genome.fa.s18.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  49  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16317433--16317540	44	2.4	44	87	3	144	29	23	13	33	1.93
16326624--16326656	17	2.0	17	94	5	59	36	15	0	48	1.45
16329522--16329576	28	2.0	28	96	0	101	32	21	16	29	1.95
16331128--16331195	29	2.3	29	82	10	84	29	7	5	57	1.50
16340219--16340261	20	2.1	21	83	12	54	67	4	23	4	1.28
16348133--16348179	22	2.1	22	84	0	58	65	6	0	27	1.16
16348803--16348834	10	2.8	12	81	18	50	65	0	0	34	0.93
16350994--16351039	24	2.0	22	83	8	56	43	6	6	43	1.56
16352202--16352287	28	3.0	29	81	5	102	41	4	22	31	1.74
16352317--16352946	193	3.3	192	86	2	852	33	16	21	28	1.95
16353553--16353664	32	3.5	32	84	4	145	35	11	9	42	1.74
16353947--16353990	17	2.5	18	88	3	63	52	36	0	11	1.38
16365568--16365597	13	2.4	13	94	5	53	26	16	10	46	1.78
16370896--16370935	20	2.0	20	85	0	53	45	10	5	40	1.60
16371650--16371725	22	3.4	22	68	13	64	39	6	0	53	1.27
16374510--16374618	54	2.0	55	83	5	141	33	20	9	37	1.84
16375484--16375524	11	3.6	11	87	6	55	56	0	12	31	1.36
16379251--16379296	18	2.5	19	82	10	60	30	0	2	67	1.03
16381216--16381253	20	1.9	20	88	0	58	18	13	31	36	1.89
16383149--16383191	23	1.9	23	85	4	61	41	23	6	27	1.80
16383340--16383386	23	2.0	23	100	0	94	44	17	8	29	1.78
16384102--16384209	20	5.4	20	72	8	76	41	17	7	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16384359--16384535	23	7.6	23	80	3	194	26	18	23	32	1.97
16384336--16384535	46	4.3	46	83	5	224	26	18	23	32	1.97
16385602--16385643	3	14.0	3	100	0	84	33	0	0	66	0.92
16387038--16387084	25	2.0	25	83	8	62	27	14	4	53	1.60
16388667--16388704	19	2.0	19	85	10	51	36	15	5	42	1.70
16390784--16390823	21	1.9	21	84	0	53	32	0	7	60	1.25
16392081--16392144	21	2.8	23	76	11	69	65	1	0	32	1.02
16392110--16392168	17	3.6	16	79	16	59	66	0	0	33	0.92
16393192--16393237	3	15.3	3	100	0	92	0	32	0	67	0.91
16394652--16394702	18	2.8	18	90	0	84	50	5	19	23	1.69
16395223--16395274	25	2.0	26	88	3	79	55	1	5	36	1.35
16397352--16397397	24	1.9	24	90	0	74	43	10	26	19	1.84
16401650--16401713	28	2.3	28	94	2	112	7	35	9	46	1.65
16402104--16402137	10	3.6	9	85	14	50	85	0	8	5	0.75
16410161--16410185	9	2.8	9	100	0	50	36	0	0	64	0.94
16411057--16411099	11	4.0	11	84	6	61	20	46	4	27	1.71
16411056--16411098	21	2.0	21	90	4	68	20	46	2	30	1.63
16411585--16412135	226	2.4	226	99	0	1093	31	17	11	38	1.86
16412276--16412336	17	3.6	17	77	16	56	63	1	0	34	1.04
16414752--16414802	18	2.8	18	87	0	75	50	3	19	25	1.64
16415831--16415882	25	2.0	26	88	3	79	55	1	5	36	1.35
16417937--16417989	24	2.2	24	89	0	79	45	13	28	13	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16419610--16419684	39	2.0	37	84	10	98	62	1	1	34	1.12
16421674--16421698	13	1.9	13	100	0	50	0	8	0	92	0.40
16422516--16422540	12	2.1	12	100	0	50	8	0	32	60	1.26
16424406--16424488	32	2.6	31	76	1	85	36	10	20	32	1.87
16425869--16425893	13	1.9	13	100	0	50	40	0	4	56	1.18
16425939--16425965	5	5.4	5	100	0	54	18	0	0	81	0.69
16426142--16426185	21	2.0	22	82	4	54	56	4	2	36	1.32
16426578--16426609	13	2.5	13	94	0	55	65	0	3	31	1.08
16426634--16426680	22	2.2	21	88	3	67	48	0	2	48	1.13
16437267--16437339	26	2.8	26	87	2	112	15	26	24	34	1.94
16440142--16440501	137	2.6	138	80	10	366	25	10	11	52	1.69
16440652--16440711	25	2.3	26	78	16	63	46	0	0	53	1.00
16445318--16445354	18	2.1	18	94	0	65	32	5	18	43	1.73
16451622--16451672	26	2.0	25	88	7	77	41	1	0	56	1.10
16451627--16451678	26	2.2	23	83	13	61	48	1	0	50	1.12
16452642--16452668	8	3.4	8	100	0	54	55	0	0	44	0.99
