genome.fa.s18.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  126  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39766095--39766119	13	1.9	13	100	0	50	28	8	8	56	1.57
39768704--39768768	22	3.0	21	70	16	60	12	23	21	43	1.86
39770936--39770965	15	2.0	15	93	0	51	30	13	13	43	1.82
39794946--39795133	95	2.0	95	100	0	376	44	7	17	30	1.76
39796876--39796918	20	2.2	20	100	0	86	18	30	32	18	1.95
39799203--39799248	25	1.9	24	83	16	60	30	4	4	60	1.35
39804063--39804202	41	3.5	41	82	4	153	27	26	18	27	1.98
39812252--39812383	54	2.4	54	93	2	221	31	15	26	25	1.96
39827289--39827321	17	1.9	17	93	0	57	15	12	12	60	1.59
39833087--39833128	12	3.5	12	96	0	75	9	19	45	26	1.80
39838780--39838876	41	2.4	41	82	0	113	25	23	24	25	2.00
39852822--39852856	12	2.8	12	91	4	52	25	11	11	51	1.71
39854690--39854728	18	2.2	17	82	13	51	5	17	2	74	1.12
39862917--39863088	65	2.6	65	85	0	218	31	20	22	25	1.98
39871394--39871422	15	1.9	15	100	0	58	24	6	0	68	1.13
39876151--39876211	28	2.2	28	84	0	77	44	13	19	22	1.85
39881581--39881788	104	2.0	104	100	0	416	36	20	17	25	1.94
39896556--39896639	5	16.4	5	90	7	107	42	0	0	57	0.99
39897574--39897653	25	3.3	24	79	8	83	16	26	20	37	1.93
39901306--39901343	14	2.8	13	88	7	58	36	13	5	44	1.66
39905655--39905699	21	2.1	22	84	12	58	66	8	11	13	1.44
39908500--39908738	35	7.1	33	83	7	277	41	17	23	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39908500--39908737	67	3.6	67	96	0	422	41	17	23	18	1.90
39916227--39916393	35	4.9	35	87	5	252	39	18	23	18	1.92
39916217--39916393	67	2.6	67	90	3	266	40	17	23	18	1.91
39917379--39917434	25	2.2	25	90	0	85	14	26	25	33	1.94
39917427--39917482	22	2.5	22	88	5	78	12	25	19	42	1.86
39919604--39919643	18	2.2	18	86	8	55	12	15	50	22	1.77
39919999--39920519	27	19.3	27	72	7	297	38	19	20	21	1.94
39920010--39920499	81	6.1	80	77	3	435	38	19	20	22	1.94
39919999--39920515	54	9.6	54	76	5	332	38	19	20	21	1.94
39920511--39920646	24	5.6	24	80	11	127	23	8	23	44	1.81
39920570--39920639	11	6.0	11	71	12	59	20	5	25	48	1.71
39920538--39920646	48	2.3	48	85	6	141	23	7	23	44	1.78
39920815--39920897	32	2.6	31	76	10	96	18	18	25	38	1.92
39922351--39922435	42	2.0	42	88	0	125	25	34	18	21	1.96
39930105--39930140	19	1.9	18	88	5	54	52	5	5	36	1.48
39936318--39936581	40	6.7	40	89	5	360	25	27	21	25	1.99
39944928--39945189	39	6.7	40	88	7	337	24	27	22	25	2.00
39946794--39946858	23	2.8	24	93	6	116	50	4	23	21	1.67
39949839--39950653	407	2.0	407	100	0	1630	33	12	18	35	1.88
39950842--39951030	51	3.7	51	81	4	231	25	16	26	30	1.97
39950844--39951036	101	1.9	101	87	3	280	26	17	26	30	1.97
39958928--39958990	23	2.7	23	97	2	117	20	20	12	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39960492--39961959	742	2.0	742	99	0	2927	34	15	20	28	1.94
39970812--39971073	39	6.7	40	88	7	337	24	27	22	25	2.00
39977573--39977642	30	2.3	30	90	0	104	17	28	31	22	1.96
39979384--39979440	25	2.3	25	90	0	87	38	29	17	14	1.89
39979420--39979667	114	2.2	114	86	0	345	33	29	22	14	1.93
39979420--39979667	38	6.6	38	84	0	309	33	29	22	14	1.93
39984049--39984091	3	14.3	3	100	0	86	32	0	0	67	0.91
39997568--39997594	9	3.0	9	100	0	54	55	0	11	33	1.35
40001923--40001968	23	2.0	23	100	0	92	21	17	8	52	1.71
40007937--40007980	21	2.1	21	100	0	88	22	4	38	34	1.75
40010314--40010391	29	2.7	28	84	11	104	25	15	30	28	1.96
40010344--40010671	174	1.9	174	98	0	629	29	14	25	30	1.95
40014426--40014523	48	2.0	48	90	0	151	33	18	9	38	1.82
40023572--40023598	2	13.5	2	100	0	54	48	0	51	0	1.00
40024819--40024875	30	1.9	29	85	3	78	33	22	22	21	1.97
