genome.fa.s18.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  144  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45032147--45032208	19	3.0	21	77	15	67	38	1	0	59	1.07
45032436--45032470	16	2.2	16	89	0	52	65	0	34	0	0.93
45033376--45033434	27	2.2	28	78	9	68	23	0	28	47	1.52
45036807--45036850	23	1.9	22	82	17	54	36	25	0	38	1.56
45055674--45055802	44	2.9	45	73	7	122	32	23	24	20	1.98
45055793--45056097	142	2.2	142	90	0	477	32	19	21	26	1.97
45056555--45056595	15	2.7	15	96	0	73	41	46	4	7	1.53
45057519--45057596	39	2.0	39	94	0	138	35	6	14	43	1.71
45058153--45058281	44	2.9	45	73	7	122	32	23	24	20	1.98
45058292--45058495	44	4.4	44	65	16	124	31	20	21	27	1.98
45058272--45058576	142	2.2	142	91	0	486	32	19	21	26	1.97
45059034--45059074	15	2.7	15	96	0	73	41	46	4	7	1.53
45059998--45060075	39	2.0	39	94	0	138	35	6	14	43	1.71
45060504--45060540	19	1.9	19	89	10	58	45	5	5	43	1.49
45061604--45061948	51	6.8	49	80	5	359	29	24	15	30	1.96
45061605--45061948	102	3.4	102	88	2	480	29	25	15	29	1.96
45068658--45068702	13	3.4	14	81	6	58	22	17	15	44	1.86
45074625--45074779	27	5.7	27	81	1	159	43	23	15	17	1.87
45074625--45074777	81	1.9	81	84	2	209	44	22	15	17	1.86
45076812--45076858	24	1.9	24	86	4	67	36	0	38	25	1.56
45077519--45077645	54	2.4	54	84	7	152	44	20	18	16	1.86
45077519--45077647	27	4.8	26	80	3	132	45	20	17	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45077692--45077733	16	2.7	16	96	3	77	28	11	14	45	1.80
45077999--45078064	28	2.4	29	90	7	102	25	24	24	25	2.00
45077996--45078069	28	2.4	31	76	21	84	24	22	24	28	2.00
45079648--45079694	24	1.9	24	86	4	67	36	0	38	25	1.56
45080320--45080378	27	2.2	27	90	0	91	42	20	18	18	1.90
45080720--45080781	28	2.3	27	91	2	97	20	24	24	30	1.99
45083044--45083156	27	4.2	27	82	0	136	38	17	21	22	1.93
45083263--45083314	27	2.0	26	84	3	68	19	15	21	44	1.87
45086463--45086491	8	3.6	8	100	0	58	24	0	0	75	0.80
45095163--45095207	20	2.3	19	84	3	54	77	4	4	13	1.07
45095163--45095207	19	2.4	19	85	7	56	77	4	4	13	1.07
45095082--45095317	110	2.1	110	100	0	472	45	5	8	40	1.58
45095273--45095318	19	2.4	19	85	7	58	78	4	4	13	1.05
45095273--45095319	20	2.4	19	82	3	58	78	4	4	12	1.04
45095499--45095721	113	2.0	110	89	4	340	39	19	20	20	1.93
45096343--45096377	18	1.9	18	88	11	54	57	0	20	22	1.41
45100526--45100614	28	3.2	28	90	1	135	33	22	21	22	1.97
45100977--45101388	27	15.3	27	80	6	363	19	17	20	42	1.89
45100979--45101388	54	7.6	54	81	2	434	19	17	20	42	1.89
45100980--45101388	81	5.1	81	81	5	461	19	17	20	42	1.89
45107895--45107961	34	2.0	34	96	0	125	41	29	2	25	1.70
45115225--45115551	50	6.6	50	83	3	351	27	21	28	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45115272--45115551	150	1.9	148	86	3	400	27	21	28	22	1.99
45116454--45116501	25	1.9	25	91	0	78	25	22	14	37	1.92
45119346--45119427	32	2.6	32	90	3	121	20	19	20	39	1.93
45125441--45125649	27	7.7	27	84	1	213	41	19	16	22	1.90
45125466--45125836	27	13.7	27	77	5	113	40	19	16	23	1.91
45125441--45125674	54	4.3	53	79	4	182	40	18	16	23	1.91
45125504--45125740	81	2.9	80	80	6	205	41	17	16	24	1.90
45125693--45125831	55	2.6	55	79	6	133	41	21	16	20	1.91
45125852--45125921	11	6.0	11	69	12	50	18	5	25	50	1.69
45125844--45125928	24	3.5	24	90	0	116	22	7	23	47	1.76
45125997--45126062	27	2.5	26	82	9	71	19	24	24	31	1.98
45126100--45126236	32	4.3	32	90	0	195	19	21	21	37	1.94
45137854--45137956	53	1.9	53	94	3	181	19	22	28	30	1.98
45140974--45141027	18	3.1	18	71	17	51	53	12	0	33	1.39
45142549--45142590	18	2.3	18	84	8	59	45	19	0	35	1.50
45147624--45147738	27	4.3	27	82	0	140	23	20	15	40	1.90
