genome.fa.s18.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  99  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31251589--31252987	708	2.0	708	82	3	1722	31	21	14	32	1.93
31251589--31253000	354	4.0	354	82	2	1543	31	21	14	32	1.93
31254210--31254238	15	1.9	15	100	0	58	31	6	13	48	1.69
31254536--31254583	19	2.4	19	80	13	53	22	31	18	27	1.97
31266827--31266855	15	1.9	15	100	0	58	31	6	13	48	1.69
31272026--31272062	9	4.1	9	85	0	56	45	10	10	32	1.74
31289369--31289946	110	5.3	110	96	0	1014	33	18	14	32	1.92
31290481--31290546	20	3.3	20	68	6	53	48	0	13	37	1.43
31291616--31291659	14	3.1	14	87	9	63	81	0	13	4	0.83
31291621--31291655	17	2.1	17	88	0	52	85	0	11	2	0.69
31294548--31294679	47	2.7	47	82	8	156	41	20	25	12	1.88
31296643--31296769	46	3.0	42	85	11	172	26	24	2	46	1.65
31296643--31296748	46	2.4	46	93	4	182	29	26	2	41	1.70
31308156--31308189	15	2.3	15	100	0	68	17	17	5	58	1.57
31308993--31309035	20	2.2	20	86	0	59	44	20	6	27	1.77
31317066--31317096	15	2.1	15	93	0	53	25	0	6	67	1.14
31317072--31317105	15	2.3	15	89	0	50	29	0	5	64	1.17
31319005--31319038	16	2.0	17	88	11	52	23	5	14	55	1.61
31319005--31319039	18	2.0	18	88	5	54	22	5	14	57	1.59
31325086--31325176	44	2.0	44	85	6	121	34	4	27	34	1.77
31325323--31325364	15	2.9	15	82	10	52	52	0	0	47	1.00
31325429--31325475	16	3.0	16	78	12	53	51	2	0	46	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31325574--31325608	18	2.0	17	88	5	52	54	0	0	45	0.99
31325314--31325729	120	3.5	120	95	0	735	49	5	2	43	1.38
31325711--31325878	47	3.7	46	70	18	143	47	3	2	45	1.35
31325668--31325952	91	3.0	93	86	6	346	48	3	3	45	1.34
31325770--31325912	44	3.2	43	70	20	130	48	2	2	46	1.28
31325745--31325952	91	2.3	91	94	0	353	46	3	3	46	1.37
31325792--31325933	47	3.1	47	69	17	143	50	4	2	43	1.33
31329230--31329548	96	3.3	96	100	0	638	29	15	11	43	1.82
31329371--31329518	47	3.1	47	62	21	117	33	16	9	39	1.81
31334308--31334348	21	2.0	20	85	4	55	43	12	12	31	1.79
31334679--31335053	187	2.0	187	94	0	651	36	14	14	35	1.86
31335836--31335912	22	3.4	22	67	13	66	36	25	2	35	1.70
31335823--31335917	46	2.1	46	95	0	172	42	23	2	32	1.66
31339811--31339905	46	2.1	46	93	0	163	41	23	2	33	1.66
31344939--31344980	23	1.9	21	90	9	66	54	11	9	23	1.66
31347917--31347979	32	2.0	32	96	0	117	38	6	20	34	1.78
31348575--31348947	122	3.0	122	95	1	638	31	14	21	32	1.93
31351958--31352431	115	4.1	115	96	0	849	44	6	8	40	1.63
31352425--31353000	23	24.1	23	72	17	335	26	0	24	48	1.55
31352614--31352860	15	16.1	15	66	22	122	25	0	25	49	1.51
31352596--31352896	52	5.9	52	82	14	369	25	0	24	49	1.50
31352426--31353003	166	3.5	161	72	18	184	26	0	24	48	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31352634--31352851	98	2.3	89	76	21	216	25	0	25	49	1.51
31352459--31353000	202	2.8	193	81	11	612	25	0	24	48	1.55
31352874--31353006	68	2.0	68	90	3	214	24	1	28	45	1.62
31353046--31353093	25	1.9	25	100	0	96	39	14	0	45	1.45
31353037--31353093	25	2.3	26	90	3	82	45	12	0	42	1.41
31353524--31353561	18	2.1	18	95	0	67	39	7	28	23	1.83
31354212--31354236	7	3.6	7	100	0	50	60	12	0	28	1.32
31354407--31354444	20	1.9	20	84	10	51	55	7	2	34	1.43
31355337--31355379	11	3.8	11	78	6	50	60	0	0	39	0.97
31355386--31355416	11	2.8	11	90	0	53	51	6	22	19	1.69
31355424--31355459	11	3.2	11	92	4	54	41	0	38	19	1.52
31362305--31362336	5	6.6	5	92	7	57	62	0	0	37	0.95
31362849--31362931	17	4.4	19	70	19	66	62	2	2	32	1.21
31362849--31362931	10	8.8	9	71	18	62	62	2	2	32	1.21
31363615--31363685	32	2.3	32	90	4	110	45	9	12	32	1.75
