genome.fa.s18.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  106  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32979492--32979612	44	2.7	45	80	2	129	33	18	20	27	1.96
32979508--32979628	44	2.8	45	79	3	122	31	19	22	26	1.98
32981133--32981185	21	2.5	21	77	17	65	33	1	1	62	1.17
32981815--32982005	98	1.9	98	93	0	328	27	10	25	36	1.90
32983177--32983217	21	2.0	20	85	4	55	51	4	2	41	1.36
32996061--32996538	231	2.1	231	97	0	893	34	13	29	22	1.92
32996061--32996612	231	2.4	231	91	1	804	34	13	29	21	1.92
33017073--33017320	125	2.0	126	93	0	426	29	15	22	32	1.95
33020172--33020295	46	2.8	46	91	3	200	28	22	16	33	1.95
33020172--33020480	37	7.8	45	90	7	207	26	20	15	37	1.93
33020258--33020507	37	6.8	37	97	0	446	25	20	14	39	1.90
33024375--33024412	20	1.9	20	84	10	51	55	7	2	34	1.43
33025305--33025348	12	3.8	12	81	3	54	56	0	0	43	0.99
33025417--33025457	11	3.7	11	87	6	57	48	0	29	21	1.50
33027955--33028022	24	2.8	24	86	0	91	50	20	8	20	1.75
33040432--33040499	33	2.1	33	94	0	118	14	26	11	47	1.79
33046507--33046812	90	3.4	90	100	0	612	42	12	6	37	1.70
33049381--33049587	91	2.3	91	94	0	360	46	2	3	47	1.34
33049473--33049664	101	2.0	92	76	15	176	46	3	2	47	1.32
33049381--33049621	47	5.3	46	71	20	168	45	2	3	48	1.34
33049614--33049898	61	4.8	58	67	11	191	44	2	5	48	1.37
33049603--33049898	120	2.5	120	97	1	558	44	2	5	48	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33049724--33049758	18	2.0	17	88	5	52	45	0	0	54	0.99
33049844--33049878	18	2.0	17	88	5	52	45	0	0	54	0.99
33050163--33050229	9	7.4	9	77	9	66	26	10	20	41	1.85
33050163--33050231	27	2.6	27	90	0	102	26	10	20	43	1.83
33052536--33052592	17	3.5	17	66	9	55	49	8	1	40	1.44
33052530--33052599	32	2.4	30	86	13	94	47	7	4	41	1.50
33053643--33053719	14	5.0	15	71	20	52	42	14	9	33	1.77
33053659--33053698	20	2.0	20	90	0	62	50	12	10	27	1.72
33053647--33053713	34	1.9	35	90	3	109	46	13	8	31	1.74
33056944--33057076	73	1.9	71	84	9	184	35	12	2	49	1.53
33057523--33057558	14	2.6	14	90	0	54	33	13	47	5	1.67
33061114--33061196	43	1.9	43	95	0	148	42	13	9	34	1.77
33061445--33061496	24	2.1	24	85	3	68	36	25	26	11	1.90
33064458--33064508	22	2.3	23	83	10	61	35	1	5	56	1.35
33065147--33065194	24	2.0	25	88	12	73	41	14	8	35	1.76
33070365--33070394	15	2.0	15	93	0	51	53	16	13	16	1.73
33072252--33072293	18	2.5	16	82	17	50	42	4	2	50	1.36
33073778--33073826	14	3.3	15	78	18	50	61	2	0	36	1.08
33074486--33074529	17	2.8	16	82	6	54	65	2	0	31	1.05
33074477--33074525	23	2.1	24	85	11	66	65	2	0	32	1.04
33074477--33074523	24	2.0	24	87	8	69	65	2	0	31	1.04
33077297--33077519	42	5.2	42	87	3	293	30	20	22	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33077305--33077516	86	2.5	86	89	2	320	32	19	21	25	1.97
33077510--33077549	16	2.7	14	82	14	53	15	20	30	35	1.93
33077521--33077553	16	2.1	16	100	0	66	12	24	30	33	1.91
33077544--33077640	42	2.3	43	85	7	135	27	21	26	23	1.99
33083778--33084017	41	5.9	40	75	4	221	35	23	24	17	1.95
33083817--33084016	82	2.4	82	88	0	292	35	24	24	16	1.95
33083778--33084015	123	1.9	123	83	1	307	35	23	23	16	1.95
33084767--33084979	114	1.9	113	85	4	295	23	23	26	25	2.00
33084875--33085040	73	2.3	74	93	3	282	22	24	25	26	2.00
33087328--33087457	66	2.0	66	85	0	179	44	17	21	16	1.86
33087828--33087986	43	3.7	42	81	4	176	32	18	26	22	1.97
33087828--33087986	86	1.9	85	84	9	216	32	18	26	22	1.97
33088507--33088586	29	2.8	29	79	7	81	58	0	5	36	1.20
33088580--33088712	9	14.0	9	69	17	56	60	0	8	30	1.31
33088890--33088952	19	3.2	20	70	20	62	31	1	3	63	1.19
33088890--33088999	10	11.1	10	69	14	59	30	1	4	63	1.24
