genome.fa.s18.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  118  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36907674--36907883	3	71.7	3	70	14	84	64	4	2	28	1.27
36907704--36907762	17	3.6	16	84	8	66	69	1	0	28	0.98
36907704--36907763	23	2.6	24	86	5	79	68	1	0	30	0.99
36907769--36907868	20	5.5	18	70	16	57	64	3	3	30	1.24
36907841--36907883	16	2.8	16	89	3	61	65	2	0	32	1.06
36908099--36908148	24	2.1	24	96	0	91	22	4	50	24	1.66
36908127--36908184	17	3.6	17	80	17	79	18	0	50	31	1.48
36908142--36908195	13	3.8	13	75	17	54	18	0	46	35	1.50
36908127--36908195	30	2.3	30	94	0	120	18	0	49	31	1.48
36909827--36909888	29	2.1	31	85	11	85	32	6	3	58	1.40
36910754--36910786	3	11.0	3	100	0	66	0	33	0	66	0.92
36917688--36917742	28	2.0	28	96	0	101	29	12	14	43	1.82
36918946--36918989	17	2.6	17	77	0	52	59	2	4	34	1.30
36925213--36925239	6	4.5	6	100	0	54	14	18	66	0	1.25
36926698--36927069	130	2.9	129	80	2	395	28	18	18	34	1.95
36931397--36931452	18	3.1	18	69	21	53	53	3	7	35	1.46
36931398--36931453	19	3.0	19	69	21	55	55	3	7	33	1.45
36948523--36948547	8	3.1	8	100	0	50	24	12	52	12	1.72
36948666--36948701	18	2.0	18	100	0	72	33	16	16	33	1.92
36959218--36959263	19	2.4	19	89	10	67	23	15	15	45	1.84
36964471--36964516	15	3.1	14	84	3	56	54	4	8	32	1.51
36972979--36973022	22	2.0	22	95	0	79	36	15	4	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36973354--36973500	78	1.9	78	95	0	267	27	27	19	25	1.99
36973448--36973553	53	2.0	53	100	0	212	22	32	15	30	1.94
36974683--36974838	25	6.0	26	72	14	108	32	8	4	54	1.50
36974705--36974822	28	4.3	28	77	13	104	32	8	4	55	1.50
36974976--36975045	30	2.3	31	78	14	74	31	1	1	65	1.10
36974994--36975041	23	2.1	23	92	7	80	31	0	2	66	1.03
36974994--36975034	7	5.6	7	94	2	64	31	0	2	65	1.05
36974987--36975034	16	3.2	15	91	5	71	31	2	2	64	1.16
36974994--36975045	16	3.3	16	84	15	65	30	0	1	67	1.02
36985439--36985992	75	7.5	75	89	3	800	33	15	18	32	1.92
36986028--36986060	15	2.2	15	94	0	57	15	15	6	63	1.49
36985939--36986199	103	2.5	104	83	5	323	26	16	18	38	1.92
36986310--36986348	13	2.9	13	84	3	51	15	7	7	69	1.35
36986229--36986432	104	2.0	101	81	4	239	24	13	18	43	1.86
36986027--36986498	192	2.5	193	89	4	715	25	14	18	40	1.89
36986330--36986494	88	1.8	91	83	6	221	27	14	18	39	1.90
36987575--36987604	2	15.0	2	100	0	60	0	50	0	50	1.00
36987611--36987654	23	1.9	23	86	9	63	34	4	0	61	1.16
36987614--36987668	20	2.6	21	83	11	60	32	5	3	58	1.38
36987674--36987825	27	5.8	26	79	9	141	32	8	3	55	1.49
36987686--36987829	25	5.6	25	77	11	105	33	7	3	55	1.45
36987980--36988031	16	3.2	16	86	8	70	28	1	3	65	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36987980--36988025	8	5.8	8	84	7	58	30	2	2	65	1.16
36990219--36990267	20	2.4	20	77	16	55	51	10	14	24	1.73
36996155--36996202	25	1.9	25	83	8	62	41	0	2	56	1.11
36996969--36997020	26	2.0	26	100	0	104	34	15	7	42	1.75
37004037--37004151	57	2.0	57	98	0	221	38	7	22	31	1.83
37008084--37008128	19	2.6	17	86	10	56	53	0	2	44	1.13
37011163--37011223	30	2.1	29	81	3	68	47	0	9	42	1.36
37027406--37027434	14	2.1	14	100	0	58	34	13	20	31	1.92
37027786--37027811	7	3.7	7	100	0	52	88	0	0	11	0.52
37033136--37033194	31	1.9	32	86	6	86	44	16	11	27	1.83
37034006--37034043	19	2.0	19	94	0	67	44	0	13	42	1.43
37034114--37034269	79	2.0	79	96	2	287	37	25	5	32	1.78
37036200--37036238	18	2.1	19	90	4	62	61	0	7	30	1.24
37039605--37039641	17	2.2	17	90	0	56	62	2	2	32	1.23
37049309--37049356	22	2.2	22	100	0	96	37	12	8	41	1.73
37051176--37051212	17	2.2	17	90	4	58	18	2	2	75	1.04
