genome.fa.s18.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  139  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43608059--43608551	126	3.9	125	86	2	650	30	22	20	26	1.98
43608424--43608718	148	2.0	140	85	6	385	29	21	20	28	1.98
43610576--43610612	18	2.1	18	89	0	56	48	10	10	29	1.72
43610861--43611005	72	2.0	76	84	5	199	25	42	0	31	1.55
43615450--43615485	10	3.7	10	85	7	56	44	2	0	52	1.15
43620053--43620090	16	2.5	15	87	8	58	26	0	7	65	1.19
43620311--43620335	13	1.9	13	100	0	50	36	0	8	56	1.29
43632544--43632721	46	3.9	46	87	5	270	26	17	25	30	1.97
43638221--43638288	34	2.0	34	97	0	127	25	23	19	32	1.97
43638229--43638322	34	2.8	32	85	7	109	29	25	18	26	1.98
43645361--43645428	34	2.0	34	85	5	93	26	19	16	38	1.92
43649931--43649970	19	2.1	19	95	0	71	32	2	5	60	1.32
43651826--43651887	26	2.4	26	80	0	79	22	24	27	25	2.00
43653469--43653493	11	2.3	11	100	0	50	28	0	8	64	1.22
43654869--43654899	16	1.9	16	93	0	53	70	9	9	9	1.33
43659040--43659094	28	2.0	28	96	0	101	23	14	23	38	1.92
43667280--43667463	27	6.8	26	81	2	163	40	18	16	23	1.90
43667278--43667465	54	3.5	54	82	1	216	40	18	17	23	1.90
43667280--43667495	81	2.7	81	75	8	197	40	19	17	22	1.91
43667416--43667639	81	2.8	81	78	8	242	37	23	17	20	1.94
43667486--43667654	27	6.3	27	76	8	130	39	21	18	20	1.93
43667456--43667654	54	3.7	52	78	6	177	38	21	19	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43667729--43667771	11	3.7	11	76	11	50	16	6	25	51	1.69
43667673--43667781	24	4.5	24	87	4	130	25	7	20	46	1.76
43667850--43667915	27	2.5	26	82	9	71	19	24	24	31	1.98
43667953--43668091	32	4.4	32	89	0	181	19	20	20	39	1.93
43668238--43668279	21	2.0	21	81	9	50	11	2	45	40	1.54
43669078--43669111	12	2.8	12	86	0	50	29	47	14	8	1.75
43671310--43671344	16	2.2	16	94	0	61	80	0	11	8	0.92
43673769--43673831	20	3.0	23	84	13	75	1	28	0	69	0.97
43673799--43673835	4	9.5	4	94	5	67	0	24	0	75	0.80
43673777--43673842	12	5.3	12	79	16	57	1	27	0	71	0.95
43674388--43674588	63	3.2	63	76	7	203	26	18	26	28	1.98
43675214--43675256	16	2.5	18	81	7	54	23	11	11	53	1.69
43676635--43676695	30	2.0	30	90	6	97	34	21	11	32	1.89
43677773--43677850	30	2.5	31	85	6	95	30	6	12	50	1.66
43677924--43678008	9	9.3	9	77	15	70	38	4	1	55	1.29
43677950--43678012	19	3.3	20	77	16	71	36	4	0	58	1.19
43677935--43678009	38	2.0	38	81	5	89	38	5	1	54	1.31
43677924--43678008	27	3.1	27	75	12	84	38	4	1	55	1.29
43679534--43679781	50	4.7	53	77	6	202	27	17	28	27	1.98
43681862--43681892	16	1.9	16	93	0	53	41	9	0	48	1.36
43686495--43686604	56	1.9	57	96	1	204	37	21	7	33	1.81
43686798--43686913	57	2.0	57	98	0	223	28	26	7	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43686944--43686987	19	2.2	20	84	4	54	25	4	6	63	1.38
43697960--43698136	42	4.2	42	77	1	158	42	19	20	16	1.89
43697960--43698129	84	2.0	84	83	0	214	42	19	21	16	1.89
43704232--43704273	20	2.1	20	95	0	75	30	14	7	47	1.71
43708424--43708454	11	2.9	11	95	4	55	6	9	6	77	1.12
43713048--43713085	20	1.9	20	88	0	58	50	13	7	28	1.69
43713069--43713108	14	2.9	14	84	0	53	42	17	7	32	1.77
43719339--43719436	26	4.0	26	74	16	93	45	0	1	53	1.07
43719368--43719409	16	2.7	16	81	3	50	52	0	2	45	1.13
43719325--43719447	26	5.1	24	71	18	78	47	1	1	49	1.21
43720771--43720795	11	2.3	11	100	0	50	40	28	24	8	1.83
43722275--43722372	32	3.1	32	69	12	87	50	1	9	39	1.41
43734287--43734352	27	2.4	27	79	0	87	25	30	24	19	1.98
43735512--43735551	14	2.8	14	88	3	53	70	0	15	15	1.18
43736958--43737060	54	1.9	53	92	2	170	15	33	26	24	1.95
43744735--43744764	6	5.0	6	100	0	60	16	0	0	83	0.65
