17	26	38	17	1.92
31601554--31602246	346	2.0	353	84	7	933	35	12	18	33	1.89
31633351--31633380	6	4.8	6	95	4	51	33	0	0	66	0.92
31641237--31641320	43	2.0	43	92	0	141	26	28	16	28	1.97
31641239--31641333	43	2.2	43	86	3	129	27	28	20	24	1.99
31643302--31643508	44	4.8	44	77	9	158	29	13	23	32	1.93
31643355--31643519	42	3.9	43	76	11	162	29	12	24	33	1.92
31644027--31644064	16	2.4	16	86	8	51	31	0	15	52	1.43
31647848--31647904	26	2.2	26	84	9	71	42	29	15	12	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31650653--31650761	27	4.1	26	84	3	137	44	20	16	19	1.87
31650657--31650776	27	4.6	26	80	9	127	41	20	16	21	1.90
31650656--31650758	53	1.9	53	88	0	152	44	19	15	20	1.86
31654065--31654113	4	12.2	4	100	0	98	24	0	0	75	0.80
31654604--31654643	21	1.9	21	85	10	55	35	7	0	57	1.27
31654926--31655018	44	2.1	43	82	2	105	51	2	6	39	1.40
31654991--31655042	15	3.1	17	78	21	56	61	0	0	38	0.96
31655010--31655042	12	2.6	13	90	4	50	63	0	0	36	0.95
31663525--31663576	21	2.5	21	84	6	61	25	3	3	67	1.25
31663525--31663590	20	3.2	21	81	8	66	28	3	3	65	1.23
31669317--31669440	42	3.0	42	84	4	153	28	16	25	29	1.96
31672366--31672399	2	17.0	2	93	0	59	50	47	0	2	1.16
31674895--31674952	11	5.2	11	87	2	80	22	32	1	43	1.64
31674895--31674970	22	3.4	23	84	14	97	25	31	1	42	1.63
31674894--31674968	33	2.2	33	84	9	98	24	32	1	42	1.63
31674894--31674970	11	6.9	11	74	21	72	24	31	1	42	1.63
31676079--31676104	7	3.7	7	100	0	52	26	0	15	57	1.38
31677250--31677332	25	3.3	25	91	0	121	38	1	15	44	1.55
31677206--31677376	95	1.8	94	83	5	231	39	1	13	46	1.51
31680554--31680925	124	3.0	124	88	3	586	30	21	18	29	1.97
31685084--31685136	7	7.6	7	97	0	88	22	0	0	77	0.77
31685144--31685201	26	2.4	26	86	11	79	36	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31685520--31685608	31	2.8	31	79	17	101	26	1	2	69	1.07
31686433--31686477	21	2.2	21	84	7	58	46	22	22	8	1.79
31686448--31686600	42	3.6	42	81	0	180	47	17	18	16	1.83
31686448--31686600	21	7.3	21	74	0	108	47	17	18	16	1.83
31688203--31688249	19	2.5	19	96	3	87	57	0	4	38	1.18
31697867--31697908	21	2.0	21	81	9	50	64	4	0	30	1.14
31699462--31699505	11	3.7	11	80	16	52	54	2	2	40	1.25
31702861--31703016	81	1.9	79	89	5	242	43	10	16	28	1.82
31712884--31712974	45	2.0	45	97	0	173	41	10	13	34	1.79
31712884--31712956	24	3.2	24	62	31	59	38	10	13	36	1.80
31713477--31713512	16	2.2	16	90	0	54	27	27	2	41	1.70
31713889--31713919	9	3.4	9	90	0	53	25	12	22	38	1.90
31713975--31714008	9	3.8	9	92	0	50	44	14	14	26	1.84
31713972--31714008	18	2.1	18	94	0	65	45	13	13	27	1.81
31714222--31714281	30	2.0	31	83	3	77	18	41	0	40	1.50
31716041--31716080	21	1.9	21	85	10	55	27	2	12	57	1.48
31717569--31717601	12	2.8	12	100	0	66	33	6	0	60	1.21
31717717--31717784	27	2.7	24	77	9	64	38	7	1	52	1.38
31717858--31717910	8	6.4	8	75	16	54	35	3	1	58	1.27
31717858--31717934	27	2.9	26	83	9	77	36	6	1	55	1.34
31717692--31717966	148	1.9	143	89	6	426	33	6	3	56	1.41
31719765--31719795	16	1.9	16	93	0	53	25	19	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31724489--31725023	41	12.7	40	73	10	354	29	21	21	28	1.98
31724498--31725027	83	6.3	83	80	7	559	28	20	22	28	1.99
31724487--31724895	42	9.7	43	70	15	255	30	21	21	27	1.98
31724581--31724941	127	2.8	127	94	0	625	29	21	22	27	1.99
31726298--31726346	3	16.0	3	91	4	80	32	2	0	65	1.04
31726460--31726561	27	3.7	26	72	18	73	36	5	2	54	1.40
31726613--31726680	27	2.6	24	84	15	75	35	8	1	54	1.41
31726410--31726724	158	2.0	154	90	5	490	35	7	2	54	1.40
31726645--31726719	30	2.6	28	75	10	57	37	10	1	50	1.46
31726465--31726793	158	2.1	157	82	5	396	36	9	2	52	1.45
31726448--31726819	158	2.4	155	80	9	375	35	9	2	52	1.45
31726851--31726875	2	12.5	2	100	0	50	48	0	0	52	1.00
31730897--31730935	17	2.3	17	95	0	69	38	0	12	48	1.42
31738241--31738268	7	4.0	7	100	0	56	42	0	0	57	0.99
31739627--31739773	76	1.9	76	81	8	174	29	22	15	31	1.95
31750522--31750755	76	3.1	75	74	2	216	23	20	21	34	1.97
31762286--31762320	17	2.1	17	88	0	52	20	28	37	14	1.91
31765783--31765875	46	2.0	46	100	0	186	34	21	10	33	1.88
31765921--31766038	10	12.7	9	76	14	107	66	5	0	27	1.15
31765921--31766029	18	5.9	17	76	14	92	66	6	0	27	1.16
31765940--31766040	28	3.6	27	84	9	107	65	4	0	29	1.14
31765921--31766038	38	3.2	38	78	17	124	66	5	0	27	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31766751--31766802	20	2.7	19	84	3	68	25	0	15	59	1.36
31766752--31766795	10	4.4	10	80	11	54	22	0	13	63	1.29
31766833--31766877	19	2.2	20	88	7	65	31	2	6	60	1.35
31766830--31766877	21	2.4	21	86	6	73	31	2	6	60	1.33
31767002--31767142	60	2.4	57	81	9	160	34	8	17	40	1.79
31767580--31767615	8	4.6	8	96	3	65	0	0	8	91	0.41
31769189--31769243	26	2.1	26	82	0	65	41	12	20	25	1.87
31769472--31769511	17	2.3	18	91	4	64	45	0	0	55	0.99
31769501--31769555	19	2.9	19	86	5	76	36	0	5	58	1.21
31770943--31770993	19	2.8	19	75	16	54	23	1	3	70	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153