45147624--45147874	54	4.4	54	76	13	218	21	19	18	40	1.92
45147737--45147874	27	5.1	27	90	1	188	19	19	20	40	1.92
45147678--45147803	65	1.9	65	90	0	198	22	19	15	42	1.88
45147652--45147821	92	1.8	92	87	2	252	22	19	16	41	1.90
45147621--45147848	119	1.9	119	90	0	366	21	20	17	39	1.92
45164561--45164597	19	2.0	18	89	5	56	35	8	0	56	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45166798--45166827	15	2.0	15	100	0	60	53	20	6	20	1.67
45168780--45168814	10	3.5	10	88	0	52	20	8	0	71	1.11
45168780--45168839	25	2.4	26	83	5	70	23	6	1	68	1.22
45172343--45172439	43	2.3	43	81	3	115	26	26	16	29	1.97
45178140--45178319	50	3.6	50	78	2	157	29	21	26	22	1.99
45183061--45183233	27	6.4	27	85	3	215	42	19	17	19	1.89
45183061--45183233	80	2.1	81	88	5	253	42	19	17	19	1.89
45183465--45183709	58	4.2	58	99	0	483	9	13	42	34	1.77
45183737--45183794	28	2.1	28	86	0	80	27	22	24	25	2.00
45187550--45187593	22	2.0	22	91	4	72	40	13	4	40	1.65
45188181--45188231	13	3.9	13	94	0	84	39	25	11	23	1.89
45191246--45191292	24	2.0	24	100	0	94	25	23	25	25	2.00
45191796--45191854	28	2.0	31	83	9	79	44	0	5	50	1.24
45193551--45193771	41	5.4	41	92	1	372	29	21	28	20	1.98
45196938--45197135	50	3.9	51	78	9	163	26	20	29	23	1.99
45197001--45197186	50	3.8	49	79	5	153	26	22	28	22	1.99
45197388--45197426	20	2.0	20	94	0	69	58	2	23	15	1.49
45202255--45202670	76	5.5	76	100	0	832	21	19	25	33	1.97
45202571--45202873	102	3.0	103	86	1	412	20	20	26	32	1.97
45208526--45208567	19	2.2	20	80	16	54	28	7	0	64	1.20
45213478--45213535	28	2.1	28	83	0	71	43	15	13	27	1.85
45218350--45218534	59	3.2	59	82	4	223	25	27	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45218427--45218523	29	3.2	31	67	11	76	24	30	10	34	1.89
45218662--45218768	49	2.1	50	86	5	153	27	23	16	32	1.96
45219648--45219690	22	2.0	22	81	9	52	32	32	9	25	1.88
45221333--45221384	10	5.0	10	80	17	52	32	1	5	59	1.32
45222674--45222774	48	2.1	48	98	1	195	40	5	19	33	1.76
45235656--45235833	27	6.6	27	84	3	205	29	28	15	26	1.96
45235677--45235832	82	1.9	81	88	3	233	29	28	15	26	1.96
45239917--45239978	14	4.4	14	74	8	54	40	11	12	35	1.80
45244275--45244348	22	3.4	22	65	26	57	29	9	17	43	1.81
45244259--45244369	44	2.6	43	88	2	168	28	9	17	44	1.80
45252327--45252370	21	2.0	22	82	4	54	45	20	15	18	1.85
45257926--45257958	6	5.7	6	89	7	50	18	18	9	54	1.69
45259844--45260819	488	2.0	488	98	0	1907	33	13	20	33	1.91
45262162--45262504	169	2.0	170	98	0	670	30	21	12	35	1.91
45277002--45277084	20	4.2	19	67	20	53	16	34	15	32	1.91
45282007--45282040	13	2.6	13	86	13	52	67	0	2	29	1.05
45284355--45284426	36	1.9	39	86	8	105	56	0	6	36	1.26
45284555--45284588	16	2.1	16	88	0	50	26	0	2	70	1.01
45285723--45285802	42	1.9	42	89	0	124	52	8	1	37	1.41
45290794--45290822	13	2.1	14	93	6	51	31	20	20	27	1.98
45294491--45294531	16	2.6	16	96	0	73	46	2	4	46	1.37
45297636--45297860	62	3.5	62	75	17	253	40	6	4	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45297553--45297895	131	2.6	131	94	1	593	40	5	4	49	1.47
45301387--45301618	56	4.1	56	99	0	455	45	9	22	22	1.80
45302748--45302932	79	2.3	81	84	7	236	24	22	27	25	2.00
45302749--45302932	40	4.6	40	82	9	207	24	22	27	25	2.00
45302801--45302965	79	2.1	79	83	6	201	26	20	27	26	1.99
45307899--45307929	15	2.1	15	100	0	62	35	25	0	38	1.56
45310556--45310840	86	3.3	85	76	5	261	21	16	20	41	1.91
45311572--45311609	19	2.1	19	85	9	53	28	0	21	50	1.49
45312522--45312556	18	2.1	16	89	10	52	28	0	20	51	1.47
45317805--45317843	16	2.4	17	86	8	62	58	15	10	15	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153