genome.fa.s18.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  55  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18012616--18012664	16	3.1	16	93	0	80	44	24	0	30	1.54
18012576--18012799	34	6.5	34	69	15	131	44	16	1	37	1.56
18012720--18012839	16	7.9	16	69	19	96	45	17	1	35	1.58
18018267--18018431	66	2.5	65	86	3	215	40	18	27	13	1.88
18018462--18018519	21	2.8	21	86	5	82	39	15	41	3	1.64
18018869--18019025	43	3.7	43	84	1	181	22	19	29	27	1.98
18018844--18019015	86	2.0	86	80	2	193	25	19	27	27	1.99
18019070--18019204	43	3.1	42	73	8	146	32	31	16	19	1.94
18019028--18019204	86	2.1	86	88	2	257	32	31	16	20	1.95
18019028--18019226	86	2.3	85	85	3	238	29	30	17	22	1.97
18024684--18024734	19	2.5	20	81	18	61	23	0	3	72	1.01
18026172--18026276	28	3.7	28	92	3	149	41	11	0	46	1.40
18026431--18026593	22	7.3	22	73	20	108	66	0	33	0	0.92
18026438--18026565	40	3.2	39	80	12	145	65	0	34	0	0.93
18026427--18026591	18	9.2	17	76	17	108	67	0	32	0	0.91
18026482--18026585	32	3.2	31	82	9	127	69	0	30	0	0.89
18026482--18026582	33	3.1	32	79	11	114	69	0	30	0	0.89
18026519--18026612	32	3.0	31	77	18	97	68	0	31	0	0.90
18026600--18026624	10	2.5	10	100	0	50	68	0	32	0	0.90
18032324--18033185	430	2.0	430	98	0	1661	25	28	14	31	1.95
18033402--18033463	26	2.4	26	76	10	72	50	9	1	38	1.45
18033639--18033682	3	14.7	3	100	0	88	68	31	0	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18033836--18033895	28	2.2	25	76	18	66	6	21	6	65	1.40
18033927--18034056	27	4.8	27	94	0	197	15	26	29	28	1.96
18034125--18034251	28	4.5	28	95	3	202	51	0	10	38	1.36
18044491--18044582	46	2.0	46	100	0	184	17	13	34	34	1.88
18046862--18046910	23	2.1	23	100	0	98	36	0	16	46	1.47
18047662--18047725	13	4.9	13	90	0	101	39	26	10	23	1.88
18050883--18050950	28	2.4	28	87	0	91	20	22	19	38	1.94
18055270--18055316	22	2.4	19	77	19	51	61	2	10	25	1.39
18056703--18056781	29	2.6	30	88	6	106	41	10	10	37	1.73
18060628--18060689	3	20.7	3	100	0	124	0	32	0	67	0.91
18061447--18061487	5	8.2	5	100	0	82	39	0	0	60	0.96
18062514--18062574	30	2.0	30	93	0	104	36	14	13	36	1.85
18064899--18064928	13	2.3	13	100	0	60	40	43	0	16	1.48
18065094--18065134	9	4.6	9	93	0	64	26	9	24	39	1.86
18072574--18072618	18	2.2	22	85	14	62	40	0	0	60	0.97
18078542--18078606	25	2.6	25	85	0	85	35	23	16	24	1.95
18083491--18083683	43	4.5	43	86	3	255	34	24	15	26	1.94
18086274--18086315	20	2.1	21	87	12	63	16	19	4	59	1.54
18086959--18087023	25	2.6	25	95	0	112	32	26	20	21	1.97
18087008--18087059	27	1.9	27	88	0	77	30	19	26	23	1.98
18092366--18092466	40	2.5	41	85	6	125	31	11	15	40	1.84
18092557--18092679	63	2.0	63	85	6	169	23	17	26	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18096853--18096902	11	4.8	11	72	22	54	40	0	10	50	1.36
18096841--18096900	30	2.0	30	96	0	111	40	0	11	48	1.40
18097354--18097413	26	2.3	25	83	8	75	16	20	21	41	1.90
18113535--18113572	6	6.0	6	96	3	58	15	21	0	63	1.31
18113535--18113574	12	3.1	13	89	10	64	15	22	0	62	1.32
18115818--18115849	4	8.2	4	93	6	57	53	0	0	46	1.00
18120539--18120578	21	1.9	21	85	10	55	55	20	5	20	1.62
18124868--18124907	21	1.9	21	85	10	55	55	20	5	20	1.62
18129252--18129302	25	2.0	25	100	0	102	41	15	11	31	1.83
18129249--18129309	25	2.3	26	86	8	97	39	14	14	31	1.87
18142495--18142546	20	2.7	19	88	5	70	71	1	1	25	1.07
18142495--18142540	20	2.3	20	92	0	74	71	2	2	23	1.08
18142482--18142566	27	3.0	28	75	16	77	68	1	2	28	1.09
18142482--18142556	20	3.9	20	75	13	68	69	1	2	26	1.10
18142482--18142569	18	4.7	18	71	17	63	67	1	2	29	1.10
18142735--18142845	10	11.0	10	70	14	68	29	4	2	63	1.28