37060915--37060966	24	2.2	23	80	10	61	26	3	7	61	1.41
37068738--37068762	12	2.1	12	100	0	50	28	0	8	64	1.22
37071253--37071549	140	2.1	138	80	4	310	26	12	11	50	1.73
37071630--37071682	17	3.1	16	78	19	61	73	0	0	26	0.83
37071632--37071683	19	3.0	16	82	17	68	75	0	0	25	0.81
37079128--37079174	23	2.0	24	84	12	62	21	25	0	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37083738--37083777	20	2.0	20	100	0	80	35	10	15	40	1.80
37088188--37088705	132	3.9	131	80	5	501	33	18	20	28	1.96
37092226--37092258	17	1.9	17	93	0	57	81	0	3	15	0.80
37092218--37092260	13	3.3	13	81	9	52	83	0	4	11	0.78
37100233--37100460	46	5.0	46	89	1	296	40	14	22	22	1.90
37109505--37109542	17	2.2	18	85	4	51	28	5	10	55	1.56
37109922--37109990	29	2.3	28	79	16	68	44	0	2	52	1.16
37115795--37115861	30	2.2	31	86	2	91	29	19	8	41	1.82
37116265--37116377	60	1.9	60	81	0	136	46	11	16	24	1.80
37126252--37126339	43	2.0	43	93	4	151	30	10	13	45	1.77
37126683--37126719	9	4.3	9	83	13	51	72	5	0	21	1.04
37126682--37126713	16	2.0	16	93	0	55	75	3	0	21	0.95
37128078--37128140	30	2.1	30	82	8	76	50	1	0	47	1.10
37128392--37128453	31	2.0	31	100	0	124	41	19	16	22	1.89
37128918--37128945	14	2.0	14	100	0	56	35	0	0	64	0.94
37131315--37131366	24	2.2	24	89	0	77	55	9	1	32	1.43
37131411--37131448	19	2.0	19	100	0	76	26	10	21	42	1.85
37132608--37132659	24	2.2	24	89	0	77	55	9	1	32	1.43
37136345--37136378	17	2.0	17	88	11	52	64	0	0	35	0.94
37137516--37137569	28	2.0	27	82	13	67	51	9	5	33	1.57
37144681--37144729	26	1.9	25	87	4	71	48	0	4	46	1.20
37150120--37150254	62	2.2	62	86	5	186	48	12	15	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37150514--37150567	19	2.8	19	97	0	99	55	3	0	40	1.17
37150513--37150575	19	3.3	19	90	0	90	58	3	0	38	1.14
37154104--37154135	15	2.2	15	94	5	57	21	9	0	68	1.17
37154413--37154442	2	15.5	2	93	6	53	46	0	0	53	1.00
37155513--37155540	14	2.0	14	100	0	56	57	0	0	42	0.99
37155884--37155913	14	2.1	14	93	0	51	33	0	3	63	1.11
37181773--37181803	15	2.1	15	100	0	62	48	12	0	38	1.42
37194254--37194324	22	3.2	22	63	21	58	16	8	12	61	1.54
37194254--37194343	44	2.1	43	97	2	171	14	8	13	63	1.52
37195544--37195591	23	2.1	23	100	0	96	33	25	12	29	1.92
37198336--37198397	20	3.2	20	66	22	51	62	1	3	32	1.20
37198326--37198408	38	2.2	38	80	6	87	60	3	4	31	1.35
37202744--37202806	23	2.7	25	77	18	73	34	0	1	63	1.04
37204996--37205044	22	2.2	22	81	0	62	61	2	2	34	1.19
37205391--37205437	23	2.0	23	83	0	58	51	0	17	31	1.46
37208689--37208771	33	2.5	33	86	1	114	30	12	25	32	1.92
37208663--37208771	33	3.3	32	82	3	112	33	13	22	30	1.93
37213309--37213337	4	7.2	4	100	0	58	0	24	0	75	0.80
37216827--37216855	12	2.4	12	100	0	58	20	44	27	6	1.77
37219032--37219056	7	3.6	7	100	0	50	48	36	0	16	1.46
37221921--37221987	34	2.0	34	100	0	134	32	2	23	40	1.70
37222661--37222821	45	3.6	45	88	5	204	22	22	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37224097--37224223	64	2.0	63	90	1	200	22	22	13	40	1.89
37232949--37233099	53	2.8	53	88	4	205	29	27	16	26	1.97
37233943--37233971	15	1.9	15	100	0	58	34	13	0	51	1.42
37236214--37236290	21	3.7	21	73	0	73	44	15	23	16	1.86
37242129--37242170	16	2.7	15	80	16	50	30	0	4	64	1.14
37242133--37242181	17	2.9	17	77	14	57	34	0	4	61	1.15
37244862--37244886	13	1.9	13	100	0	50	88	0	0	12	0.53
37249487--37249535	16	3.1	15	78	18	55	69	0	0	30	0.89
37249490--37249535	15	2.9	16	78	21	60	67	0	0	32	0.91
37249972--37250027	25	2.2	25	78	6	60	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153