genome.fa.s18.2.7.7.80.10.50.1000.140.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  140  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43853528--43853586	24	2.5	24	89	5	86	52	18	1	27	1.55
43855182--43855358	87	2.0	87	90	0	273	41	16	29	11	1.85
43855707--43855889	43	4.3	42	88	4	235	32	18	24	24	1.97
43860979--43861021	16	2.7	15	85	7	50	58	2	0	39	1.11
43860978--43861021	23	1.9	23	90	0	70	56	2	0	40	1.11
43862313--43862364	17	2.7	19	71	17	54	42	19	13	25	1.87
43867481--43867552	27	2.8	26	85	4	92	26	19	27	26	1.99
43868483--43868516	16	2.1	16	88	0	50	23	0	0	76	0.79
43878341--43878394	16	3.4	16	94	0	90	33	0	35	31	1.58
43878373--43878470	44	2.2	44	85	1	124	34	5	27	32	1.79
43878376--43878482	44	2.6	40	73	16	117	35	5	28	30	1.80
43878605--43878659	25	2.2	25	84	9	69	52	1	0	45	1.11
43878834--43878894	28	2.2	28	85	5	81	50	3	0	45	1.17
43878800--43879016	91	2.4	89	85	6	299	47	4	3	45	1.38
43878834--43878976	44	3.2	42	70	20	119	48	2	2	46	1.28
43878841--43878997	47	3.4	47	68	15	128	49	3	1	44	1.31
43882825--43882899	25	3.1	25	77	14	102	34	8	6	50	1.58
43882829--43882899	23	3.0	24	78	14	92	33	8	7	50	1.60
43884089--43884138	23	2.2	23	86	13	68	50	24	8	18	1.73
43884104--43884150	22	2.1	22	84	7	60	59	19	4	17	1.53
43884890--43884927	17	2.2	17	100	0	76	65	10	13	10	1.47
43886589--43886719	69	1.9	71	85	3	185	23	7	24	44	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43887835--43887923	37	2.4	37	86	3	126	40	14	11	33	1.82
43887981--43888096	33	3.5	33	84	4	171	45	14	6	32	1.72
43901284--43901321	16	2.4	16	95	0	67	34	21	0	44	1.52
43902695--43902923	100	2.2	106	83	8	292	39	11	20	28	1.87
43905265--43905343	37	2.1	37	90	0	122	25	31	18	24	1.98
43905462--43905981	47	11.1	47	88	2	749	28	30	8	32	1.87
43911038--43911160	46	2.7	46	90	0	192	33	4	9	52	1.53
43912152--43912186	16	2.2	16	89	0	52	40	0	31	28	1.57
43912199--43912294	44	2.1	46	84	7	126	33	5	25	36	1.78
43915396--43915478	26	3.2	26	66	27	68	27	13	25	33	1.93
43915392--43915579	51	3.7	51	81	5	186	27	14	27	30	1.95
43930329--43930356	3	9.3	3	100	0	56	32	0	0	67	0.91
43931583--43931628	6	7.7	6	100	0	92	34	0	15	50	1.44
43950621--43950668	14	3.6	13	81	10	53	29	4	16	50	1.64
43960212--43960250	20	2.0	20	90	10	62	56	5	23	15	1.59
43964963--43965037	7	10.1	7	86	11	105	16	16	12	56	1.68
43964964--43965037	30	2.5	30	97	0	139	16	16	12	55	1.69
43964963--43965037	23	3.4	21	85	10	105	16	16	12	56	1.68
43964964--43965046	30	2.8	30	79	20	102	15	15	12	56	1.67
43967642--43967720	40	2.0	40	92	0	131	20	31	15	32	1.93
43972513--43972569	28	2.0	28	96	0	105	22	31	22	22	1.98
43972688--43972874	101	1.9	101	100	0	374	39	11	19	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43974830--43975023	44	4.4	45	78	5	166	22	22	21	33	1.97
43982837--43982889	27	2.0	26	92	0	79	50	11	33	1	1.49
43994180--43994212	12	3.0	11	87	12	50	72	3	0	24	0.98
43998244--43998289	13	3.5	13	82	14	58	47	17	0	34	1.48
44001350--44001406	29	2.0	28	86	3	78	40	1	1	56	1.20
44001883--44001919	19	1.9	19	88	0	56	51	0	0	48	1.00
44004274--44004320	25	1.9	24	86	4	67	61	12	6	19	1.52
44006964--44007009	19	2.3	20	88	7	76	26	8	15	50	1.73
44014684--44014782	28	3.5	28	87	4	119	27	15	27	30	1.96
44018945--44018991	24	2.0	24	95	0	85	6	23	10	59	1.53
44021277--44021343	20	3.4	20	91	2	109	47	16	10	25	1.78
44021735--44021935	40	5.0	40	88	1	287	12	16	26	43	1.84
44023734--44023773	21	1.9	21	85	10	55	27	15	2	55	1.53
44027637--44027800	43	3.8	43	78	9	156	31	28	17	22	1.97
44028805--44028829	13	1.9	13	100	0	50	40	24	4	32	1.73
