genome.fa.s18.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  60  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19357667--19357786	30	4.1	29	75	13	104	31	20	3	44	1.68
19358032--19358081	10	5.2	10	80	7	59	70	0	30	0	0.88
19358035--19358077	19	2.3	19	88	11	63	69	0	30	0	0.88
19358137--19358182	3	15.0	3	82	13	58	63	0	36	0	0.95
19358140--19358168	10	2.9	10	100	0	58	62	0	37	0	0.96
19358137--19358182	13	3.7	13	81	18	62	63	0	36	0	0.95
19358538--19358575	16	2.3	17	86	4	51	23	0	2	73	0.95
19358739--19358792	16	3.2	16	75	14	56	35	14	9	40	1.78
19358728--19358884	17	8.8	18	71	14	121	28	12	12	47	1.77
19358716--19358937	35	6.3	34	75	11	146	30	13	11	44	1.80
19358749--19358939	17	10.8	17	66	19	72	30	12	12	45	1.78
19358955--19358992	20	1.9	19	89	5	58	52	7	0	39	1.31
19358984--19359020	17	2.3	17	81	9	51	37	16	10	35	1.83
19372431--19372552	17	7.4	17	74	7	90	34	9	13	42	1.77
19372439--19372552	34	3.4	33	82	4	140	31	10	14	43	1.79
19372572--19372609	16	2.3	17	81	4	51	36	15	10	36	1.82
19381806--19381851	21	2.2	22	84	7	60	52	2	0	45	1.13
19381825--19381883	25	2.3	27	80	11	79	54	0	0	45	0.99
19382964--19383017	14	3.8	14	80	4	54	40	12	9	37	1.76
19394558--19394933	138	2.7	139	79	7	385	50	11	11	26	1.73
19399853--19399886	9	3.7	9	88	4	50	64	0	26	8	1.22
19399891--19399934	22	2.0	22	86	0	61	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19407971--19408173	33	5.6	33	70	19	145	34	26	18	21	1.96
19408002--19408192	33	5.0	40	73	21	203	34	27	16	21	1.95
19407890--19408192	75	4.0	75	92	2	457	33	26	17	23	1.96
19415419--19415560	69	2.1	69	97	0	266	32	25	19	22	1.98
19415508--19415613	43	2.5	43	98	0	203	33	25	16	24	1.96
19415652--19415767	33	3.0	41	73	21	149	34	28	16	20	1.94
19415551--19415750	102	2.0	103	91	1	330	33	28	19	19	1.96
19415615--19416002	196	2.0	196	94	0	677	30	27	17	24	1.97
19427509--19427573	28	2.3	28	89	0	103	46	10	33	9	1.71
19431752--19431930	51	3.5	51	92	0	288	32	15	22	29	1.94
19432110--19432386	46	6.0	46	86	0	374	29	26	9	34	1.88
19432110--19432386	92	3.0	92	92	0	428	29	26	9	34	1.88
19434822--19434982	51	3.2	51	89	2	245	33	15	23	27	1.95
19437336--19437374	15	2.5	16	87	8	62	35	2	0	61	1.10
19437669--19437700	16	2.0	16	93	0	55	18	34	6	40	1.76
19437897--19437945	24	2.0	24	100	0	98	44	8	0	46	1.33
19441713--19441778	21	3.1	21	88	0	96	7	27	7	57	1.53
19441888--19441958	33	2.2	33	92	0	115	18	18	8	54	1.67
19441895--19441955	15	3.9	15	76	19	61	13	21	6	59	1.57
19444156--19444198	20	2.2	20	83	8	52	39	0	2	58	1.11
19444233--19444266	13	2.7	13	90	4	52	0	64	2	32	1.08
19444391--19444444	18	3.2	16	82	12	63	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19446659--19446697	12	3.5	11	86	13	53	64	0	5	30	1.15
19446659--19446696	15	2.4	16	87	12	53	63	0	5	31	1.17
19448054--19448537	44	11.5	42	78	12	496	23	23	22	30	1.99
19448054--19448537	84	5.8	84	89	4	703	23	23	22	30	1.99
19448177--19448608	168	2.6	168	89	2	521	25	23	20	30	1.98
19448552--19448715	44	3.8	43	71	9	120	29	20	18	31	1.96
19448557--19448715	87	1.8	87	82	5	205	29	20	18	31	1.96
19464715--19464767	3	17.3	3	84	11	63	62	0	5	32	1.19
19466219--19466278	19	3.2	18	81	11	59	53	5	0	41	1.23
19472881--19472911	12	2.7	12	95	5	55	29	12	0	58	1.35
19473203--19473331	65	2.0	66	84	3	172	45	9	4	40	1.57
19475923--19475971	26	1.9	25	83	4	62	67	0	2	30	1.02
19482797--19482826	12	2.4	13	94	5	53	46	10	16	26	1.78
19486820--19487877	525	2.0	525	99	0	2093	28	17	19	33	1.95
19494616--19494659	19	2.2	20	84	4	54	38	0	2	59	1.10
