genome.fa.s18.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  75  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23807932--23807982	24	2.1	24	88	0	75	29	25	17	27	1.98
23809849--23809913	34	1.9	34	90	0	103	43	10	10	35	1.75
23809849--23809921	34	2.1	34	84	0	101	43	12	9	34	1.75
23810374--23810546	60	3.0	57	81	9	197	26	16	13	43	1.85
23810383--23810546	56	2.8	57	81	8	179	26	16	13	43	1.85
23810297--23810781	263	1.8	264	83	5	651	28	14	14	42	1.85
23812808--23812940	27	5.0	26	84	9	178	41	17	19	21	1.90
23812808--23812940	53	2.5	53	91	6	214	41	17	19	21	1.90
23812809--23812956	27	5.6	26	80	10	142	39	18	19	22	1.93
23834546--23834578	15	2.2	15	94	0	57	63	12	0	24	1.28
23834951--23835012	30	2.1	28	85	8	79	66	3	1	29	1.17
23834955--23835012	28	2.0	30	86	10	84	67	1	1	29	1.11
23834999--23835059	27	2.2	28	80	13	74	60	3	3	32	1.29
23835250--23835281	6	5.3	6	100	0	64	84	0	0	15	0.63
23836661--23836776	44	2.6	44	77	12	130	30	22	15	31	1.95
23837357--23837502	72	2.0	72	89	0	220	20	25	28	25	1.99
23837442--23837603	88	1.8	88	91	0	270	21	23	27	27	1.99
23841374--23841417	24	2.0	21	86	13	61	77	6	4	11	1.11
23842529--23842579	16	3.2	16	83	5	59	21	3	5	68	1.27
23842570--23842597	8	3.5	8	100	0	56	10	0	0	89	0.49
23847709--23847768	25	2.4	25	75	22	63	68	10	10	11	1.40
23849974--23850805	415	2.0	415	99	0	1655	38	16	23	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23851918--23852037	46	2.6	46	90	0	186	30	20	18	30	1.96
23852058--23852174	44	2.8	42	76	8	112	32	16	20	30	1.94
23851790--23852195	221	1.8	220	91	3	672	31	17	20	29	1.96
23852219--23852802	50	11.7	50	72	4	372	33	21	19	25	1.97
23852189--23852877	100	6.9	100	82	3	749	32	21	20	25	1.97
23852238--23852877	50	12.8	47	69	11	199	32	21	20	25	1.97
23853098--23853171	24	2.9	25	82	6	69	72	6	2	17	1.18
23857474--23857506	15	2.2	15	94	0	57	63	12	0	24	1.28
23857884--23857943	30	2.0	32	87	9	90	66	1	1	30	1.11
23857905--23857949	23	2.0	23	82	8	56	64	4	2	28	1.25
23858177--23858202	6	4.3	6	100	0	52	84	0	0	15	0.62
23860802--23860827	5	5.2	5	100	0	52	38	19	19	23	1.93
23867162--23867471	157	2.0	157	94	0	548	46	5	3	44	1.42
23867514--23867544	16	1.9	16	93	0	53	22	25	3	48	1.66
23871403--23871433	6	5.0	6	96	4	53	64	3	0	32	1.09
23872308--23872401	41	2.3	41	80	7	102	19	22	25	32	1.97
23875778--23875829	19	2.6	20	78	6	61	17	19	15	48	1.82
23877726--23877841	43	2.7	43	74	12	121	23	20	27	28	1.99
23883748--23883785	18	2.0	21	85	15	55	23	18	18	39	1.92
23888319--23889496	587	2.0	587	96	0	2196	31	22	15	30	1.95
23892437--23892475	21	1.9	20	84	5	51	38	0	23	38	1.55
23905571--23905604	17	2.0	17	88	0	50	20	8	11	58	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23906151--23906188	2	19.5	2	89	5	51	47	0	5	47	1.24
23912129--23912190	12	5.1	12	72	27	51	46	0	3	50	1.17
23912071--23912185	58	1.9	58	84	6	151	46	1	3	48	1.29
23913922--23914004	5	16.6	5	76	0	67	36	20	7	36	1.80
23913931--23914004	30	2.5	30	84	0	94	36	20	8	35	1.82
23914326--23914362	19	2.0	18	89	5	56	56	18	0	24	1.41
23914995--23915039	20	2.1	22	88	8	67	75	0	20	4	0.97
23920237--23920275	14	3.1	14	72	27	50	61	0	0	38	0.96
23920235--23920276	16	2.6	16	81	14	50	61	0	0	38	0.96
23921216--23921262	17	2.8	16	78	9	58	48	0	4	46	1.21
23924096--23924150	26	2.1	26	100	0	110	40	14	18	27	1.89
23926390--23926566	42	4.2	41	86	3	230	28	20	20	30	1.97
23926390--23926566	84	2.1	83	87	3	257	28	20	20	30	1.97
23937405--23937459	6	9.3	6	96	4	103	16	0	0	83	0.64
23937704--23937751	22	2.2	22	88	0	69	29	39	2	29	1.68
23940715--23940739	12	2.1	12	100	0	50	16	24	0	60	1.36
