genome.fa.s18.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  120  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37593594--37593690	50	1.9	50	93	0	167	27	25	20	25	1.99
37595113--37595165	12	4.4	12	75	15	56	37	22	18	20	1.94
37597214--37597277	11	5.8	11	77	0	74	28	3	20	48	1.64
37597092--37597276	22	8.3	22	75	8	140	25	8	21	44	1.80
37602816--37602845	15	2.0	15	100	0	60	26	0	20	53	1.46
37604669--37604728	11	5.5	11	70	7	50	23	13	23	40	1.90
37604669--37605035	22	16.3	22	74	9	247	23	10	22	44	1.83
37604758--37604841	11	7.6	11	74	5	80	22	8	25	44	1.80
37604669--37604944	113	2.4	113	91	0	426	23	10	22	43	1.84
37604780--37605058	91	3.1	91	91	1	443	23	10	21	44	1.82
37606064--37606105	22	1.9	22	90	0	66	33	21	28	16	1.95
37608387--37608415	15	1.9	15	100	0	58	51	0	0	48	1.00
37608833--37608885	20	2.7	19	82	8	61	24	0	3	71	1.02
37608841--37608881	22	1.9	21	90	5	64	24	0	2	73	0.96
37608852--37608921	17	4.6	16	70	18	60	28	2	1	67	1.14
37610873--37610988	30	3.9	30	83	0	160	37	18	14	28	1.91
37621199--37621247	13	3.5	15	71	18	52	24	0	2	73	0.94
37621227--37621284	23	2.5	23	77	2	62	32	3	0	63	1.11
37621278--37621311	14	2.5	14	90	4	52	35	0	2	61	1.11
37621316--37621373	24	2.3	25	85	8	73	32	3	1	62	1.22
37623333--37623406	17	4.4	16	75	14	60	67	0	4	28	1.09
37623344--37623406	8	7.5	8	79	15	56	69	0	3	26	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37623289--37623427	9	15.4	9	72	18	76	65	0	4	29	1.17
37623541--37623583	20	2.1	20	82	4	50	27	4	6	60	1.43
37623573--37623664	38	2.4	37	75	10	87	29	4	0	66	1.11
37623658--37623705	20	2.4	21	82	10	64	39	0	0	60	0.97
37623824--37623851	13	2.2	13	100	0	56	28	0	7	64	1.20
37628350--37628382	10	3.0	11	86	13	50	18	36	0	45	1.49
37628365--37628487	51	2.4	51	89	4	187	26	25	0	47	1.57
37628482--37628587	52	2.0	52	100	0	212	37	5	1	54	1.35
37629677--37629702	7	3.7	7	100	0	52	26	0	15	57	1.38
37630898--37631580	29	23.0	29	86	4	943	45	30	0	23	1.56
37630898--37631578	327	2.1	327	98	0	1328	45	30	0	23	1.56
37631531--37631619	46	1.9	46	97	0	169	46	23	0	30	1.53
37631560--37631597	17	2.2	17	100	0	76	52	15	0	31	1.43
37631621--37632036	37	11.2	37	95	0	733	40	9	3	46	1.52
37635073--37635449	125	3.0	124	89	2	560	32	22	15	29	1.95
37635831--37635855	3	8.3	3	100	0	50	64	0	0	36	0.94
37635940--37636010	35	2.0	35	97	0	133	38	2	0	59	1.12
37637532--37637567	17	2.0	17	89	10	54	27	2	19	50	1.62
37660396--37660580	79	2.3	81	83	7	227	24	22	27	24	2.00
37660397--37660580	40	4.6	40	82	9	207	25	22	27	24	2.00
37660449--37660613	79	2.1	79	83	6	201	26	21	27	24	1.99
37663918--37663974	21	2.7	22	89	5	82	29	19	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37681510--37681615	55	1.9	55	84	0	140	35	16	14	33	1.89
37683968--37684008	20	2.0	20	100	0	82	24	26	14	34	1.94
37687986--37688014	12	2.3	13	94	5	51	20	6	6	65	1.40
37709694--37709743	24	2.0	26	84	7	68	64	22	4	10	1.41
37714035--37714091	24	2.3	26	79	8	66	66	7	0	26	1.17
37714316--37714377	11	5.5	11	75	9	54	58	24	12	4	1.54
37716681--37716811	66	2.0	66	98	0	253	48	14	4	32	1.64
37720326--37720486	38	4.2	38	89	1	243	21	22	25	30	1.99
37720480--37720592	46	2.5	45	80	10	117	23	22	28	26	1.99
37720642--37720775	65	2.1	65	98	0	259	31	16	22	29	1.96
37722373--37722447	38	2.0	38	94	0	132	28	28	17	26	1.98
37722418--37723289	47	18.5	47	98	0	1645	35	21	12	29	1.91
37724848--37725025	27	6.6	27	84	3	205	29	28	15	26	1.96
37724869--37725024	82	1.9	81	88	3	233	29	28	15	26	1.96
37729345--37729400	24	2.3	24	75	0	58	21	19	21	37	1.94
37732322--37732354	17	1.9	17	93	0	57	6	21	0	72	1.05