19494664--19494709	20	2.2	20	85	11	58	34	0	2	63	1.07
19495518--19495597	32	2.5	32	84	8	101	42	10	11	36	1.74
19498773--19498816	22	2.0	22	95	0	79	34	18	11	36	1.86
19498826--19498855	15	2.0	15	100	0	60	53	0	0	46	1.00
19502160--19502198	20	2.0	20	84	0	51	46	7	12	33	1.71
19507576--19507601	5	5.2	5	100	0	52	42	19	19	19	1.90
19517415--19517467	28	1.9	27	92	3	88	13	7	20	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19520881--19520918	20	1.9	20	94	0	67	34	10	5	50	1.59
19521036--19521159	50	2.4	52	87	4	148	51	14	8	25	1.71
19521061--19521162	50	2.0	50	100	0	204	54	15	9	19	1.68
19522104--19522141	14	2.9	14	92	7	62	73	5	13	7	1.22
19522232--19522257	4	6.5	4	100	0	52	76	0	0	23	0.78
19524227--19524272	6	7.7	6	95	0	83	0	50	2	47	1.13
19525657--19525691	15	2.2	16	90	5	54	60	0	0	40	0.97
19531615--19531675	27	2.3	27	91	0	95	27	8	36	27	1.85
19532089--19532118	12	2.6	12	94	5	53	80	0	6	13	0.91
19532969--19533033	9	6.7	10	76	15	57	38	1	0	60	1.07
19532969--19533040	10	7.6	9	75	16	56	36	1	1	61	1.14
19532969--19533044	29	2.6	28	80	10	82	36	1	1	60	1.13
19532969--19533040	19	3.7	19	77	18	60	36	1	1	61	1.14
19533105--19533156	10	5.1	10	82	11	61	38	3	0	57	1.17
19533105--19533157	22	2.6	21	82	11	65	39	3	0	56	1.17
19535558--19535602	3	15.0	3	100	0	90	33	0	0	66	0.92
19537599--19537652	27	2.0	27	100	0	108	44	18	3	33	1.67
19537599--19537645	16	3.2	16	66	27	50	44	14	4	36	1.65
19538440--19538486	21	2.3	21	85	10	62	2	31	0	65	1.04
19539370--19539399	15	1.9	15	93	6	51	73	13	6	6	1.24
19539797--19539840	23	2.0	22	86	4	61	34	2	2	61	1.21
19540895--19540990	31	3.1	31	92	3	165	45	12	9	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19546748--19546843	31	3.1	31	95	3	174	45	13	9	31	1.75
19547257--19547281	3	8.3	3	100	0	50	64	0	0	36	0.94
19548786--19548861	17	4.3	16	76	14	53	48	2	2	46	1.30
19551064--19551108	20	2.2	20	84	4	54	20	26	26	26	1.99
19552550--19552580	5	6.4	5	92	7	55	41	0	0	58	0.98
19560941--19560980	9	4.4	9	87	0	62	42	22	7	27	1.80
19561111--19561145	18	1.9	18	88	0	52	8	2	45	42	1.49
19569000--19569034	15	2.2	16	90	5	54	40	0	0	60	0.97
19577255--19577350	23	4.2	23	89	0	138	33	25	20	20	1.97
19577652--19577692	18	2.3	18	88	12	59	43	19	0	36	1.51
19580989--19581033	21	2.2	20	84	11	56	31	11	17	40	1.85
19587421--19587816	47	8.4	47	91	3	595	27	30	9	33	1.88
19587639--19587761	22	5.3	22	62	18	61	26	30	9	32	1.89
19587421--19587816	143	2.8	142	90	5	606	27	30	9	33	1.88
19587421--19587816	190	2.1	189	90	5	615	27	30	9	33	1.88
19598778--19598811	17	2.1	16	88	5	50	52	20	0	26	1.46
19599677--19599754	29	2.7	29	78	9	88	65	2	2	29	1.19
19599943--19600000	19	3.0	20	82	10	75	31	12	0	56	1.35
19606154--19606197	13	3.0	15	84	15	65	59	0	0	40	0.98
19606157--19606191	8	4.4	8	92	0	61	60	0	0	40	0.97
19606178--19606231	21	2.5	22	84	9	65	72	3	1	22	1.10
19606155--19606218	29	2.2	29	83	5	76	65	1	0	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19606217--19606285	11	5.9	11	72	12	57	72	1	21	4	1.10
19610453--19610540	25	3.5	25	95	0	149	32	20	29	17	1.95
19610444--19610558	50	2.3	50	80	3	133	35	21	26	15	1.94
19610660--19610730	24	2.9	25	85	4	92	40	21	22	15	1.90
19620253--19620435	62	3.0	62	92	3	314	37	5	7	49	1.53
19620375--19620451	21	3.2	25	66	19	63	32	7	9	50	1.63
19621227--19621264	14	2.9	13	81	11	51	18	13	10	57	1.63
19626459--19626608	46	3.1	46	75	14	158	30	27	16	26	1.97
19632232--19632266	14	2.5	14	95	0	61	40	5	20	34	1.76
19633688--19633747	31	1.9	31	82	0	75	65	8	0	26	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153