genome.fa.s18.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  16  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5470308--5470520	103	2.0	106	87	4	308	26	19	21	32	1.97
5471213--5471464	90	2.8	91	86	5	368	25	6	14	52	1.66
5475650--5475688	20	2.0	20	89	0	60	38	2	0	58	1.12
5476370--5476436	21	3.2	21	87	8	109	29	11	0	58	1.34
5476697--5476756	6	11.0	5	92	7	75	18	18	0	63	1.31
5476752--5476841	26	3.6	25	71	19	80	26	12	0	61	1.31
5476757--5476854	48	2.0	48	86	7	137	24	11	1	63	1.34
5476762--5476839	21	3.4	21	70	21	59	26	12	0	60	1.33
5476789--5476862	22	3.4	21	76	12	62	22	10	1	64	1.32
5476885--5477079	44	4.5	44	90	1	311	36	2	10	49	1.51
5476920--5477107	88	2.1	87	85	5	245	40	2	11	45	1.54
5480675--5480724	26	1.9	26	95	0	91	26	22	30	22	1.99
5483236--5483331	48	2.0	48	93	2	167	42	11	8	37	1.71
5485940--5485997	29	2.0	30	86	10	84	37	5	24	32	1.77
5487874--5488070	105	1.9	105	96	0	367	31	9	14	44	1.77
5490202--5490248	20	2.3	21	78	14	62	59	10	0	29	1.31
5497487--5497546	30	2.0	31	83	9	79	40	1	38	20	1.62
5497808--5497837	12	2.5	12	100	0	60	60	10	10	20	1.57
5498488--5498541	19	2.8	19	97	0	99	38	11	14	35	1.82
5498831--5498904	26	2.7	26	81	10	69	22	5	1	70	1.16
5498831--5498904	27	2.7	27	81	10	71	22	5	1	70	1.16
5498732--5499151	210	2.0	210	98	0	813	24	10	13	51	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5499041--5499114	26	2.7	26	81	10	69	22	5	1	70	1.16
5499041--5499114	27	2.7	27	81	10	71	22	5	1	70	1.16
5504742--5504767	13	2.0	13	100	0	52	61	7	7	23	1.49
5505878--5505923	22	2.1	22	88	8	67	80	4	4	10	0.99
5506458--5506619	46	3.6	45	92	4	256	35	14	22	27	1.93
5514743--5514811	30	2.3	31	77	7	79	44	8	7	39	1.63
5523350--5523400	22	2.3	22	89	0	75	33	1	15	49	1.56
5527957--5528001	22	2.0	22	91	0	72	33	2	15	48	1.57
5537882--5537919	20	1.9	20	89	10	60	65	0	10	23	1.23
5558167--5558192	12	2.2	12	100	0	52	7	7	53	30	1.57
5562668--5564189	761	2.0	761	99	0	3017	26	19	21	33	1.97
5569394--5569463	25	2.7	25	84	4	77	41	0	4	54	1.20
5569420--5569463	18	2.5	18	82	13	56	43	0	4	52	1.22
5576992--5577040	19	2.5	19	80	3	53	46	2	6	44	1.39
5591302--5591336	14	2.5	14	90	0	52	54	0	0	45	0.99
5593921--5593964	21	2.1	21	83	8	54	25	6	2	65	1.28
5594466--5594744	140	2.0	142	92	1	463	37	16	16	28	1.91
5598455--5598493	18	2.2	18	85	0	51	28	2	2	66	1.18
5601164--5601203	3	13.3	3	94	0	71	35	0	0	65	0.93
5602754--5602791	16	2.4	16	90	0	67	31	5	0	63	1.17
5604424--5604474	5	10.2	5	100	0	102	41	0	0	58	0.98
5605404--5605527	40	3.2	38	73	11	108	23	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5605404--5605497	37	2.4	40	77	8	97	23	18	28	29	1.97
5606673--5606708	19	1.9	18	88	5	54	27	2	0	69	1.02
5609836--5609909	38	1.9	38	94	0	130	35	24	12	28	1.91
5611819--5611860	18	2.4	17	84	7	57	30	0	2	66	1.04
5611937--5611972	19	1.9	19	88	5	56	77	0	13	8	0.98
5614958--5615643	284	2.4	282	90	2	1078	29	10	17	43	1.82
5621121--5621166	21	2.2	21	84	0	56	50	0	0	50	1.00
5624877--5624928	15	3.6	15	80	12	56	44	0	1	53	1.11
5624787--5625049	120	2.2	120	97	0	499	41	1	6	49	1.39
5624825--5625012	61	3.1	61	70	14	208	42	1	7	48	1.40
5625006--5625047	15	2.7	16	82	14	52	45	0	2	52	1.13
5624997--5625038	15	2.9	15	82	10	52	47	0	0	52	1.00
5631880--5631907	6	4.7	6	100	0	56	35	14	14	35	1.86
5639152--5639176	13	1.9	13	100	0	50	40	16	0	44	1.47
5652053--5652137	42	2.0	42	90	4	136	29	38	3	28	1.73
5664641--5664675	18	1.9	18	94	0	61	11	22	37	28	1.89
