genome.fa.s18.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  121  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37921864--37921956	29	3.3	29	74	14	86	29	2	2	66	1.15
37925219--37925462	122	2.0	122	97	0	461	42	18	15	23	1.89
37933716--37933749	16	2.2	15	89	5	50	44	0	0	55	0.99
37948823--37948849	14	1.9	14	100	0	54	29	11	7	51	1.64
37983649--37983736	28	3.1	27	83	3	104	29	26	23	20	1.99
37985976--37986153	27	6.6	27	83	3	205	26	15	28	29	1.96
37985977--37986132	82	1.9	81	88	3	233	26	15	28	29	1.96
37985973--37986153	82	2.2	81	83	2	229	27	15	27	29	1.96
37993585--37993762	27	6.6	27	83	3	205	26	15	28	29	1.96
37993586--37993741	82	1.9	81	88	3	233	26	15	28	29	1.96
37993582--37993762	82	2.2	81	83	2	229	27	15	27	29	1.96
37995117--37995338	27	8.2	27	88	2	329	17	19	19	43	1.89
38007871--38007907	15	2.4	16	82	13	51	37	24	2	35	1.70
38012062--38012111	17	2.9	17	79	5	57	50	0	2	48	1.12
38012758--38012797	16	2.5	16	95	0	71	25	5	35	35	1.78
38028059--38028099	21	2.0	21	90	0	64	19	29	21	29	1.98
38031478--38031531	25	2.2	24	83	3	63	37	11	9	42	1.73
38032810--38032847	19	2.0	20	85	15	53	63	0	7	28	1.23
38032964--38032989	12	2.2	12	100	0	52	61	0	7	30	1.24
38034322--38034361	11	3.5	11	87	12	62	32	0	0	67	0.91
38034322--38034369	24	2.0	24	92	8	80	35	0	0	64	0.94
38034326--38034379	13	4.3	13	79	15	60	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38034418--38034486	17	4.2	16	77	15	70	47	2	0	49	1.16
38034520--38034572	27	1.9	27	84	3	70	49	1	0	49	1.12
38036264--38036377	58	2.0	58	96	0	210	30	14	9	44	1.78
38037067--38037108	17	2.6	16	92	3	66	35	11	0	52	1.38
38043316--38043347	16	1.9	17	93	6	57	37	21	0	40	1.54
38043508--38043678	43	4.0	43	79	8	181	32	26	18	22	1.97
38043508--38043663	84	1.9	84	86	5	226	30	27	18	23	1.98
38046499--38046526	10	2.8	10	100	0	56	89	0	10	0	0.49
38049112--38049153	17	2.5	17	84	3	59	66	0	0	33	0.92
38051945--38051991	18	2.4	18	86	10	58	31	0	0	68	0.90
38051945--38051985	21	2.0	20	86	13	57	36	0	0	63	0.95
38051966--38052010	20	2.4	18	85	7	54	24	0	6	68	1.13
38052856--38052897	15	2.7	17	82	17	56	57	0	0	42	0.99
38058385--38058532	57	2.5	57	82	9	172	31	21	25	22	1.98
38058597--38058731	67	2.0	67	91	0	216	22	17	31	28	1.96
38061151--38061232	37	2.3	35	95	4	146	29	10	17	42	1.83
38061157--38061218	21	3.2	21	65	21	62	32	9	16	41	1.80
38071332--38071380	16	2.8	17	79	17	55	20	6	2	71	1.18
38071371--38071415	21	2.1	21	83	0	54	53	0	0	46	1.00
38079400--38079453	21	2.5	22	93	3	92	46	18	24	11	1.81
38080440--38080484	5	9.0	5	100	0	90	60	0	0	40	0.97
38082125--38082157	7	4.7	7	100	0	66	87	0	0	12	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38082117--38082157	21	2.0	21	90	9	66	85	0	2	12	0.70
38091316--38091818	144	3.6	142	83	4	502	32	17	22	27	1.96
38091432--38091827	144	2.8	144	85	2	517	32	17	21	28	1.96
38091988--38092054	33	2.0	33	100	0	134	34	17	17	29	1.94
38095265--38095307	17	2.5	17	84	0	68	11	23	37	27	1.89
38096290--38096358	26	2.7	26	88	0	93	24	20	28	26	1.99
38126699--38126808	54	2.0	54	94	3	195	40	13	18	27	1.88
38128947--38129052	50	2.1	49	81	8	117	22	27	16	33	1.95
38128994--38129052	25	2.4	25	79	0	73	28	27	15	28	1.96
38131150--38131255	54	2.0	54	92	3	178	39	14	17	28	1.89
38133290--38133432	24	5.9	24	70	12	87	18	25	18	37	1.93
38133351--38133437	25	3.5	25	70	13	63	20	24	19	35	1.96
38133341--38133445	50	2.1	49	80	5	113	17	25	20	36	1.94
38136353--38136396	21	2.2	20	84	8	54	27	34	20	18	1.96
38144230--38144279	20	2.7	18	77	22	59	50	4	2	44	1.32
38151917--38151947	2	15.5	2	100	0	62	51	48	0	0	1.00
