genome.fa.s18.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  122  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38365417--38365443	14	1.9	14	100	0	54	51	3	7	37	1.48
38372563--38373168	303	2.0	303	98	0	1176	27	17	19	36	1.93
38381520--38381563	23	1.9	22	82	17	54	36	25	0	38	1.56
38381608--38381701	45	2.1	45	93	0	161	30	24	19	25	1.98
38381698--38381893	51	3.9	50	82	4	250	30	29	17	22	1.97
38381705--38381889	101	1.8	101	92	3	318	30	28	17	22	1.97
38383623--38383656	16	2.0	18	88	11	54	76	8	5	8	1.15
38392785--38392888	50	2.1	50	94	1	183	40	15	2	41	1.62
38399856--38400378	182	2.9	181	94	0	893	34	16	14	33	1.90
38416218--38416287	32	2.2	32	97	2	133	14	14	25	45	1.82
38418921--38419018	48	2.0	48	98	0	187	17	17	13	52	1.75
38427099--38427266	75	2.2	75	87	2	239	22	19	22	35	1.96
38427099--38427308	75	2.8	75	84	3	210	21	20	21	36	1.95
38434728--38434764	17	2.1	18	90	5	58	35	0	16	48	1.46
38439848--38439902	11	4.9	11	77	18	60	25	29	1	43	1.65
38441904--38441943	21	1.9	21	85	10	55	35	35	22	7	1.82
38442239--38442360	21	5.8	21	82	1	145	47	24	1	26	1.61
38442239--38442354	43	2.7	43	83	1	153	47	25	1	25	1.62
38445457--38446020	126	4.5	126	89	1	789	30	23	16	30	1.96
38447240--38447271	16	2.0	16	93	0	55	6	46	6	40	1.54
38448422--38448507	25	3.4	25	83	0	118	37	22	15	25	1.93
38450074--38450173	50	2.0	50	96	0	182	37	13	11	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38473155--38473231	24	3.2	24	83	7	86	38	6	40	14	1.72
38473683--38473817	40	3.4	41	78	6	145	40	22	16	20	1.91
38473855--38474009	41	3.8	41	80	5	145	24	19	27	29	1.98
38474296--38474329	15	2.3	15	90	5	52	20	0	35	44	1.52
38474316--38474356	21	2.0	20	85	4	55	19	0	41	39	1.52
38474324--38474381	15	3.9	15	81	2	73	20	0	44	34	1.52
38474582--38474613	15	2.1	15	94	0	55	25	0	34	40	1.56
38474591--38474628	14	2.7	15	84	12	53	26	2	28	42	1.69
38474575--38474664	21	4.2	22	70	8	60	23	1	36	38	1.62
38474644--38474672	15	1.9	15	100	0	58	13	0	51	34	1.42
38474630--38474693	21	3.0	22	79	4	60	20	0	43	35	1.52
38476544--38476582	12	3.2	12	96	0	69	20	10	30	38	1.86
38477187--38477225	20	2.0	20	94	0	69	10	38	10	41	1.73
38477273--38477303	10	3.1	10	95	0	53	16	19	12	51	1.76
38479164--38479370	43	4.9	42	82	5	249	19	18	31	30	1.96
38479165--38479370	85	2.4	85	84	7	267	18	18	31	30	1.96
38481193--38481281	29	3.3	27	78	13	85	13	8	32	44	1.75
38490123--38490644	261	2.0	261	100	0	1044	29	17	21	32	1.96
38497453--38497499	24	2.0	24	87	8	69	38	6	42	12	1.69
38499606--38499672	29	2.4	28	76	14	75	14	10	29	44	1.79
38500974--38501008	16	2.1	17	89	5	54	11	51	0	37	1.38
38506228--38506303	23	3.3	23	88	0	125	30	25	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38506390--38506417	8	3.5	8	100	0	56	35	28	10	25	1.89
38506537--38506575	18	2.2	17	86	13	53	46	20	0	33	1.51
38517771--38517809	12	3.2	12	85	0	51	20	23	5	51	1.67
38518058--38518246	50	3.7	50	82	4	189	22	28	21	27	1.99
38518592--38518649	30	1.9	30	82	6	73	29	20	10	39	1.86
38519125--38519161	20	2.0	19	85	15	51	40	21	0	37	1.54
38523197--38523243	19	2.5	18	80	16	51	51	0	0	48	1.00
38535819--38535872	22	2.4	22	84	3	72	44	22	12	20	1.85
38537557--38537607	24	2.1	24	100	0	102	31	21	0	47	1.51
38543275--38543316	15	2.7	16	88	7	68	66	2	0	30	1.04
38547938--38548076	54	2.6	54	83	4	183	24	35	14	25	1.93
38549198--38549234	13	2.8	13	84	15	58	2	18	0	78	0.87
38553087--38553116	14	2.1	14	100	0	60	30	43	6	20	1.77
38554895--38555000	25	4.2	25	70	9	81	22	24	16	35	1.95
38554899--38555038	75	1.9	75	83	3	183	23	22	19	35	1.96
38562152--38562348	48	4.1	48	87	0	277	26	19	29	24	1.98