31366222--31366300	29	2.7	30	82	13	110	30	30	13	25	1.94
31366439--31366517	29	2.7	30	82	13	110	30	30	13	25	1.94
31366116--31366532	217	1.9	217	98	0	798	30	24	14	29	1.95
31369115--31369154	21	1.9	21	90	10	64	40	5	5	50	1.46
31369120--31369161	11	3.8	11	78	9	50	38	4	4	52	1.44
31369115--31369164	21	2.3	21	80	12	57	40	4	4	52	1.39
31371037--31371096	22	2.7	23	89	5	79	35	18	21	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31371047--31371096	22	2.3	22	96	0	91	32	20	22	26	1.98
31387521--31387550	15	1.9	16	93	6	53	26	10	3	60	1.45
31394247--31394289	20	2.2	20	95	0	77	53	2	13	30	1.53
31398551--31398582	15	2.1	15	94	0	55	56	28	6	9	1.55
31408802--31408917	39	3.0	39	87	0	160	35	10	12	42	1.76
31412196--31412232	16	2.4	15	82	8	56	81	2	13	2	0.92
31415922--31415962	19	2.0	20	86	9	57	12	0	7	80	0.90
31418133--31418248	39	3.0	39	88	0	169	34	11	12	42	1.78
31424009--31424080	28	2.6	28	97	0	135	29	25	12	33	1.92
31430807--31430879	37	1.9	37	86	5	101	43	4	5	46	1.45
31432937--31433203	105	2.6	105	92	2	432	29	30	20	19	1.97
31433956--31434008	19	2.8	19	77	2	63	37	0	1	60	1.08
31435079--31435176	40	2.6	38	72	4	90	31	26	17	24	1.97
31436187--31436237	15	3.4	15	72	20	52	47	1	1	49	1.24
31437252--31437289	3	12.7	3	100	0	76	31	0	0	68	0.90
31445069--31445122	23	2.4	23	87	6	76	59	7	1	31	1.36
31445072--31445142	3	23.3	3	74	8	63	61	5	1	30	1.27
31445429--31445608	90	2.0	91	98	1	353	25	22	31	21	1.98
31445697--31445734	11	3.2	12	88	11	60	47	0	52	0	1.00
31446204--31446228	8	3.1	8	100	0	50	24	12	52	12	1.72
31456234--31456333	33	3.2	30	89	9	155	30	4	15	51	1.61
31459889--31460175	69	4.2	68	78	7	222	18	19	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31459928--31460201	69	4.0	69	77	3	232	20	21	22	35	1.96
31460220--31460306	45	2.0	44	83	0	102	37	11	19	29	1.87
31466787--31466824	17	2.2	17	86	9	51	44	18	0	36	1.50
31466750--31466919	89	1.9	89	88	0	259	40	16	12	30	1.86
31468036--31468061	3	8.7	3	100	0	52	30	0	0	69	0.89
31468554--31468601	21	2.3	21	88	0	69	37	2	8	52	1.44
31468554--31468615	21	2.8	21	82	7	61	40	1	8	50	1.42
31471860--31471954	50	1.9	50	84	0	127	32	26	21	20	1.97
31471910--31472055	63	2.3	63	86	0	202	32	30	18	19	1.96
31476691--31476788	12	8.1	12	67	20	53	51	2	4	42	1.32
31476691--31476788	17	5.8	17	68	20	62	51	2	4	42	1.32
31481960--31484040	265	7.9	265	83	2	2476	29	16	16	36	1.91
31481960--31484040	790	2.6	789	85	3	2657	29	16	16	36	1.91
31488210--31488242	17	1.9	17	93	0	57	48	0	12	39	1.40
31488233--31488309	9	8.7	9	81	7	86	44	0	2	53	1.14
31488244--31488309	13	4.9	13	75	5	69	43	0	1	54	1.09
31495677--31495709	16	2.1	16	100	0	66	24	18	12	45	1.83
31497077--31497159	26	3.3	25	78	8	80	39	18	19	22	1.92
31500759--31500825	28	2.3	29	87	7	91	65	0	0	34	0.93
31500788--31500816	11	2.5	12	88	11	51	58	0	0	41	0.98
31505083--31505125	22	2.0	21	81	4	50	60	0	0	39	0.97
31505105--31505157	27	1.9	28	84	3	72	50	1	3	43	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31508033--31508102	18	3.9	18	78	0	77	34	30	10	25	1.89
31508032--31508102	36	2.0	36	85	0	97	33	30	9	25	1.88
31513561--31513603	8	5.5	8	83	5	52	88	4	4	2	0.70
31514652--31514699	21	2.3	21	82	7	62	14	18	6	60	1.55
31516460--31518162	850	2.0	850	94	0	2971	32	16	20	30	1.94
31520105--31520130	11	2.4	11	100	0	52	34	7	0	57	1.27
31520134--31520175	13	3.2	13	80	16	50	21	0	4	73	1.01
31523989--31524038	20	2.5	20	83	9	66	62	4	0	34	1.14
31524113--31524154	19	2.1	21	82	8	52	54	9	2	33	1.46
31523946--31524176	120	1.9	120	80	3	268	51	13	2	32	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153