genome.fa.s18.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  93  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29281382--29281561	40	4.8	36	64	16	87	25	22	17	35	1.95
29281382--29281561	76	2.4	76	81	3	202	25	22	17	35	1.95
29288357--29288475	40	3.1	40	72	18	124	25	18	17	38	1.92
29288350--29288465	36	3.0	39	71	19	107	25	18	18	36	1.95
29288350--29288548	76	2.6	76	82	0	218	27	18	18	36	1.94
29288449--29288616	76	2.2	75	80	6	187	26	21	17	33	1.96
29290931--29291092	63	2.6	62	84	2	180	26	25	17	30	1.98
29297282--29297339	21	2.8	21	76	7	64	63	5	1	29	1.25
29299409--29299463	20	2.8	20	76	15	62	70	5	0	23	1.07
29300539--29300597	31	1.9	31	92	0	100	28	23	1	45	1.63
29305610--29305671	31	2.0	31	83	0	79	27	20	3	48	1.65
29308517--29308578	30	2.1	30	84	6	81	50	11	8	30	1.67
29317285--29317389	54	1.9	54	88	0	156	23	23	19	33	1.97
29325689--29325788	49	2.0	49	94	0	173	48	9	19	24	1.77
29330978--29331015	19	2.1	18	95	5	67	34	15	5	44	1.69
29333927--29334058	54	2.4	54	84	2	158	18	30	23	27	1.98
29334316--29334358	18	2.3	18	84	11	52	51	27	0	20	1.48
29358652--29358710	30	2.0	30	83	6	75	47	11	6	33	1.67
29366091--29366134	22	2.0	22	95	0	79	63	2	0	34	1.07
29368460--29368570	54	2.1	54	86	3	152	25	27	20	26	1.99
29368460--29368590	54	2.4	54	83	1	145	24	27	19	29	1.98
29374094--29374490	102	3.9	102	97	0	724	44	11	8	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29375163--29375226	23	2.7	23	85	7	85	62	12	3	21	1.43
29381657--29381750	47	2.0	46	95	2	170	35	24	8	30	1.85
29387267--29387315	20	2.5	18	78	18	53	67	2	6	24	1.24
29390780--29391002	101	2.2	100	88	1	320	32	13	24	29	1.94
29390812--29391039	33	6.8	33	69	9	124	32	14	24	28	1.95
29393123--29393147	7	3.6	7	100	0	50	48	36	0	16	1.46
29402567--29402608	7	6.0	7	94	0	75	45	0	0	54	0.99
29404679--29404739	26	2.5	24	86	5	77	29	4	3	62	1.32
29404664--29404813	24	6.0	25	71	14	98	31	6	3	59	1.38
29404773--29404854	38	2.2	37	91	6	130	26	0	4	68	1.10
29404793--29404886	39	2.5	38	79	11	104	22	2	6	69	1.22
29415263--29415347	40	2.1	40	84	4	109	49	12	7	30	1.68
29415368--29415700	86	3.9	86	85	3	386	42	16	9	31	1.79
29416612--29416765	62	2.5	62	100	0	308	22	13	31	32	1.93
29417620--29417657	15	2.6	14	84	8	58	44	34	0	21	1.52
29418030--29418107	41	1.9	41	86	5	113	29	30	17	21	1.97
29418151--29418261	40	2.8	39	80	8	118	25	26	19	28	1.99
29418340--29418377	16	2.3	18	86	13	55	26	21	0	52	1.47
29422370--29422445	38	2.0	38	97	0	143	27	6	18	47	1.73
29426545--29426693	72	2.1	72	86	7	205	36	10	8	43	1.71
29428359--29428409	4	12.8	4	100	0	102	50	23	0	25	1.49
29434268--29434308	21	2.0	21	90	0	64	19	29	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29440191--29440216	4	6.5	4	100	0	52	76	0	0	23	0.78
29440741--29441817	127	8.5	127	94	0	1743	30	17	22	28	1.97
29444946--29445005	28	2.2	27	90	3	93	21	1	33	43	1.63
29444956--29444998	22	2.0	22	90	4	70	23	2	32	41	1.67
29445537--29445579	18	2.4	18	84	0	59	46	9	27	16	1.77
29446413--29446450	20	1.9	20	84	10	51	55	7	2	34	1.43
29447397--29447433	11	3.2	12	85	11	51	48	5	18	27	1.70
29447413--29447437	11	2.3	11	100	0	50	48	8	28	16	1.74
29447389--29447488	51	2.0	51	90	4	157	47	3	24	26	1.66
29447448--29447507	11	5.3	11	75	20	52	45	1	26	26	1.63
29447448--29447507	23	2.6	22	82	12	68	45	1	26	26	1.63
29447456--29447501	11	4.0	12	78	16	53	43	2	30	23	1.66
29450799--29450883	20	4.0	23	76	16	83	36	24	23	15	1.93
29451876--29451906	6	5.2	6	92	0	53	3	12	0	83	0.75
29452054--29452089	18	2.0	18	94	0	63	41	5	2	50	1.40
29455672--29455753	30	2.7	30	82	0	101	14	29	31	24	1.95