43751887--43752039	73	2.1	72	85	1	207	29	14	30	26	1.95
43766095--43766139	20	2.2	20	80	0	54	8	2	13	75	1.13
43770460--43770533	38	1.9	38	100	0	148	35	13	18	32	1.90
43774740--43774862	32	3.8	32	84	4	149	39	19	17	22	1.92
43775037--43775142	24	4.4	24	84	0	113	42	21	8	27	1.82
43775167--43775283	27	4.4	27	87	1	155	23	22	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43775167--43775337	54	3.2	54	78	5	177	21	21	19	37	1.94
43775167--43775367	27	7.5	26	79	9	138	20	21	19	38	1.94
43775221--43775376	80	1.9	80	83	3	197	20	20	17	41	1.91
43775245--43775389	27	5.4	26	78	10	123	20	20	16	42	1.89
43775245--43775389	54	2.7	53	75	10	143	20	20	16	42	1.89
43777374--43777417	23	1.9	23	100	0	88	45	4	13	36	1.64
43781940--43782001	19	3.1	19	76	13	70	46	6	20	25	1.74
43781968--43782008	15	2.7	15	88	7	57	43	7	21	26	1.79
43781968--43782008	7	5.6	7	85	8	55	43	7	21	26	1.79
43796786--43796846	20	3.2	18	78	19	61	77	3	6	13	1.09
43796786--43796846	6	9.3	6	74	13	50	77	3	6	13	1.09
43799988--43800345	100	3.6	100	99	0	707	34	30	13	22	1.92
43801186--43801230	19	2.3	20	85	14	60	77	0	4	17	0.92
43813623--43813660	17	2.2	17	90	0	58	23	36	21	18	1.95
43814720--43814764	21	2.0	22	83	8	56	33	26	6	33	1.83
43815396--43815479	25	3.4	25	81	3	107	30	21	16	30	1.95
43815966--43816073	23	4.7	23	69	0	81	16	16	22	44	1.86
43815970--43816077	46	2.3	46	91	0	171	15	16	25	42	1.88
43818388--43818499	25	4.5	25	74	8	66	18	25	20	34	1.96
43818419--43818537	25	4.7	25	73	11	82	21	26	21	31	1.98
43818428--43818524	50	1.9	50	83	4	124	21	27	20	29	1.98
43818443--43818545	50	2.1	50	80	7	111	21	26	22	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43826494--43826550	20	2.7	22	69	17	57	19	28	3	49	1.65
43826752--43826789	8	4.6	8	90	6	58	76	0	0	23	0.79
43827272--43827323	23	2.3	23	86	0	68	28	7	21	42	1.80
43827323--43828463	50	22.8	50	86	0	1539	23	20	23	32	1.98
43827325--43828458	150	7.6	150	95	0	1925	23	20	23	32	1.98
43829547--43829636	47	1.9	47	81	0	108	30	25	15	28	1.96
43829766--43829812	6	7.7	6	86	13	51	6	8	0	85	0.75
43829766--43829806	19	2.2	19	86	8	57	4	9	0	85	0.73
43830753--43830792	6	7.2	6	78	16	50	0	22	0	77	0.77
43830753--43830792	11	3.6	11	93	0	71	0	22	0	77	0.77
43830820--43830878	13	4.8	12	76	23	52	22	1	10	66	1.31
43834985--43835015	16	1.9	16	100	0	62	19	6	22	51	1.69
43834995--43835052	28	2.1	28	100	0	116	32	3	20	43	1.69
43835511--43835568	25	2.3	25	78	0	71	17	22	18	41	1.90
43835555--43835665	50	2.2	50	80	7	118	25	24	18	31	1.98
43839565--43840540	114	8.6	113	86	2	1228	27	19	25	27	1.99
43839565--43840540	344	2.9	339	86	3	1316	27	19	25	27	1.99
43840545--43840627	41	2.0	41	88	2	123	21	18	32	27	1.96
43840867--43840912	22	2.1	22	83	0	56	23	0	36	39	1.55
43840924--43840974	23	2.2	24	85	3	68	17	5	45	31	1.72
43841155--43841198	15	3.0	15	83	3	54	34	0	29	36	1.58
43841237--43841296	22	2.8	23	73	16	58	21	0	38	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43845405--43845558	28	5.5	28	91	3	213	25	12	28	32	1.93
43851003--43851049	22	2.1	22	84	11	60	19	38	2	40	1.63
43853260--43853340	9	9.0	9	73	15	69	44	16	1	38	1.55
43853258--43853336	16	5.0	16	77	13	83	44	15	1	39	1.54
43853341--43853394	17	3.1	18	79	17	69	38	0	1	59	1.08
43853349--43853378	15	2.0	15	93	0	51	40	0	3	56	1.16
43853364--43853402	19	2.0	20	95	5	71	43	0	0	56	0.99
43853404--43853467	23	3.0	22	68	21	55	48	21	0	29	1.51
43853521--43853576	24	2.5	21	76	15	67	50	21	1	26	1.59
43853535--43853579	12	3.8	12	90	0	72	51	17	2	28	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153