genome.fa.s18.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  26  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9136736--9136798	32	2.0	32	93	0	108	20	15	15	47	1.82
9137664--9138518	300	2.9	293	78	9	836	40	10	14	34	1.80
9145835--9145901	22	3.1	21	81	10	82	38	22	25	13	1.90
9152809--9152833	3	8.3	3	100	0	50	68	0	32	0	0.90
9161093--9161123	11	2.8	11	95	0	53	19	48	3	29	1.64
9161667--9161743	18	4.3	18	91	0	118	28	22	18	31	1.97
9161667--9161747	36	2.2	36	95	0	144	28	22	17	32	1.96
9169728--9169972	124	2.0	125	86	4	352	30	14	22	33	1.94
9179712--9179753	22	1.9	22	90	0	66	33	0	33	33	1.58
9179725--9179783	30	2.0	30	93	0	100	33	0	35	30	1.58
9179703--9179805	52	2.0	51	85	9	138	34	0	33	32	1.58
9179755--9179846	22	4.2	22	83	10	125	40	0	29	30	1.57
9179755--9179846	44	2.1	44	89	4	141	40	0	29	30	1.57
9190493--9190552	30	1.9	32	83	6	79	46	1	3	48	1.28
9190479--9190552	35	2.2	33	77	15	80	48	1	2	47	1.24
9192468--9192742	145	2.0	139	90	8	445	44	10	12	32	1.77
9193938--9194036	44	2.2	44	96	0	180	28	15	25	31	1.95
9193970--9194159	57	3.3	57	92	0	308	33	12	24	30	1.91
9194071--9194107	7	5.3	7	90	0	56	37	2	29	29	1.71
9195755--9195888	40	3.4	39	71	11	112	26	14	24	35	1.93
9197437--9197555	60	2.0	60	86	3	168	42	3	9	44	1.53
9197521--9197576	21	2.6	21	78	13	60	51	5	3	39	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9203812--9203872	29	2.1	28	85	8	79	26	14	16	42	1.87
9206261--9207410	575	2.0	575	99	0	2273	25	17	16	40	1.90
9207153--9207503	181	2.0	174	85	5	479	30	18	12	38	1.89
9216897--9217071	81	2.2	82	86	5	257	38	5	13	42	1.67
9217717--9217787	31	2.3	31	83	7	83	32	11	11	45	1.75
9232031--9232085	4	13.8	4	100	0	110	50	23	0	25	1.49
9234139--9234232	45	2.1	45	87	0	134	32	23	17	26	1.96
9234238--9234374	51	2.7	51	87	4	204	31	27	17	23	1.97
9236948--9236989	14	2.8	15	82	7	50	59	4	0	35	1.19
9237432--9237537	49	2.2	48	86	9	146	26	19	16	36	1.94
9241553--9241588	2	18.0	2	100	0	72	0	0	50	50	1.00
9243943--9244082	42	3.3	42	85	7	176	32	25	17	25	1.97
9243924--9244082	43	3.7	42	83	4	185	32	25	17	24	1.97
9245157--9245181	13	1.9	13	100	0	50	40	24	4	32	1.73
9245613--9245664	20	2.8	18	76	21	54	50	3	3	42	1.39
9245580--9245724	68	2.1	71	80	7	163	49	4	4	42	1.41
9247901--9247987	25	3.5	25	82	6	113	31	21	28	18	1.97
9258257--9258426	47	3.5	48	74	13	150	27	10	27	35	1.88
9258265--9258372	53	2.0	53	84	7	139	27	8	25	37	1.85
9258439--9258575	33	4.1	32	68	9	94	30	15	24	29	1.95
9258595--9258645	24	2.1	24	85	7	68	50	5	21	21	1.69
9266736--9266844	57	1.9	57	90	3	175	32	20	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9266968--9267102	67	2.0	67	91	0	216	24	17	29	28	1.97
9283849--9283887	18	2.2	18	100	0	78	56	10	0	33	1.33
9285429--9285744	41	7.7	41	96	0	569	24	27	19	28	1.99
9286789--9286873	43	2.0	43	97	0	161	29	22	10	37	1.88
9295577--9295620	23	2.0	22	86	4	61	29	40	4	25	1.75
9314740--9314782	19	2.2	19	91	4	68	32	0	0	67	0.91
9325863--9325909	22	2.2	21	77	7	51	31	10	4	53	1.55
9330433--9330498	30	2.2	30	83	5	80	63	1	3	31	1.19
9330640--9330695	29	2.0	29	86	10	80	60	0	1	37	1.07
9342256--9342478	40	5.6	39	82	5	216	27	27	20	24	1.99
9342254--9342478	80	2.8	79	82	6	240	27	28	20	24	1.99
9342256--9342478	120	1.9	119	83	4	288	27	27	20	24	1.99
9347620--9347682	21	3.2	21	65	21	64	44	6	20	28	1.76
9347611--9347681	37	1.9	37	97	0	133	47	5	16	29	1.70
9348679--9349716	46	22.7	46	96	1	1824	25	25	13	35	1.92