44034009--44034072	22	2.9	22	83	6	76	62	3	0	34	1.11
44034409--44034452	23	1.9	23	100	0	88	29	4	25	40	1.75
44034945--44034971	13	2.1	13	100	0	54	40	14	14	29	1.86
44035654--44035693	3	13.0	3	84	5	53	30	5	2	62	1.29
44040593--44040777	51	3.6	51	78	5	205	26	18	25	28	1.98
44043460--44043556	47	2.0	47	84	2	122	28	15	24	30	1.96
44046295--44046473	51	3.5	50	76	2	153	25	18	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44052550--44052600	26	1.9	27	88	4	77	23	23	21	31	1.98
44054404--44054598	29	6.7	29	78	5	151	23	23	13	40	1.90
44054433--44054618	58	3.2	58	74	4	142	23	23	13	39	1.90
44054433--44054618	87	2.1	87	81	2	212	23	23	13	39	1.90
44054875--44055216	169	2.0	169	98	0	657	35	19	7	37	1.81
44064657--44064706	24	2.0	26	85	14	70	30	2	6	62	1.31
44064691--44064798	23	4.7	23	76	10	98	35	9	1	53	1.44
44064857--44064915	24	2.4	23	77	22	59	35	1	3	59	1.24
44068519--44068563	15	3.0	15	86	0	63	75	6	4	13	1.15
44070815--44071033	45	4.9	45	67	16	123	26	23	24	26	2.00
44070794--44071170	89	4.2	89	87	0	486	27	24	23	25	2.00
44070842--44070986	44	3.3	44	70	16	129	24	26	22	25	2.00
44071280--44071798	174	3.0	171	82	4	639	30	20	21	28	1.98
44071289--44071663	85	4.3	86	72	8	217	29	20	21	28	1.98
44071289--44071699	44	9.5	42	71	8	254	30	20	20	28	1.98
44071459--44071698	129	1.9	129	82	5	306	30	20	19	29	1.97
44071630--44071738	44	2.5	44	80	5	105	32	16	18	33	1.93
44073179--44073293	23	4.9	24	76	12	96	32	7	4	55	1.48
44073176--44073327	47	3.3	46	75	10	123	33	6	3	56	1.41
44073205--44073326	46	2.7	46	76	13	117	35	7	2	54	1.41
44073135--44073337	24	8.7	23	71	10	128	33	6	4	54	1.47
44073251--44073404	69	2.2	69	78	11	165	35	7	4	52	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44075688--44075738	26	2.0	26	84	0	66	41	15	17	25	1.89
44079453--44079485	17	1.9	17	100	0	66	60	24	9	6	1.49
44079573--44079624	24	2.2	24	89	0	77	55	9	1	32	1.43
44079835--44079865	7	4.4	7	100	0	62	45	12	0	41	1.42
44112766--44112796	16	1.9	16	93	0	53	54	9	0	35	1.33
44116521--44116715	43	4.5	43	81	4	187	41	22	12	23	1.88
44124272--44124310	4	9.8	4	82	0	51	17	23	5	53	1.63
44124564--44124697	50	2.7	50	82	0	142	19	27	22	30	1.98
44128591--44128621	14	2.2	14	100	0	62	45	25	0	29	1.54
44136898--44136965	27	2.5	27	85	0	100	23	23	23	29	1.99
44140372--44140429	17	3.6	17	75	11	59	36	3	1	58	1.25
44140441--44140556	62	1.9	59	85	5	160	40	4	3	51	1.38
44141200--44141226	14	1.9	14	100	0	54	29	0	25	44	1.54
44142307--44142362	22	2.5	22	73	0	58	50	19	7	23	1.72
44143016--44143087	35	2.1	36	81	5	85	56	6	26	9	1.56
44147253--44147514	39	6.7	40	87	7	337	25	22	27	24	2.00
44158804--44158848	20	2.3	20	96	3	83	35	15	17	31	1.92
44169137--44169185	23	2.1	23	100	0	98	16	4	18	61	1.50
44192400--44192467	29	2.3	29	80	5	75	39	2	0	57	1.14
44192415--44192480	29	2.3	29	81	0	69	37	1	3	57	1.23
44192883--44192934	26	2.0	26	100	0	104	23	19	19	38	1.93
44194871--44194981	29	3.8	29	78	7	116	40	9	13	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44202886--44202932	9	5.3	9	97	2	87	29	0	0	70	0.88
44202886--44202941	18	3.2	18	82	12	71	28	1	0	69	0.98
44211213--44211257	22	2.0	22	91	0	72	33	2	15	48	1.57
44223376--44223477	43	2.4	43	86	0	141	38	25	13	22	1.91
44230532--44230564	7	4.7	7	96	0	57	48	24	0	27	1.51
44230532--44230571	21	1.9	21	84	0	53	52	22	0	25	1.47
44230554--44230674	64	1.9	64	84	3	163	44	32	0	22	1.59
44230618--44230712	7	13.4	7	76	2	82	47	28	1	23	1.58
44230618--44230712	14	6.7	14	79	2	91	47	28	1	23	1.58
44231136--44231238	40	2.6	40	87	0	143	28	24	18	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153