genome.fa.s18.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  112  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35130630--35130697	27	2.5	28	84	11	81	2	20	0	76	0.92
35130622--35130691	34	2.1	33	82	12	81	4	15	0	80	0.87
35131251--35131293	19	2.2	20	91	4	70	32	4	20	41	1.73
35131323--35131356	15	2.1	17	84	15	54	32	0	0	67	0.91
35131324--35131356	16	2.1	16	94	5	59	33	0	0	66	0.92
35131616--35132168	75	7.3	75	84	2	658	35	19	17	27	1.94
35131661--35132169	152	3.4	151	83	4	639	35	19	17	27	1.94
35136343--35136392	25	2.0	25	100	0	100	24	24	16	36	1.94
35138844--35138876	4	8.2	4	93	0	57	48	3	24	24	1.65
35142389--35142421	15	2.1	17	88	11	52	36	6	0	57	1.23
35142860--35142955	28	3.4	28	82	0	93	5	25	39	30	1.77
35142968--35143001	10	3.3	10	87	4	50	0	14	0	85	0.60
35143151--35143224	10	7.6	9	73	19	51	1	22	0	75	0.88
35143166--35143212	18	2.6	19	86	10	71	0	25	0	74	0.82
35143170--35143235	22	3.0	22	75	20	66	0	27	0	72	0.85
35143687--35143726	20	2.0	20	85	0	53	37	2	27	32	1.70
35143704--35143811	30	3.7	29	88	7	148	42	0	21	35	1.59
35143708--35143795	27	3.1	28	90	6	133	42	0	23	34	1.55
35147883--35147927	20	2.3	20	84	3	56	46	6	0	46	1.29
35148465--35148536	33	2.2	33	82	2	81	44	1	1	52	1.18
35149032--35149067	6	6.0	6	96	0	63	16	16	47	19	1.83
35161446--35161501	25	2.2	24	82	14	69	50	0	7	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35162161--35162209	25	2.0	25	83	0	62	38	0	16	44	1.48
35163944--35164096	50	3.1	50	65	3	128	35	21	20	22	1.96
35167009--35167075	20	3.2	21	73	19	59	28	1	5	64	1.26
35167043--35167080	20	1.9	20	88	0	58	39	0	5	55	1.23
35167104--35167150	20	2.4	20	85	3	60	38	2	6	53	1.39
35170069--35170095	4	6.8	4	100	0	54	22	0	0	77	0.76
35174998--35175034	19	1.9	19	89	10	58	48	2	0	48	1.15
35176162--35176224	31	2.0	31	100	0	126	19	19	12	49	1.79
35183927--35183969	19	2.3	19	84	15	54	30	23	0	46	1.52
35190762--35190798	18	2.0	19	89	5	58	51	0	43	5	1.24
35191602--35191640	18	2.2	18	85	0	51	28	38	0	33	1.57
35205948--35205997	12	4.5	12	78	19	63	22	14	6	58	1.58
35205948--35205986	20	2.0	20	100	0	78	20	15	5	58	1.55
35209412--35209479	35	1.9	35	96	0	127	29	16	2	51	1.59
35215630--35215678	20	2.5	19	80	6	53	59	12	0	28	1.34
35216251--35216551	163	1.8	163	92	0	503	30	4	23	41	1.75
35219458--35219587	57	2.3	57	86	2	181	25	18	6	49	1.72
35219574--35219607	5	6.6	5	93	6	59	17	17	0	64	1.29
35219571--35219608	11	3.5	11	92	7	69	18	18	0	63	1.32
35224126--35224152	5	5.4	5	100	0	54	59	0	0	40	0.98
35237877--35238000	46	2.8	46	91	3	200	27	22	16	33	1.96
35237877--35238111	37	5.8	45	87	8	207	26	21	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35237962--35238138	37	4.8	37	95	0	300	26	20	13	38	1.90
35245576--35245699	46	2.8	46	91	3	200	27	22	16	33	1.96
35245576--35245810	37	5.8	45	87	8	207	26	21	15	36	1.93
35245661--35245837	37	4.8	37	95	0	300	26	20	13	38	1.90
35257619--35257666	20	2.4	20	85	0	60	52	14	20	12	1.74
35257630--35257668	20	2.0	20	94	0	69	53	12	17	15	1.72
35257661--35257686	9	2.9	9	100	0	52	46	11	11	30	1.76
35260381--35260496	28	4.1	28	80	2	110	32	19	14	32	1.92
35264836--35265193	112	3.2	112	89	0	536	26	24	14	34	1.94
35269473--35269636	84	2.0	84	85	2	222	31	17	18	32	1.94
35269478--35269649	28	6.1	28	78	1	175	30	18	18	31	1.95
35270932--35271053	54	2.3	54	80	5	138	25	26	17	31	1.97
35270914--35271067	27	5.7	27	74	7	116	24	25	18	31	1.97
35270967--35271087	54	2.2	54	80	2	136	24	23	19	33	1.97
35296246--35296335	45	2.0	46	89	6	139	64	0	6	28	1.19
35297818--35297894	38	2.0	38	94	0	136	19	16	16	46	1.84