9351782--9351837	24	2.3	24	81	3	58	58	3	1	35	1.26
9354023--9354239	88	2.4	88	82	6	251	38	19	11	30	1.86
9354347--9354395	19	2.5	19	87	9	64	65	0	6	28	1.16
9354403--9354454	19	2.9	17	81	15	61	67	1	1	28	1.12
9354335--9354461	10	13.4	10	70	8	70	60	0	3	35	1.18
9354414--9354499	19	4.5	19	67	17	52	62	1	6	29	1.28
9356647--9356795	48	3.1	47	82	1	181	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9364169--9364278	27	4.0	27	89	4	150	32	25	12	29	1.93
9371185--9371336	27	5.6	27	93	3	232	30	28	13	26	1.94
9371185--9371336	55	2.8	55	93	0	250	30	28	13	26	1.94
9374291--9374443	77	2.0	77	94	0	270	20	30	20	28	1.98
9375828--9375934	54	2.0	54	94	0	187	29	20	12	37	1.89
9377146--9378075	40	23.3	40	94	0	1565	27	27	20	25	1.99
9379521--9380112	297	2.0	297	97	0	1121	25	23	18	33	1.97
9384838--9384975	43	3.2	43	86	4	188	28	34	16	20	1.94
9387718--9387748	10	3.1	10	95	0	53	51	12	19	16	1.76
9390775--9390821	24	1.9	24	83	12	60	40	8	4	46	1.54
9390840--9390995	75	2.1	77	87	4	228	30	10	14	44	1.79
9391785--9391899	21	5.5	21	77	4	88	31	39	0	28	1.63
9391785--9391888	7	14.9	7	70	0	64	28	41	0	28	1.63
9391785--9391888	14	7.4	14	76	4	84	28	41	0	28	1.63
9391888--9391917	14	2.1	14	93	0	51	46	26	0	26	1.53
9393786--9393833	14	3.5	13	86	8	60	27	2	4	66	1.21
9393890--9393936	20	2.3	20	88	0	67	29	8	4	57	1.48
9397778--9398054	125	2.2	125	90	0	439	30	16	22	30	1.96
9408097--9408137	21	2.0	21	85	9	57	46	24	14	14	1.82
9417978--9418010	12	3.0	11	91	8	50	36	0	3	60	1.12
9419777--9419939	49	3.4	48	86	1	202	22	14	38	23	1.92
9421011--9421060	6	7.5	6	81	18	55	78	2	0	20	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9421008--9421074	28	2.3	28	87	5	98	73	4	0	22	1.01
9421372--9421431	3	19.7	3	74	16	52	61	3	1	33	1.22
9421372--9421417	14	3.4	14	83	16	53	65	2	0	32	1.05
9421374--9421416	11	4.1	10	83	16	52	67	2	0	30	1.03
9421895--9422296	201	2.0	201	99	0	795	41	14	12	32	1.83
9428272--9428362	25	3.6	25	71	11	62	21	20	24	32	1.98
9440485--9440551	26	2.6	26	95	2	118	46	4	0	49	1.22
9441202--9441251	15	3.1	15	85	8	64	42	0	14	44	1.44
9444477--9444532	25	2.2	25	100	0	112	26	16	30	26	1.96
9444835--9444885	25	2.0	25	96	0	93	58	9	11	19	1.60
9448768--9448803	14	2.5	15	90	4	56	33	8	0	58	1.28
9449016--9449051	19	2.0	18	89	10	56	47	11	8	33	1.69
9449021--9449059	19	2.1	19	90	0	60	51	12	10	25	1.71
9452798--9453287	126	3.9	126	96	0	881	27	22	18	30	1.98
9453436--9453660	96	2.3	95	77	7	229	41	16	2	39	1.62
9454078--9454128	17	3.0	17	80	11	52	60	0	1	37	1.08
9462364--9462442	10	7.7	10	73	17	56	58	0	1	40	1.06
9462364--9462395	11	3.0	11	95	4	57	56	0	0	43	0.99
9462440--9462497	20	3.0	20	77	12	66	53	1	0	44	1.10
9462472--9462524	21	2.7	19	80	11	61	58	1	1	37	1.20
9462416--9462526	10	11.7	9	71	21	59	54	0	0	43	1.12
9462762--9462791	3	10.0	3	92	0	51	70	0	30	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9462802--9462850	20	2.5	20	90	9	75	34	0	2	63	1.06
9462802--9462876	10	7.8	10	73	16	61	37	1	1	60	1.14
9462815--9462899	20	4.3	20	73	14	54	38	2	1	57	1.19
9462841--9462874	17	2.0	17	88	0	50	44	2	0	52	1.16
9462846--9462903	19	3.1	19	78	11	57	41	5	0	53	1.23
9462834--9462903	20	3.6	20	72	18	67	41	4	0	54	1.20
9462891--9462960	34	2.0	34	83	8	88	34	4	1	60	1.25
9462873--9462952	20	4.2	20	65	20	55	33	5	1	60	1.27
9464964--9465017	25	2.2	24	83	3	63	14	20	29	35	1.93
9464976--9465023	24	2.0	25	91	4	80	12	16	29	41	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153