5673129--5673213	42	2.0	42	88	0	125	28	40	3	28	1.73
5673219--5673476	126	2.0	126	91	1	419	27	27	17	27	1.98
5688617--5688660	18	2.4	19	88	3	63	36	0	4	59	1.18
5696019--5696336	161	2.0	162	93	1	548	43	15	11	29	1.81
5698359--5698418	9	6.2	9	83	9	66	6	11	1	80	0.98
5698359--5698418	10	6.1	10	78	7	52	6	11	1	80	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5705734--5705958	33	6.5	33	70	23	158	32	27	20	20	1.97
5705761--5705962	101	2.0	102	93	2	345	32	26	20	20	1.97
5705840--5705998	76	2.2	69	87	8	221	32	26	18	22	1.97
5709791--5709869	37	2.1	37	90	0	122	25	31	18	24	1.98
5709988--5710321	49	6.9	49	92	3	545	29	29	7	33	1.85
5709988--5710312	96	3.4	96	92	3	514	29	29	7	33	1.85
5713983--5714122	74	1.9	74	89	0	217	52	17	12	17	1.75
5728049--5728232	90	2.1	90	92	1	307	50	8	6	34	1.59
5737492--5737523	2	16.5	2	93	6	57	0	50	0	50	1.00
5745330--5745358	6	4.8	6	100	0	58	13	51	0	34	1.42
5750313--5750438	63	2.0	63	93	0	216	35	15	12	36	1.85
5750817--5750921	52	2.0	52	98	0	201	51	17	7	23	1.71
5755397--5755502	53	2.0	53	92	1	178	50	16	5	27	1.67
5756845--5756884	16	2.5	16	87	0	62	25	27	10	37	1.88
5761410--5761486	32	2.4	31	77	16	77	24	0	7	67	1.17
5761943--5762016	35	2.1	35	97	0	139	40	36	4	18	1.70
5763139--5763272	24	5.5	24	71	20	107	29	5	6	58	1.46
5763244--5763287	22	2.0	23	86	4	63	29	9	0	61	1.27
5763287--5763367	33	2.5	33	95	2	146	30	3	4	60	1.35
5763450--5763495	17	2.7	16	83	12	56	26	10	0	63	1.27
5763450--5763496	16	2.8	17	87	6	60	25	10	0	63	1.26
5763932--5763961	13	2.3	13	100	0	60	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5764455--5764520	19	3.3	19	75	17	62	37	3	4	54	1.36
5765018--5765305	125	2.3	125	91	1	461	31	19	20	28	1.97
5768402--5768522	49	2.5	49	94	0	206	44	8	3	43	1.50
5770802--5770847	11	4.2	11	83	8	58	47	0	26	26	1.52
5777527--5777691	61	2.7	61	93	0	267	43	11	4	40	1.62
5777578--5777674	31	3.2	31	68	8	90	44	12	3	40	1.58
5808700--5808736	18	2.0	20	84	10	51	51	5	2	40	1.39
5808722--5808779	31	1.9	30	85	3	80	53	1	1	43	1.21
5809106--5809152	24	2.0	24	84	8	62	25	14	10	48	1.76
5816059--5816106	18	2.7	18	93	0	78	41	16	12	29	1.85
5821755--5821786	15	2.1	15	94	0	55	25	12	9	53	1.68
5827305--5827432	24	5.2	24	73	13	82	35	20	26	17	1.95
5827384--5827475	26	3.6	26	77	12	100	32	25	23	18	1.97
5827522--5827603	24	3.4	24	68	9	58	31	18	29	20	1.96
5829821--5829960	46	3.0	46	92	0	226	30	26	7	35	1.85
5834759--5834812	24	2.3	24	96	3	101	50	7	0	42	1.30
5837556--5837596	16	2.5	17	80	15	50	53	0	2	43	1.13
5844506--5844550	21	2.1	21	83	0	54	37	6	6	48	1.56
5849343--5849383	21	1.9	22	90	5	66	53	2	0	43	1.13
5849352--5849386	18	1.9	18	88	11	54	51	2	0	45	1.16
5850122--5850185	30	2.2	29	82	2	74	34	12	3	50	1.56
5859358--5859388	15	2.1	15	100	0	62	48	0	12	38	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5859559--5859605	19	2.2	20	82	14	51	57	6	0	36	1.24
5872323--5872375	18	2.9	19	77	8	65	41	3	1	52	1.30
5872884--5872929	23	2.0	23	86	0	65	13	10	10	65	1.48
5873393--5873438	23	2.0	23	100	0	92	39	21	8	30	1.84
5873921--5873945	8	3.1	8	100	0	50	24	0	0	76	0.80
5875173--5875233	22	2.7	22	87	2	77	49	1	1	47	1.21
5875209--5875248	16	2.5	16	91	0	62	47	2	7	42	1.45
5875571--5875614	24	1.9	24	90	9	74	61	2	0	36	1.09
5875358--5875637	147	1.9	146	94	3	501	42	10	14	32	1.80
5880174--5880403	90	2.6	86	80	7	205	40	13	7	38	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153