35299528--35299629	41	2.5	40	87	6	141	27	25	19	27	1.99
35299528--35299644	41	2.9	41	82	5	112	28	25	20	25	1.99
35307249--35307330	42	2.0	42	85	0	110	23	21	39	15	1.92
35311992--35312048	29	2.0	29	82	6	71	31	15	14	38	1.87
35312317--35312367	22	2.3	22	100	0	102	21	31	0	47	1.51
35312372--35312424	22	2.4	22	84	6	72	33	32	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35312320--35312419	52	1.9	52	87	0	146	28	32	0	40	1.57
35312458--35312519	29	2.1	29	85	5	81	40	0	1	58	1.08
35312610--35312643	15	2.3	15	90	5	52	26	0	5	67	1.13
35314088--35314261	29	6.0	29	88	0	240	43	23	1	31	1.61
35317459--35317734	125	2.2	126	88	3	407	31	21	16	30	1.95
35318442--35318479	20	1.9	20	88	0	58	28	28	10	31	1.90
35318507--35318573	30	2.2	30	89	0	98	25	25	16	32	1.96
35319811--35319878	30	2.3	30	86	0	91	35	13	23	27	1.92
35324609--35324669	31	2.0	31	100	0	122	32	19	6	40	1.77
35325467--35325526	24	2.5	24	76	10	68	40	25	13	21	1.89
35341585--35341803	51	4.3	51	88	4	318	32	15	23	28	1.95
35342006--35343679	556	3.0	556	98	0	3195	33	12	19	34	1.89
35349716--35349807	40	2.3	40	87	7	125	32	28	16	22	1.96
35352255--35352320	29	2.3	29	86	0	96	24	24	12	39	1.89
35357094--35357183	40	2.2	40	88	3	128	36	28	14	20	1.92
35359103--35359210	20	5.4	20	73	8	85	12	29	20	37	1.89
35359094--35359215	40	3.1	39	70	13	113	15	27	18	38	1.91
35362269--35362356	24	3.5	24	69	19	72	40	18	4	36	1.71
35362260--35362355	51	1.9	50	97	2	183	41	19	4	34	1.71
35362617--35362691	29	2.6	29	84	0	87	38	21	14	25	1.91
35368493--35368529	17	2.2	17	90	4	58	18	2	10	67	1.32
35368615--35368710	47	2.0	47	100	0	192	41	4	6	47	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35373662--35373713	16	3.2	16	86	0	77	28	23	7	40	1.82
35381045--35381084	14	2.9	14	84	0	53	42	17	7	32	1.77
35385500--35385551	19	2.7	20	71	17	54	38	0	1	59	1.08
35392072--35392364	96	3.1	96	98	0	568	53	7	3	35	1.48
35399889--35400098	40	5.3	39	89	4	242	25	21	27	25	1.99
35399836--35400098	120	2.2	120	82	4	309	25	21	27	25	1.99
35399837--35400133	80	3.7	80	81	6	230	26	21	27	24	1.99
35407839--35408048	40	5.3	39	89	4	242	25	21	27	25	1.99
35407786--35408048	120	2.2	120	82	4	309	25	21	27	25	1.99
35407787--35408083	80	3.7	80	81	6	230	26	21	27	24	1.99
35426727--35427327	259	2.3	259	91	1	974	36	15	10	38	1.81
35428400--35428633	115	2.0	115	97	0	441	32	14	18	34	1.91
35428890--35428991	25	4.2	24	75	7	71	15	28	19	36	1.93
35428914--35428991	24	3.2	24	75	8	68	16	29	17	35	1.93
35432686--35432747	25	2.5	25	80	12	83	0	17	4	77	0.94
35433291--35433685	100	4.0	100	86	2	515	23	18	24	33	1.97
35433291--35433655	50	7.3	50	68	5	218	23	18	23	34	1.96
35433706--35433993	44	6.7	44	74	10	172	28	21	18	31	1.97
35433998--35434576	132	4.4	132	83	3	702	23	24	21	31	1.98
35435792--35435836	21	2.2	20	88	8	63	20	13	0	66	1.24
35442536--35442579	23	2.0	22	82	13	54	4	15	4	75	1.14
35444464--35444506	21	2.0	22	82	13	54	62	2	13	20	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35454585--35454609	10	2.5	10	100	0	50	72	8	0	20	1.10
35457073--35457190	33	3.5	33	83	4	148	41	36	8	13	1.75
35467322--35467361	20	2.1	19	95	4	71	52	15	25	5	1.61
35470951--35470980	15	2.0	15	93	0	51	3	13	16	66	1.37
35483800--35483838	16	2.5	15	83	8	51	43	2	2	51	1.29
35485031--35486244	613	2.0	613	93	0	2061	36	19	15	29	1.92
35489695--35489786	45	2.0	45	95	0	166	28	29	15	27	1.96
35494610--35494639	13	2.3	13	94	0	51	13	10	26	50	1.73
35495003--35495048	15	3.1	15	84	6	58	65	8	10	15	1.47
35496466--35496498	16	2.1	16	88	5	50	30	21	3	45	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153