18142735--18142845	19	5.5	20	70	16	68	29	4	2	63	1.28
18142735--18142846	9	12.2	9	70	18	56	30	4	2	62	1.29
18142830--18142892	25	2.5	26	79	7	67	34	7	0	57	1.28
18143195--18143228	9	3.7	9	84	7	50	23	0	2	73	0.97
18143185--18143228	19	2.4	18	88	3	61	22	2	2	72	1.07
18143553--18143622	32	2.4	27	71	22	70	52	14	0	32	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18143561--18143624	32	2.0	32	96	0	119	51	15	0	32	1.44
18150025--18150081	25	2.3	25	84	0	69	40	12	5	42	1.65
18150319--18150410	23	3.9	23	80	15	98	30	22	26	20	1.98
18154865--18154901	9	4.1	9	85	0	56	54	5	0	40	1.24
18157228--18157300	31	2.3	32	79	6	87	41	12	10	35	1.78
18160927--18160964	19	2.0	19	100	0	76	5	0	5	89	0.59
18163201--18163252	23	2.3	23	83	6	70	28	0	1	69	0.99
18163208--18163251	14	3.1	14	80	6	54	25	0	2	72	0.96
18164895--18164960	11	5.9	11	75	20	50	24	30	1	43	1.63
18167393--18167458	22	3.0	22	93	0	114	42	33	1	22	1.63
18167463--18167495	15	2.2	15	89	10	50	51	36	0	12	1.39
18170629--18171191	125	4.5	125	91	0	894	29	22	17	30	1.96
18172387--18172479	43	2.1	43	84	9	118	54	3	0	41	1.16
18172478--18172869	33	13.0	32	69	20	263	41	1	2	55	1.19
18172554--18172595	15	2.8	15	78	10	50	50	0	0	50	1.00
18172479--18172869	90	4.3	90	99	0	773	41	1	2	55	1.19
18172644--18172685	15	2.8	15	78	10	50	50	0	0	50	1.00
18172734--18172775	15	2.8	15	78	10	50	50	0	0	50	1.00
18172824--18172865	15	2.8	15	78	10	50	50	0	0	50	1.00
18174253--18174507	75	3.4	75	76	9	252	40	5	10	43	1.62
18174962--18175003	20	2.2	19	87	8	59	26	4	14	54	1.59
18178794--18179078	141	2.0	141	100	0	570	30	20	4	44	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18183598--18183638	16	2.6	16	100	0	82	48	4	0	46	1.23
18183612--18183673	22	2.7	23	92	5	99	50	1	0	48	1.10
18197431--18197477	25	1.9	25	82	4	60	31	2	12	53	1.51
18198576--18198622	24	1.9	24	82	4	58	27	2	14	55	1.51
18203114--18203219	45	2.4	44	81	6	117	41	6	23	28	1.79
18206274--18206319	20	2.3	20	88	0	65	13	32	26	28	1.93
18210220--18211008	262	3.0	262	99	0	1542	33	12	16	36	1.87
18217550--18217607	25	2.4	25	88	2	82	15	31	22	31	1.95
18217609--18217694	25	3.5	24	73	9	66	23	26	16	33	1.95
18217783--18217808	13	2.0	13	100	0	52	53	15	15	15	1.73
18218996--18219045	20	2.5	20	100	0	100	42	0	14	44	1.44
18219007--18219045	12	3.6	12	74	25	50	41	0	12	46	1.42
18219250--18219622	187	2.0	187	98	0	728	35	13	23	27	1.93
18220347--18220394	23	2.1	23	88	0	69	58	12	8	20	1.60
18226423--18226471	23	2.1	24	84	3	64	12	26	18	42	1.85
18233668--18233767	23	4.4	23	75	20	86	40	4	1	55	1.26
18233640--18233773	45	2.9	46	80	14	136	38	5	2	53	1.36
18234356--18234431	3	25.0	3	91	2	125	30	0	3	65	1.10
18240084--18240135	24	2.2	24	89	0	77	55	9	1	32	1.43
18242054--18242105	24	2.2	24	89	0	77	55	9	1	32	1.43
18245902--18246522	308	2.0	309	98	0	1199	32	15	17	35	1.91
18250922--18250975	27	2.0	27	100	0	108	14	37	18	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18259796--18259840	9	5.3	9	81	10	51	55	28	0	15	1.41
18259805--18259852	15	3.1	15	75	6	51	54	31	0	14	1.41
18260282--18260340	10	6.4	9	74	16	50	66	3	1	28	1.18
18260314--18260383	20	3.5	20	74	16	63	61	1	4	32	1.24
18262855--18262964	38	2.8	38	83	5	132	36	8	8	47	1.63
18262868--18263005	39	3.6	38	72	19	108	36	7	9	46	1.66
18263986--18264022	19	1.9	19	100	0	74	43	21	16	18	1.88
18266771--18266866	38	2.5	39	84	1	131	35	8	10	45	1.68
18266771--18266897	39	3.3	36	76	13	112	36	8	10	44	1.69
18272793--18272882	19	4.7	18	70	20	60	61	1	7	30	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153