38566104--38566190	24	3.6	24	88	1	129	33	24	14	27	1.95
38568391--38568416	13	2.0	13	100	0	52	53	0	0	46	1.00
38570542--38570576	18	1.9	18	88	11	54	28	11	2	57	1.48
38570617--38570641	10	2.5	10	100	0	50	52	16	0	32	1.44
38571428--38571460	6	5.7	6	96	3	59	51	0	0	48	1.00
38571394--38571448	25	2.3	23	81	12	65	40	0	1	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38572167--38572218	10	5.1	10	79	4	59	30	0	0	69	0.89
38572155--38572218	31	2.1	31	100	0	128	34	0	0	65	0.93
38573300--38573324	7	3.6	7	100	0	50	28	0	12	60	1.32
38573975--38574009	18	1.9	18	88	0	52	25	34	8	31	1.86
38574125--38574184	30	2.0	30	96	0	111	11	33	28	26	1.91
38574443--38574511	25	2.7	25	81	2	84	47	2	8	40	1.49
38574514--38575014	29	17.8	29	83	8	598	44	27	0	27	1.59
38574514--38575061	58	9.9	58	86	9	701	44	27	0	27	1.58
38574514--38575061	87	6.6	86	82	12	686	44	27	0	27	1.58
38574648--38574672	6	4.2	6	100	0	50	32	52	0	16	1.44
38574663--38574760	18	5.8	18	73	17	84	47	26	0	25	1.52
38574507--38575061	173	3.4	163	83	11	718	45	27	0	27	1.58
38574991--38575079	18	5.3	18	71	17	84	48	23	0	28	1.51
38575109--38575143	18	1.9	18	94	0	61	37	8	2	51	1.47
38575165--38575191	10	2.7	10	100	0	54	40	7	0	51	1.30
38575230--38575254	10	2.5	10	100	0	50	44	8	0	48	1.32
38575109--38575254	65	2.2	66	86	6	199	39	8	4	47	1.54
38578367--38578832	122	3.8	122	93	1	754	33	19	16	30	1.94
38582188--38582221	14	2.3	15	90	5	52	55	11	20	11	1.67
38582554--38582600	24	2.0	23	84	12	60	31	0	2	65	1.04
38588246--38588320	21	3.4	21	87	5	87	53	12	21	13	1.71
38591470--38591577	54	2.0	54	87	0	153	31	12	27	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38593275--38593331	24	2.4	24	96	0	105	19	24	17	38	1.93
38594721--38594800	20	4.0	20	83	0	97	43	22	26	7	1.79
38597400--38597511	50	2.2	52	88	3	174	38	14	15	32	1.87
38602781--38603065	50	5.7	50	87	2	396	28	21	30	20	1.98
38602782--38603065	150	1.9	148	89	3	444	28	21	30	20	1.98
38611329--38611372	23	1.9	23	90	0	70	43	4	9	43	1.56
38611431--38611469	19	2.2	18	86	9	53	74	2	12	10	1.17
38634894--38634926	18	1.9	18	88	11	52	36	0	6	57	1.23
38636778--38636846	24	2.9	23	80	10	77	55	10	2	31	1.48
38638938--38639200	120	2.2	119	82	4	307	26	28	20	23	1.99
38638938--38639147	40	5.3	40	92	0	305	26	29	20	23	1.99
38638941--38639200	80	3.3	80	85	3	258	26	28	21	23	1.99
38639132--38639209	40	1.9	41	82	10	97	26	28	21	23	1.99
38647412--38647436	13	1.9	13	100	0	50	80	0	20	0	0.72
38648148--38648310	88	1.9	88	89	0	254	26	25	22	25	2.00
38648155--38648297	44	3.2	42	68	15	101	25	25	20	27	1.99
38648330--38649498	44	26.7	44	85	1	1510	21	27	20	30	1.98
38651923--38651991	24	2.8	25	77	18	83	52	10	4	33	1.55
38652692--38652716	13	1.9	13	100	0	50	80	0	20	0	0.72
38656443--38656790	40	8.7	40	97	0	642	30	20	27	22	1.98
38664527--38664736	40	5.3	39	87	5	233	24	21	28	25	1.99
38664474--38664736	120	2.2	120	81	4	300	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38664527--38664771	80	3.1	80	81	3	228	25	21	28	24	1.99
38669805--38670002	40	4.9	40	81	2	209	35	23	19	21	1.95
38669838--38669947	20	5.5	20	70	0	76	34	24	19	21	1.96
38669806--38669960	80	1.9	79	89	1	238	36	23	18	20	1.95
38682917--38682965	24	2.0	24	92	0	80	24	20	20	34	1.96
38689665--38689864	67	2.9	68	80	3	186	32	22	24	21	1.98
38689665--38689883	69	3.2	69	80	2	208	31	22	24	21	1.98
38689742--38689967	69	3.3	69	78	1	193	30	24	24	20	1.99
38689834--38690138	69	4.4	69	75	3	211	32	24	21	20	1.98
38704669--38704844	56	3.4	49	81	8	140	24	25	20	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153