40028089--40028133	8	6.1	8	75	19	53	24	0	11	64	1.26
40029007--40029110	42	2.5	42	90	3	156	49	5	1	43	1.37
40029096--40029141	16	3.1	15	87	9	60	52	8	8	30	1.62
40029105--40029141	16	2.3	16	95	0	65	48	8	10	32	1.67
40031657--40031721	22	3.2	21	70	20	66	30	4	16	47	1.67
40031651--40031744	39	2.4	39	96	0	170	36	3	18	42	1.66
40031651--40031763	39	2.9	38	85	7	95	36	2	17	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40035916--40035944	15	1.9	15	100	0	58	24	0	0	75	0.80
40035916--40035960	18	2.7	17	86	10	58	22	0	2	75	0.91
40043820--40043907	27	3.3	27	76	16	78	32	3	5	57	1.39
40044106--40044175	30	2.3	31	82	7	81	14	12	5	67	1.40
40044199--40044236	13	3.1	12	85	14	51	15	2	7	73	1.17
40051322--40051549	44	5.2	44	72	8	194	25	24	25	25	2.00
40051719--40051862	44	3.3	44	66	11	123	24	27	24	24	2.00
40051983--40052205	44	5.1	44	64	16	138	26	23	26	23	2.00
40051311--40052205	88	10.2	88	86	2	974	27	24	24	23	2.00
40052297--40052412	44	2.6	44	79	2	117	31	19	21	27	1.98
40052427--40052543	45	2.6	44	83	1	153	32	19	20	27	1.97
40053609--40053641	16	2.1	16	100	0	66	0	24	69	6	1.10
40069017--40069152	37	3.7	36	75	17	118	35	13	16	34	1.88
40093027--40093081	21	2.5	22	82	2	67	69	0	23	7	1.14
40101242--40101275	17	2.1	16	88	5	50	76	14	0	8	1.01
40107100--40107159	25	2.4	25	83	10	70	58	0	3	38	1.15
40107100--40107159	8	7.2	8	76	14	50	58	0	3	38	1.15
40107774--40107807	16	2.2	15	89	5	50	55	0	0	44	0.99
40107865--40107921	30	1.9	30	85	7	80	45	12	8	33	1.72
40111325--40111689	179	2.0	179	95	0	658	30	20	15	33	1.94
40126379--40126632	78	3.3	78	90	1	377	38	3	17	40	1.69
40126991--40127233	31	7.6	30	72	18	172	27	8	18	44	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40126976--40127286	64	4.8	65	87	4	369	29	7	18	45	1.76
40127121--40127229	14	6.8	17	66	20	65	27	8	21	43	1.81
40127018--40127287	31	8.2	32	74	16	214	29	6	19	44	1.75
40132037--40132280	132	1.8	132	84	1	337	30	22	18	28	1.97
40132422--40132476	28	2.0	28	81	0	65	23	34	20	21	1.97
40132156--40132486	170	1.9	171	83	3	425	28	25	16	29	1.97
40137138--40137202	34	1.9	34	93	0	112	44	30	0	24	1.54
40146542--40146846	59	5.3	59	70	13	287	33	23	15	27	1.95
40146484--40146793	54	5.6	54	71	13	268	31	24	16	27	1.96
40146488--40146846	113	3.2	113	100	0	718	32	23	15	27	1.95
40149557--40149608	27	1.9	27	84	0	68	21	19	30	28	1.97
40159482--40159537	30	1.9	28	82	13	69	60	10	14	14	1.58
40165326--40165380	20	2.8	19	76	15	58	43	20	25	10	1.84
40174916--40175401	240	2.0	241	94	0	857	34	16	14	33	1.90
40175581--40175747	9	17.6	9	73	10	127	47	20	0	30	1.55
40175598--40175714	39	3.0	39	92	0	189	47	21	0	30	1.51
40175581--40175732	39	4.1	37	85	6	148	48	21	0	30	1.55
40181296--40181336	21	2.0	21	90	0	64	29	17	51	2	1.58
40181634--40181740	43	2.5	43	89	0	160	24	16	26	32	1.96
40183258--40183325	28	2.4	28	97	0	127	22	13	27	36	1.91
40183299--40183661	43	8.4	43	93	0	627	18	19	28	32	1.96
40189958--40190041	20	4.4	19	73	23	70	33	5	1	59	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40189963--40190012	16	2.8	17	85	11	57	36	8	0	56	1.29
40191746--40191782	18	2.1	18	89	0	56	54	0	24	21	1.45
40194624--40194657	17	2.0	17	94	0	59	38	2	11	47	1.55
40194906--40195067	81	2.0	81	98	0	315	40	18	15	25	1.90
40199713--40199746	17	2.0	17	94	0	59	47	11	2	38	1.55
40220843--40220872	12	2.4	13	94	5	53	90	3	0	6	0.56
40221990--40222019	3	10.0	3	92	0	51	63	0	33	3	1.11
40222721--40222758	13	2.9	13	85	11	51	31	0	2	65	1.06
40233173--40233246	33	2.2	33	82	0	85	22	10	50	16	1.76
40235928--40235973	21	2.2	21	100	0	92	8	19	41	30	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153