genome.fa.s18.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  19  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6400564--6400671	46	2.3	46	80	3	128	30	23	21	25	1.99
6400691--6401140	44	9.8	45	69	17	228	29	21	17	31	1.96
6400660--6401067	98	4.3	95	64	17	234	29	20	17	32	1.96
6400660--6401111	142	3.2	142	100	0	904	28	21	17	32	1.96
6401018--6401715	44	15.8	44	73	10	471	27	22	19	30	1.98
6401073--6401544	90	5.2	90	97	0	847	27	22	20	29	1.98
6410703--6410762	30	2.0	30	90	0	93	23	31	13	31	1.93
6416279--6416323	23	2.0	23	86	0	63	35	24	24	15	1.94
6416368--6416422	26	2.1	26	82	0	65	43	16	14	25	1.86
6416488--6416610	64	1.9	64	91	0	201	35	23	20	20	1.96
6425084--6425129	16	2.9	16	78	12	51	45	0	2	52	1.13
6425058--6425607	120	4.6	120	95	0	956	42	2	5	49	1.38
6425444--6425490	16	3.0	16	78	12	53	46	0	2	51	1.13
6425564--6425605	15	2.7	16	82	14	52	45	0	2	52	1.13
6425555--6425596	15	2.9	15	82	10	52	47	0	0	52	1.00
6425821--6425872	16	3.2	16	91	0	86	34	36	0	28	1.58
6435240--6435269	14	2.1	14	93	0	51	36	3	13	46	1.60
6448126--6448209	26	3.2	26	81	8	100	60	15	1	22	1.41
6448470--6448509	14	2.9	13	85	10	53	37	2	12	47	1.55
6448478--6448544	34	1.9	35	93	3	118	32	5	11	49	1.64
6464335--6464382	24	2.0	24	87	0	69	2	29	6	62	1.31
6475093--6475156	30	2.1	30	97	0	119	31	28	10	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6486728--6486814	31	2.9	29	71	18	72	28	14	4	51	1.62
6486726--6486821	28	3.2	28	71	16	77	29	14	4	52	1.60
6498325--6498383	29	2.0	30	90	3	93	54	13	3	28	1.55
6505727--6505787	19	3.1	19	81	9	70	50	0	1	47	1.10
6508574--6508651	23	3.2	25	85	7	97	47	16	33	2	1.61
6509499--6509543	24	1.9	24	90	4	74	24	2	4	68	1.19
6509478--6509545	30	2.2	30	87	7	93	25	1	4	69	1.16
6514325--6514383	30	1.9	31	89	3	93	52	1	5	40	1.33
6519456--6519612	71	2.2	71	81	4	192	42	14	10	32	1.79
6520060--6520202	41	3.5	41	85	0	196	32	23	19	24	1.98
6522501--6522531	11	2.8	11	90	0	53	32	0	0	67	0.91
6525879--6525922	24	1.9	24	90	9	74	36	0	2	61	1.09
6526052--6526079	9	3.1	9	100	0	56	57	10	0	32	1.33
6525955--6526129	68	2.6	68	98	0	332	45	9	5	39	1.60
6526136--6526177	16	2.6	16	92	0	66	42	7	2	47	1.43
6528373--6528424	24	2.2	24	83	12	65	71	7	7	13	1.31
6535971--6536031	29	2.1	28	87	3	86	36	1	4	57	1.30
6536624--6536692	27	2.6	27	90	0	111	31	23	27	17	1.97
6536701--6537038	19	17.3	19	70	21	170	29	0	14	55	1.44
6536704--6536977	101	2.6	101	89	5	395	29	0	13	56	1.43
6536906--6536982	27	3.0	27	85	11	117	29	0	15	54	1.42
6536805--6537037	42	5.5	42	74	15	212	30	0	14	54	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6537031--6537152	60	2.0	60	88	3	183	31	0	13	54	1.45
6537270--6537306	16	2.4	16	90	4	58	32	2	5	59	1.34
6543747--6543786	15	2.5	16	92	8	64	32	0	0	67	0.91
6543785--6543832	24	1.9	26	87	8	73	56	0	0	43	0.99
6544675--6544701	8	3.4	8	100	0	54	44	0	0	55	0.99
6547924--6547955	15	2.1	15	94	0	55	21	12	0	65	1.25
6559219--6559431	103	2.1	104	90	2	340	42	14	11	31	1.81
6560614--6560686	37	2.0	37	94	0	128	31	5	12	50	1.62
6567770--6567795	12	2.2	12	100	0	52	61	0	0	38	0.96
6582887--6582923	18	2.1	18	89	0	56	0	13	2	83	0.74
6585963--6585998	12	3.1	11	85	14	54	0	13	0	86	0.58
6595073--6595133	32	1.9	32	93	0	104	31	1	36	31	1.68
6595109--6595158	24	2.1	24	88	0	73	30	2	30	38	1.69
6599174--6599228	23	2.4	23	93	0	92	27	14	14	43	1.84
6607510--6607612	44	2.3	45	84	3	127	30	21	13	34	1.92
6607532--6607617	46	1.9	44	90	4	136	29	23	13	33	1.93