38155192--38155236	20	2.4	18	89	10	65	51	11	0	37	1.38
38155213--38155247	16	2.2	16	90	5	54	45	20	0	34	1.51
38157551--38157609	26	2.3	25	82	8	73	38	5	22	33	1.76
38168501--38168547	4	11.8	4	95	0	85	51	21	0	27	1.48
38175319--38175390	28	2.5	28	82	13	94	62	0	1	36	1.04
38175320--38175413	28	3.3	27	80	12	93	63	1	1	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38175678--38175842	10	16.3	10	68	19	51	32	2	4	60	1.29
38175766--38175822	21	2.8	21	89	2	80	35	1	1	61	1.17
38175677--38175821	31	4.8	30	70	18	79	31	2	4	60	1.32
38176155--38176192	19	2.0	20	84	5	51	39	5	2	52	1.38
38176531--38176592	20	3.2	19	86	6	81	58	3	0	38	1.15
38176613--38176647	10	3.5	10	96	0	61	62	11	0	25	1.28
38177368--38177440	20	3.5	20	70	25	62	68	2	4	24	1.20
38189966--38189990	2	12.5	2	100	0	50	0	48	0	52	1.00
38190758--38190897	71	2.0	72	81	7	169	16	14	17	51	1.77
38197094--38197200	54	2.0	54	88	0	160	27	13	11	48	1.75
38198417--38198492	27	2.8	28	88	6	111	14	23	21	40	1.90
38203700--38203749	23	2.2	23	88	0	73	26	4	32	38	1.75
38204750--38204788	20	1.9	20	89	5	60	46	5	17	30	1.70
38204757--38204826	30	2.3	31	87	7	99	34	10	24	31	1.88
38225590--38225774	79	2.3	81	83	7	227	24	22	27	24	2.00
38225591--38225774	40	4.6	40	82	9	207	25	22	27	24	2.00
38225643--38225807	79	2.1	79	83	6	201	26	21	27	24	1.99
38241846--38241884	10	4.0	10	86	6	53	12	10	2	74	1.17
38241848--38241884	19	1.9	19	94	0	65	13	10	2	72	1.21
38242306--38242344	10	4.0	10	86	6	53	12	10	2	74	1.17
38242308--38242353	10	4.8	10	84	7	51	13	13	2	71	1.23
38242308--38242344	19	1.9	19	94	0	65	13	10	2	72	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38242308--38242353	19	2.4	19	85	7	58	13	13	2	71	1.23
38245078--38245114	16	2.3	16	86	13	58	40	0	0	59	0.97
38266650--38267425	387	2.0	387	99	0	1534	32	14	18	33	1.92
38271906--38271953	24	2.0	24	88	8	71	52	8	12	27	1.67
38272080--38272127	18	2.7	18	81	12	62	31	18	25	25	1.98
38274669--38274696	14	2.0	14	100	0	56	14	42	28	14	1.84
38275006--38275236	97	2.4	96	85	5	297	38	3	19	39	1.67
38275271--38275810	126	4.3	126	94	0	902	32	18	22	26	1.97
38278468--38278523	28	2.0	28	92	0	94	39	14	21	25	1.91
38281358--38281418	11	5.5	11	88	7	97	49	0	26	24	1.51
38282411--38282900	168	2.9	168	99	0	953	35	8	18	37	1.82
38292370--38292610	126	1.9	126	92	2	405	40	3	4	51	1.42
38294381--38295178	398	2.0	398	98	0	1542	29	21	20	27	1.98
38296824--38296869	8	6.0	8	82	7	51	23	36	0	39	1.55
38296828--38296876	23	2.1	23	85	7	64	22	34	0	42	1.54
38296844--38296876	12	2.8	12	86	4	50	21	30	0	48	1.50
38297058--38297097	21	1.9	21	84	0	53	12	15	5	67	1.38
38311779--38311845	20	3.3	20	66	12	55	14	29	17	37	1.91
38311762--38312073	41	7.6	41	89	0	446	19	28	17	34	1.94
38311902--38312051	21	7.3	21	67	13	105	17	31	17	34	1.93
38326857--38326921	29	2.3	28	84	5	85	26	7	18	47	1.75
38328925--38328961	9	4.2	9	89	3	58	13	0	29	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38334453--38334485	16	2.1	16	94	0	57	39	6	30	24	1.79
38334706--38335173	117	4.0	117	98	0	893	52	4	1	41	1.32
38335050--38335122	10	7.9	10	66	17	50	56	1	0	42	1.08
38338405--38338453	18	2.8	18	93	6	84	61	0	0	38	0.96
38342249--38342315	31	2.1	32	86	2	91	16	23	8	50	1.73
38353042--38353104	29	2.1	32	85	8	87	44	0	0	55	0.99
38356511--38356585	23	3.3	23	96	0	132	34	17	17	30	1.93
38358854--38358907	25	2.3	25	81	18	71	55	5	3	35	1.41
38363867--38363895	14	2.1	14	100	0	58	58	20	0	20	1.39
38364053--38364148	33	3.2	33	67	27	102	44	14	9	31	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153