33088890--33089054	9	17.2	9	67	15	64	30	2	4	63	1.27
33096034--33096065	16	2.1	16	94	5	57	6	12	0	81	0.87
33099209--33099251	19	2.3	18	84	15	52	20	23	13	41	1.88
33101077--33101126	9	5.6	9	86	9	75	78	10	0	12	0.98
33101090--33101126	17	2.2	17	100	0	74	78	10	0	10	0.97
33102090--33102136	21	2.2	21	92	0	76	27	10	36	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33103190--33103773	46	12.7	46	92	0	943	27	16	27	28	1.97
33103785--33104753	132	7.3	132	93	0	1497	32	18	22	26	1.97
33104282--33104622	44	7.8	44	66	12	162	31	19	24	25	1.98
33104663--33105638	488	2.0	488	98	0	1907	34	22	20	21	1.97
33106020--33106067	23	2.1	23	96	0	87	8	33	43	14	1.75
33111639--33111685	24	2.0	24	87	8	69	38	36	6	19	1.77
33117883--33117969	25	3.5	25	90	0	129	32	24	20	22	1.98
33117883--33118008	25	5.0	25	83	0	108	34	20	21	23	1.97
33120898--33120944	17	2.7	18	76	6	51	53	2	4	40	1.32
33121752--33122212	140	3.3	139	83	3	531	34	20	9	36	1.84
33122288--33122332	22	2.1	22	87	4	65	66	4	0	28	1.11
33126047--33126272	77	2.8	77	82	8	224	47	13	10	28	1.76
33126127--33126570	81	5.3	81	83	4	460	45	12	12	28	1.79
33126436--33126698	88	3.0	87	78	9	275	44	10	12	32	1.77
33126789--33126839	22	2.3	22	80	6	59	66	1	0	31	1.03
33127281--33127321	20	2.0	20	85	0	55	51	7	9	31	1.62
33129897--33129995	25	4.0	25	81	0	108	21	29	15	34	1.94
33147205--33147398	69	2.8	69	80	5	205	33	16	20	29	1.94
33154315--33154339	13	1.9	13	100	0	50	40	16	16	28	1.89
33155281--33155430	82	1.9	80	81	2	183	34	19	10	36	1.85
33157817--33157907	25	3.8	25	81	8	107	17	21	19	40	1.91
33162403--33162428	6	4.3	6	100	0	52	65	19	15	0	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33163468--33163500	16	2.0	17	94	5	59	24	0	3	72	0.98
33171780--33171828	6	7.6	7	82	17	54	71	0	2	26	0.97
33171779--33171828	20	2.6	20	90	6	77	70	0	4	26	1.05
33171781--33171829	12	3.9	12	87	10	71	69	0	2	28	1.00
33175296--33175615	174	1.8	179	85	3	461	22	15	15	45	1.84
33179377--33179474	48	2.0	48	100	0	196	29	12	14	43	1.81
33200319--33200353	18	1.9	18	100	0	70	34	0	25	40	1.56
33207990--33208026	11	2.9	13	88	11	51	64	0	0	35	0.94
33208488--33208603	61	2.0	61	86	8	168	41	4	4	50	1.42
33209039--33209086	17	2.9	17	90	3	71	27	0	18	54	1.44
33210312--33210490	46	3.9	46	86	1	216	37	10	24	27	1.87
33210312--33210489	92	1.9	92	87	0	257	38	9	24	28	1.86
33217707--33217746	3	13.3	3	100	0	80	67	0	32	0	0.91
33222994--33223053	30	2.0	30	96	0	111	36	28	10	25	1.88
33224202--33224386	48	3.9	48	86	0	235	22	29	21	27	1.99
33231154--33231180	3	9.0	3	100	0	54	33	0	0	66	0.92
33231286--33231320	14	2.5	14	90	0	52	48	0	14	37	1.44
33231492--33231560	21	3.5	20	76	9	61	34	7	4	53	1.48
33233385--33233481	49	2.0	49	91	0	158	43	7	25	23	1.79
33256724--33256775	21	2.4	21	83	3	59	30	25	28	15	1.96
33256869--33256923	21	2.6	21	78	18	60	20	23	32	23	1.98
33258182--33258558	205	1.8	204	94	0	673	35	21	5	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33259319--33259372	22	2.3	24	84	9	76	37	11	1	50	1.49
33263546--33263594	20	2.5	19	87	9	64	32	8	16	42	1.77
33271780--33271872	47	2.0	47	97	0	177	26	32	5	35	1.79
33280659--33280700	20	2.0	20	86	4	57	52	7	4	35	1.50
33285429--33285465	9	4.1	9	85	0	56	27	10	18	43	1.83
33304180--33304252	29	2.6	28	75	10	69	23	19	21	35	1.96
33304448--33304563	53	2.2	53	84	3	153	25	25	13	35	1.93
33305886--33305942	20	2.8	20	76	10	55	70	3	3	22	1.18
33306167--33306204	16	2.5	15	84	16	51	47	0	2	50	1.15
33306339--33306372	17	2.0	17	88	0	50	50	2	0	47	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153