37732318--37732398	42	1.9	42	82	5	101	6	23	1	69	1.19
37740584--37740626	19	2.2	20	83	4	52	39	6	0	53	1.28
37745437--37745481	23	2.0	23	90	0	72	57	4	6	31	1.44
37745530--37745829	24	12.8	24	68	14	144	54	5	6	34	1.47
37745552--37745813	69	3.8	69	76	8	194	53	5	6	34	1.49
37745619--37745812	70	2.8	68	76	8	176	54	5	6	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37745834--37745996	79	2.1	79	97	1	310	59	13	3	23	1.50
37746698--37746742	22	2.0	22	86	4	63	33	17	6	42	1.76
37746721--37746774	19	2.8	19	97	0	99	33	16	11	38	1.84
37753966--37753990	12	2.1	12	100	0	50	76	0	0	24	0.80
37759215--37759246	15	2.1	15	100	0	64	18	6	12	62	1.50
37767882--37767941	18	3.3	18	86	9	86	38	10	20	31	1.85
37767911--37768157	76	3.3	74	86	5	363	36	10	20	33	1.87
37768249--37768352	48	2.2	48	82	0	118	30	18	23	27	1.97
37768245--37768339	16	5.9	16	73	9	77	30	17	24	27	1.97
37768279--37768352	16	4.6	16	71	6	60	31	16	25	27	1.96
37771172--37771213	14	2.9	15	73	20	52	38	2	0	59	1.10
37771195--37771272	28	2.6	29	78	17	79	34	0	2	62	1.09
37773333--37773453	60	2.0	60	100	0	242	38	19	14	28	1.91
37780230--37780593	23	15.6	23	81	4	399	27	12	19	41	1.87
37780230--37780593	70	5.2	69	82	4	408	27	12	19	41	1.87
37789153--37789499	23	15.0	23	86	1	469	26	11	20	41	1.86
37789149--37789498	116	3.0	115	91	1	529	26	11	20	41	1.86
37794882--37794986	52	2.0	52	100	0	210	49	18	3	28	1.64
37794934--37795112	97	1.8	98	92	1	306	47	19	3	29	1.67
37797571--37797624	18	3.0	18	91	0	90	24	14	20	40	1.90
37804860--37804902	22	2.0	22	90	0	68	46	16	2	34	1.60
37808594--37808636	22	2.0	22	90	0	68	46	16	2	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37823922--37824469	295	1.9	294	85	1	767	30	10	20	37	1.87
37824641--37824675	14	2.5	13	86	13	52	34	0	14	51	1.42
37825023--37825081	31	1.9	31	96	0	109	32	0	3	64	1.10
37842012--37842041	14	2.2	14	94	5	53	33	0	13	53	1.40
37842489--37842681	45	4.3	45	77	2	181	28	17	16	38	1.91
37843715--37843820	54	2.0	54	88	0	158	15	28	24	32	1.95
37843898--37843954	30	1.9	30	85	0	78	29	31	19	19	1.96
37848425--37848457	16	2.1	16	88	5	50	72	6	0	21	1.05
37856506--37856550	20	2.2	20	96	0	81	35	6	17	40	1.76
37861980--37863355	344	4.0	344	99	0	2743	38	18	8	33	1.81
37868446--37868480	14	2.5	14	95	0	61	54	0	14	31	1.40
37869095--37869122	14	2.0	14	100	0	56	21	0	14	64	1.29
37869689--37869721	17	1.9	17	88	11	50	42	3	0	54	1.15
37873769--37873795	12	2.2	12	100	0	54	25	0	7	66	1.17
37876456--37876918	150	3.0	154	93	2	790	30	10	15	44	1.79
37877860--37878100	43	5.6	43	86	2	315	29	28	17	24	1.97
37877860--37878100	85	2.8	86	85	1	333	29	28	17	24	1.97
37878142--37878166	13	1.9	13	100	0	50	48	4	0	48	1.20
37878522--37878574	14	3.8	14	82	0	61	47	28	0	24	1.52
37878900--37879120	113	1.9	113	88	3	327	28	21	18	31	1.97
37878912--37879171	115	2.3	113	83	5	317	30	21	18	30	1.97
37880724--37880777	20	2.8	20	80	5	67	31	1	3	62	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37903809--37903995	49	3.6	50	82	8	207	28	19	27	24	1.98
37905075--37905101	14	1.9	14	100	0	54	51	7	0	40	1.30
37908267--37908312	20	2.3	20	88	0	74	54	2	0	43	1.12
37908272--37908320	20	2.5	20	86	3	64	53	2	0	44	1.12
37920014--37920045	15	2.1	15	94	0	55	68	15	0	15	1.21
37920996--37921039	16	2.8	15	86	6	52	45	4	4	45	1.44
37921805--37921941	9	14.6	9	70	18	61	32	0	2	63	1.14
37921817--37921940	27	4.4	27	73	22	89	32	0	2	64	1.12
37921817--37921941	56	2.2	56	80	16	143	32	0	2	64	1.12
37921865--37921942	9	8.6	9	75	17	72	32	1	1	65	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153