29456687--29456722	17	2.1	17	90	10	56	41	5	0	52	1.24
29457560--29457601	17	2.4	18	84	4	50	66	9	0	23	1.21
29462179--29462205	14	1.9	14	100	0	54	44	3	0	51	1.19
29463072--29463125	21	2.5	22	76	11	67	57	3	5	33	1.40
29463264--29463302	19	2.1	19	85	9	53	43	12	5	38	1.65
29463866--29463905	19	2.1	19	95	0	71	17	10	2	70	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29466641--29466667	13	2.1	13	100	0	54	25	29	7	37	1.83
29476150--29476262	54	2.1	54	94	0	199	45	1	7	45	1.43
29476154--29476240	28	3.2	27	66	18	72	44	2	9	43	1.48
29476261--29476302	15	2.7	16	82	14	52	45	0	2	52	1.13
29476252--29476293	15	2.9	15	82	10	52	47	0	0	52	1.00
29476429--29476538	45	2.6	41	78	8	107	33	28	5	32	1.80
29476519--29476554	16	2.2	16	100	0	72	38	36	0	25	1.56
29476739--29476770	16	1.9	17	93	6	57	59	15	0	25	1.36
29496931--29496977	22	2.1	22	84	0	58	46	14	21	17	1.83
29498360--29498404	21	2.1	21	87	4	63	28	4	8	57	1.48
29504541--29504576	5	7.2	5	93	0	63	58	2	38	0	1.13
29519715--29519780	31	2.2	30	86	5	89	54	3	3	39	1.31
29529445--29529501	29	1.9	30	82	13	73	19	28	28	24	1.98
29538272--29538305	16	2.1	16	94	0	59	32	5	29	32	1.81
29546359--29546445	20	4.3	20	75	5	86	64	0	0	35	0.94
29546372--29546414	9	4.6	9	77	11	50	72	0	0	27	0.85
29546411--29546478	11	6.4	11	74	19	54	60	0	2	36	1.12
29546420--29546453	17	2.0	17	88	0	50	64	0	0	35	0.94
29546366--29546467	30	3.3	30	77	13	102	62	0	0	36	1.02
29546381--29546495	42	2.8	41	89	7	173	65	0	1	33	1.03
29558526--29558635	29	3.8	28	81	2	103	20	25	25	28	1.99
29562526--29562736	51	4.2	51	90	0	334	32	24	11	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29562526--29562835	102	3.2	101	82	10	342	32	23	11	32	1.90
29562690--29562773	36	2.3	37	93	2	143	34	25	9	30	1.88
29562639--29562823	87	2.1	87	91	0	298	34	23	10	31	1.88
29562726--29562835	51	2.2	51	88	1	159	32	23	10	33	1.88
29562909--29562941	17	1.9	17	88	11	50	45	18	0	36	1.49
29566497--29566527	15	2.0	16	93	6	55	35	0	0	64	0.94
29585310--29585373	29	2.2	30	91	5	112	45	3	26	25	1.68
29594053--29594120	21	3.3	21	72	4	66	55	14	8	20	1.65
29596316--29596350	18	1.9	18	88	0	52	45	2	0	51	1.16
29596321--29596371	18	2.7	19	81	3	50	58	3	1	35	1.28
29597460--29597498	20	2.0	19	85	5	51	25	0	2	71	0.98
29598119--29598151	16	2.1	16	88	11	50	39	0	3	57	1.14
29600030--29600060	5	6.2	5	92	0	53	16	0	0	83	0.64
29609809--29609853	20	2.1	21	84	8	56	44	4	8	42	1.56
29610299--29610369	28	2.5	28	86	4	90	47	7	1	43	1.39
29612029--29612062	14	2.2	16	80	20	54	58	14	5	20	1.57
29612033--29612062	14	2.1	14	100	0	60	60	13	6	20	1.55
29613302--29613342	21	2.0	21	85	9	57	29	21	26	21	1.99
29613549--29613609	18	3.6	18	70	20	58	22	21	34	21	1.97
29613551--29613618	33	2.1	33	91	0	109	19	22	36	22	1.95
29613599--29613636	18	2.1	18	90	0	58	18	21	42	18	1.90
29613638--29613681	15	2.9	15	89	0	70	18	13	36	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29623475--29623571	51	1.9	50	95	2	176	42	17	9	30	1.81
29651034--29651079	18	2.6	18	82	6	58	30	8	23	36	1.85
29653011--29653043	15	2.2	15	89	10	50	57	12	0	30	1.35
29663471--29663512	19	2.4	17	84	15	50	40	4	21	33	1.74
29664073--29664168	45	2.1	46	92	3	158	52	2	6	39	1.39
29666771--29666874	28	3.7	28	86	1	136	29	10	25	33	1.90
29667597--29667655	23	2.6	23	84	7	68	27	20	15	37	1.92
29667619--29667901	48	6.0	48	67	14	131	26	11	18	43	1.84
29667641--29668167	94	5.6	94	94	1	831	25	11	19	43	1.85
29667667--29668096	23	18.4	22	62	14	103	24	11	20	43	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153