23946068--23946241	42	4.2	42	86	0	233	28	20	19	31	1.97
23947174--23947204	4	7.8	4	100	0	62	51	22	0	25	1.48
23949967--23950150	43	4.3	43	91	0	269	26	15	25	33	1.95
23949913--23950150	86	2.8	86	85	3	284	27	14	24	33	1.95
23949912--23950150	129	1.9	127	84	2	325	27	14	25	33	1.95
23960174--23960201	14	2.0	14	100	0	56	64	14	0	21	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23962976--23963001	7	3.7	7	100	0	52	42	0	0	57	0.98
23962978--23963025	24	2.0	25	83	4	62	43	0	0	56	0.99
23966307--23966348	20	2.2	19	83	12	50	16	14	4	64	1.45
23968325--23968687	43	8.5	42	83	3	395	28	27	16	27	1.97
23968724--23968785	30	2.0	32	84	12	85	43	4	3	48	1.40
23968767--23968852	39	2.3	39	82	9	101	59	2	0	38	1.10
23968919--23969002	43	2.0	43	87	0	123	45	11	10	32	1.75
23974433--23974504	33	2.2	33	89	0	108	34	44	4	16	1.67
23974549--23974580	15	2.1	16	94	5	57	46	31	0	21	1.52
23974594--23974633	7	5.7	7	84	0	53	27	50	2	20	1.61
23975373--23975609	41	5.9	41	82	5	277	28	26	23	21	1.99
23975646--23975780	40	3.4	39	79	8	132	20	22	20	37	1.95
23975786--23975811	12	2.2	12	100	0	52	46	23	15	15	1.83
23976887--23976924	4	9.8	4	88	5	60	73	2	23	0	0.95
23981829--23981869	17	2.5	17	85	14	59	75	2	17	4	1.08
24010942--24010971	8	3.8	8	95	0	51	40	6	23	30	1.80
24017853--24018522	27	25.1	27	83	6	649	41	21	16	20	1.90
24017997--24018527	53	9.9	54	84	2	653	41	22	16	19	1.90
24017853--24018527	80	8.4	81	86	4	725	41	21	16	20	1.90
24017853--24018529	107	6.4	108	79	7	656	41	21	16	20	1.90
24019256--24019445	27	7.1	27	87	3	195	40	20	17	21	1.91
24019262--24019445	54	3.4	54	85	3	237	40	20	17	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24019256--24019450	80	2.4	81	85	4	243	40	20	17	21	1.91
24026953--24027011	28	2.1	28	90	0	91	47	1	20	30	1.60
24026963--24027052	41	2.2	41	90	2	137	40	1	21	37	1.61
24033752--24033795	21	2.1	21	86	0	61	34	36	9	20	1.84
24036959--24037143	40	4.6	39	82	5	194	24	23	27	24	2.00
24036959--24037143	79	2.3	80	82	7	207	24	23	27	24	2.00
24037012--24037166	79	2.0	79	82	7	190	26	21	26	25	2.00
24059374--24059424	20	2.5	21	84	6	70	29	9	17	43	1.81
24062049--24062175	66	1.9	66	88	0	191	40	19	18	21	1.91
24063337--24063401	32	2.1	32	91	2	105	29	7	15	47	1.73
24069512--24069576	32	2.1	32	97	2	123	30	9	12	47	1.72
24071761--24071946	40	4.7	40	86	5	225	26	26	21	24	1.99
24074193--24074292	50	2.0	50	100	0	200	28	28	18	26	1.98
24083749--24083861	40	2.8	40	86	5	149	25	24	21	28	1.99
24083870--24083989	40	3.0	41	79	9	140	25	25	21	26	2.00
24083772--24083950	95	1.9	95	100	0	358	24	23	20	31	1.98
24092257--24092317	21	3.0	20	83	9	79	27	29	26	16	1.97
24098567--24098620	24	2.3	24	80	3	65	46	1	0	51	1.11
24106851--24106882	4	8.2	4	93	6	57	53	0	0	46	1.00
24106841--24106887	19	2.5	19	83	10	62	57	0	0	42	0.98
24106851--24106879	15	1.9	15	100	0	58	51	0	0	48	1.00
24111259--24111305	24	1.9	25	86	4	69	63	0	10	25	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24112543--24112628	11	7.5	11	77	11	75	61	0	1	37	1.04
24112538--24112640	47	2.2	47	94	3	181	65	0	0	33	1.00
24117293--24117332	13	3.1	13	85	0	62	27	7	22	42	1.80
24121993--24122040	21	2.4	19	86	6	60	35	6	2	56	1.36
24124972--24124996	12	2.1	12	100	0	50	48	8	0	44	1.32
24127815--24127867	21	2.5	22	84	3	72	9	32	30	28	1.88
24129828--24129859	4	8.0	4	100	0	64	50	0	0	50	1.00
24131206--24131282	36	2.1	36	83	4	93	37	16	10	35	1.83
24137593--24137646	27	2.0	26	82	10	65	38	7	1	51	1.41
24137971--24138009	16	2.5	15	80	8	51	28	0	5	66	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153