6607957--6608014	30	1.9	30	89	0	89	31	24	3	41	1.71
6608584--6608617	9	3.9	9	84	7	52	2	17	0	79	0.86
6608584--6608617	17	2.0	17	94	0	59	2	17	0	79	0.86
6608626--6608698	5	14.6	5	76	20	64	54	4	1	39	1.28
6608627--6608669	19	2.3	19	92	8	70	55	0	2	41	1.12
6608633--6608697	24	2.7	24	80	9	69	56	4	1	36	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6609142--6609179	20	2.0	20	89	5	60	57	5	0	36	1.21
6611182--6611254	34	2.1	35	80	7	87	35	1	1	61	1.13
6611198--6611244	25	1.9	24	83	12	60	29	0	2	68	1.02
6617643--6617730	44	2.0	43	93	2	149	34	7	13	44	1.73
6625572--6625618	23	2.0	23	87	0	67	63	2	0	34	1.06
6625550--6625714	52	3.1	52	74	14	156	58	3	1	36	1.24
6625552--6625712	54	3.0	52	73	17	148	57	3	1	37	1.25
6630649--6630917	31	8.7	31	86	1	362	31	9	17	42	1.80
6631035--6631182	43	3.4	43	89	4	217	27	17	23	31	1.97
6647636--6647712	38	2.0	38	89	0	118	41	14	16	27	1.87
6651523--6651668	37	4.0	37	93	1	242	24	21	16	36	1.94
6651632--6651900	46	5.6	46	84	10	340	28	22	14	34	1.93
6651675--6651894	52	4.3	52	85	8	299	27	22	14	35	1.93
6651632--6651900	98	2.7	98	93	0	457	28	22	14	34	1.93
6655026--6655171	49	3.0	49	90	1	229	32	29	13	23	1.93
6656424--6656569	37	4.0	37	93	1	242	24	21	16	36	1.94
6656533--6656801	46	5.6	46	84	10	340	28	22	14	34	1.93
6656576--6656795	52	4.3	52	85	8	299	27	22	14	35	1.93
6656533--6656801	98	2.7	98	93	0	457	28	22	14	34	1.93
6679497--6679555	31	1.9	31	82	6	75	33	11	11	42	1.78
6679585--6679806	112	2.0	111	93	0	381	24	13	11	50	1.74
6684364--6684411	20	2.4	20	78	0	60	33	0	45	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6685010--6685046	12	3.0	12	88	4	56	72	10	2	13	1.21
6685034--6685084	19	2.6	20	78	6	59	60	7	1	29	1.36
6703668--6703736	31	2.2	31	81	0	84	34	8	10	46	1.69
6711624--6711727	29	3.7	29	65	14	90	36	13	12	37	1.83
6713470--6713525	22	2.5	23	82	2	69	51	1	1	44	1.22
6713501--6713540	16	2.5	16	91	0	62	50	2	5	42	1.37
6713613--6713665	9	6.1	9	84	8	65	33	0	13	52	1.40
6713610--6713666	25	2.3	25	87	0	78	35	0	12	52	1.39
6713657--6713788	68	1.9	68	93	0	228	38	5	9	46	1.60
6717733--6717767	17	2.1	16	89	5	52	40	0	2	57	1.14
6719558--6719627	31	2.3	31	79	0	77	37	7	10	45	1.65
6719873--6719940	31	2.2	30	85	12	93	48	8	7	35	1.62
6728007--6728033	4	6.8	4	100	0	54	25	0	22	51	1.48
6730247--6730292	19	2.3	20	79	17	51	47	0	0	52	1.00
6731558--6731609	25	2.1	25	100	0	104	50	15	11	23	1.76
6731619--6731709	41	2.2	42	84	5	123	38	13	4	43	1.64
6732781--6732857	31	2.5	31	82	4	102	38	11	6	42	1.67
6734106--6734156	24	2.2	22	82	6	57	15	13	3	66	1.39
6735139--6735167	13	2.2	13	100	0	58	58	0	0	41	0.98
6742176--6742203	6	4.7	6	100	0	56	82	0	0	17	0.68
6742082--6742195	42	2.8	40	73	15	115	58	2	5	33	1.34
6743736--6743772	14	2.4	17	82	17	53	27	5	8	59	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6743730--6743772	14	2.8	15	77	19	52	25	6	6	60	1.48
6751322--6751844	173	3.0	174	97	0	976	28	19	13	38	1.90
6756076--6756145	36	1.9	36	100	0	140	38	21	8	31	1.83
6756077--6756137	21	3.2	21	60	26	53	39	22	8	29	1.83
6762638--6762702	19	3.4	20	72	10	55	30	38	10	20	1.86
6771630--6771872	125	1.9	125	88	3	364	29	14	23	31	1.95
6772891--6773060	23	6.4	23	72	26	124	26	0	25	47	1.52
6772901--6773173	57	4.7	57	88	10	405	28	0	24	47	1.52
6772873--6773154	29	9.8	29	80	11	314	27	0	24	48	1.52
6773109--6773183	23	3.2	23	79	9	80	28	0	25	46	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153