16463166--16463205	17	2.3	18	86	4	55	20	5	22	52	1.65
16476021--16476049	9	3.3	9	90	9	51	0	10	0	89	0.48
16483723--16483904	27	6.7	27	74	7	136	17	25	19	37	1.93
16483744--16483898	54	2.9	55	73	3	154	16	25	18	39	1.91
16483694--16483898	108	1.9	108	81	4	252	17	25	18	38	1.92
16486447--16486480	17	1.9	18	94	5	61	29	2	0	67	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16486525--16486604	31	2.6	29	81	15	81	61	7	1	30	1.31
16489577--16489611	18	2.0	17	88	5	52	45	0	0	54	0.99
16489776--16489866	45	2.0	45	85	2	121	37	28	6	27	1.82
16489847--16489915	16	4.2	16	92	3	120	37	36	0	26	1.57
16489847--16489915	33	2.1	32	94	2	120	37	36	0	26	1.57
16499267--16499291	12	2.1	12	100	0	50	24	44	16	16	1.86
16500972--16501008	17	2.2	18	85	9	51	8	24	0	67	1.17
16501875--16502057	91	2.0	91	95	0	330	32	16	10	39	1.83
16504433--16504479	23	2.0	23	87	0	67	55	19	4	21	1.60
16507060--16507097	12	3.2	12	96	0	67	23	7	57	10	1.58
16507058--16507111	24	2.2	24	77	6	56	24	9	53	12	1.68
16507656--16507681	3	8.7	3	100	0	52	30	0	0	69	0.89
16507933--16508041	50	2.2	50	96	0	200	39	1	32	26	1.67
16511781--16511813	6	5.5	6	100	0	66	18	0	51	30	1.46
16511825--16511862	6	6.3	6	100	0	76	18	0	31	50	1.47
16515150--16515381	49	4.7	49	83	3	302	28	28	18	24	1.98
16515150--16515381	100	2.3	99	85	2	313	28	28	18	24	1.98
16518845--16519118	94	2.9	95	81	8	324	28	20	28	22	1.99
16518848--16519118	47	5.7	49	75	11	251	28	20	28	22	1.99
16519979--16520071	42	2.2	42	94	0	168	18	20	32	29	1.96
16523925--16523962	19	1.9	19	89	5	58	47	0	2	50	1.15
16528648--16528694	14	2.9	18	71	28	52	57	0	4	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16530693--16530743	25	2.0	25	92	0	84	39	5	17	37	1.74
16530696--16530743	12	3.9	12	75	5	51	39	4	18	37	1.70
16535369--16535419	25	2.0	25	92	0	84	39	5	17	37	1.74
16535372--16535419	12	3.9	12	75	5	51	39	4	18	37	1.70
16536465--16536490	11	2.4	11	100	0	52	46	15	7	30	1.74
16539295--16539355	21	2.8	21	82	5	59	32	19	26	21	1.97
16539309--16539355	21	2.1	21	92	7	76	31	23	25	19	1.98
16539316--16539368	23	2.4	23	81	6	56	30	20	24	24	1.99
16540193--16540237	23	2.0	23	82	8	56	51	4	0	44	1.21
16540477--16540526	16	3.2	16	78	13	59	58	0	6	36	1.23
16540457--16540526	16	4.2	17	75	17	58	57	0	5	37	1.23
16540631--16540692	30	2.1	27	82	11	70	45	1	3	50	1.27
16542418--16542453	13	2.8	14	84	16	51	27	25	0	47	1.52
16542405--16542445	18	2.2	19	87	12	59	29	24	0	46	1.53
16542545--16542641	27	3.6	27	71	25	89	41	38	3	17	1.65
16542960--16543006	15	3.1	15	81	0	67	48	12	2	36	1.53
16543924--16543987	32	2.0	32	85	8	87	46	7	0	45	1.32
16544501--16544529	13	2.1	14	93	6	51	44	3	0	51	1.18
16552234--16552438	100	2.0	100	85	1	277	32	25	17	23	1.97
16554383--16554420	18	2.1	18	100	0	76	21	23	10	44	1.83
16555704--16555746	20	2.2	20	95	0	77	53	6	0	39	1.28
16562531--16562638	26	4.2	26	93	0	189	36	24	7	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16565504--16565547	21	2.1	21	100	0	88	38	9	18	34	1.82
16569524--16569559	15	2.4	15	90	0	54	58	0	11	30	1.33
16570050--16570094	16	2.8	16	80	12	56	53	0	15	31	1.43
16570435--16570477	20	2.0	22	86	8	63	44	0	25	30	1.55
16571129--16571197	29	2.4	29	90	0	102	37	10	27	24	1.88
16571190--16571460	65	4.1	65	76	7	228	35	10	22	32	1.88
16571190--16571439	98	2.6	98	84	1	304	34	10	22	33	1.88
16571190--16571426	33	7.2	33	77	7	205	34	10	21	33	1.87
16574367--16574396	13	2.2	13	94	5	51	86	0	13	0	0.57
16577822--16577859	6	6.2	6	90	6	58	81	0	15	2	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153