genome.fa.s18.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  114  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35907823--35907902	25	3.2	25	66	16	74	55	7	8	28	1.58
35907800--35907902	51	2.0	51	100	0	206	51	7	11	29	1.66
35912990--35913031	19	2.2	20	91	4	68	40	21	0	38	1.53
35917242--35917460	27	8.2	27	83	6	257	44	21	14	20	1.86
35917242--35917460	53	4.1	54	81	6	250	44	21	14	20	1.86
35917242--35917493	80	3.1	80	83	8	298	44	21	14	20	1.86
35923346--35923392	24	2.0	24	91	0	76	27	6	21	44	1.76
35923346--35923406	24	2.5	24	83	0	59	26	8	21	44	1.80
35923522--35923587	26	2.5	26	80	0	78	21	19	24	34	1.96
35923581--35923670	32	2.8	33	80	11	105	22	17	20	40	1.92
35923610--35923671	32	1.9	32	93	6	108	24	19	17	38	1.93
35936910--35937002	6	15.3	6	75	6	62	22	5	2	69	1.19
35936910--35936986	19	4.2	18	78	9	75	22	6	1	70	1.18
35936892--35936999	36	3.0	37	78	10	109	24	6	2	66	1.28
35936910--35936999	13	7.4	12	75	18	62	23	5	2	68	1.21
35936920--35936998	19	4.3	19	74	6	63	24	6	2	67	1.27
35936910--35937010	12	8.6	11	76	20	73	22	4	1	70	1.17
35938961--35939008	24	2.0	24	84	12	62	18	6	6	68	1.32
35953965--35954049	42	2.0	42	93	0	143	22	16	24	36	1.94
35959011--35959054	15	2.8	16	80	16	56	43	0	2	54	1.12
35970472--35970500	13	2.2	13	100	0	58	34	0	24	41	1.55
35972560--35972591	14	2.1	16	88	11	50	31	0	3	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35973934--35974002	10	7.3	10	70	23	51	56	0	4	39	1.19
35973934--35974055	19	6.6	18	68	16	54	55	0	3	40	1.22
35973924--35974055	47	2.8	47	74	17	112	55	2	3	39	1.28
35974100--35974168	30	2.3	30	85	7	86	65	1	5	27	1.24
35974474--35974548	20	3.7	19	75	15	62	56	0	5	38	1.22
35974488--35974548	31	1.9	32	83	3	79	59	0	4	36	1.19
35974488--35974552	11	6.2	11	70	8	55	60	0	4	35	1.18
35974500--35974573	20	3.6	21	78	7	71	59	1	4	35	1.25
35976794--35976823	14	2.1	14	93	0	51	63	0	0	36	0.95
35979503--35979577	19	3.8	19	91	6	114	36	18	10	34	1.86
35979923--35980303	44	9.0	42	76	12	300	30	26	15	27	1.96
35980067--35980322	89	2.9	86	84	8	325	30	25	14	29	1.95
35980047--35980321	133	2.1	133	93	0	478	30	26	14	29	1.95
35980067--35980322	44	5.8	44	86	6	356	30	25	14	29	1.95
35980330--35980638	88	3.5	88	92	1	503	23	26	23	25	2.00
35980373--35980604	44	5.3	44	70	4	198	25	28	23	22	1.99
35980643--35981286	88	7.3	88	90	0	948	25	26	22	25	2.00
35980879--35981283	44	9.2	44	69	11	202	26	26	23	23	2.00
35983998--35984059	31	2.0	31	93	0	106	19	19	22	38	1.93
35986995--35987068	19	3.8	19	91	7	112	35	18	12	33	1.88
35987825--35987895	37	1.9	36	83	8	90	38	5	5	50	1.49
35987862--35987923	24	2.6	23	78	16	72	40	11	1	46	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35987950--35988058	50	2.2	49	91	3	175	44	12	0	42	1.42
35989763--35989797	16	2.2	16	89	0	52	22	14	20	42	1.88
35992246--35992305	7	8.4	7	78	15	61	81	1	15	1	0.85
35992254--35992299	6	7.8	6	81	13	60	82	0	17	0	0.67
35992243--35992299	12	5.1	11	81	8	62	84	1	14	0	0.71
35992809--35992845	15	2.6	15	87	8	51	67	0	18	13	1.23
35994079--35994305	44	5.2	44	63	8	138	25	17	26	30	1.97
35994387--35994618	44	5.3	44	63	10	132	25	22	23	28	1.99
35994076--35994688	88	7.0	88	91	0	902	27	19	24	28	1.99
35995042--35995334	126	2.3	125	81	10	310	30	19	21	29	1.97
35995720--35995759	21	1.9	21	84	0	53	15	50	20	15	1.79
35995876--35995915	17	2.2	18	86	8	55	80	0	12	7	0.91
35996591--35996648	3	18.3	3	80	16	64	29	0	1	68	0.99
35996591--35996649	7	8.7	7	87	12	79	28	0	1	69	0.98
36002121--36002150	3	10.0	3	100	0	60	33	0	0	66	0.92
36002632--36002691	9	6.2	9	81	14	75	25	10	30	35	1.88
36002633--36002691	31	1.9	31	96	0	109	25	10	30	33	1.89
36002754--36002812	28	2.1	28	80	0	64	40	6	16	35	1.76
36005826--36005911	28	3.0	28	83	11	102	30	19	5	44	1.74
36006001--36006067	22	3.0	20	73	16	53	41	26	2	28	1.70
36006791--36006821	9	3.4	9	90	0	53	0	9	3	87	0.66
36006792--36006828	19	1.9	19	89	10	58	0	13	2	83	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36012050--36012097	18	2.6	18	86	3	60	33	4	8	54	1.50
36012064--36012102	18	2.2	18	95	0	69	28	2	10	58	1.44
36013567--36013614	17	2.7	18	83	9	62	64	2	6	27	1.28
36016078--36016256	50	3.6	50	77	6	168	28	21	26	23	1.99
36018882--36018911	16	1.9	16	93	6	53	46	0	13	40	1.43
36019074--36019140	28	2.4	29	85	5	84	23	14	13	47	1.80
36019357--36019634	123	2.2	125	96	2	508	29	15	21	34	1.93
36019873--36019909	16	2.3	16	100	0	74	45	13	18	21	1.84
36022790--36022960	29	5.9	29	95	3	308	28	0	26	45	1.54
36022790--36022960	59	2.9	59	97	1	319	28	0	26	45	1.54
36025272--36025315	22	2.2	20	88	12	63	63	0	0	36	0.95
36025265--36025329	32	2.1	30	91	5	103	61	0	0	38	0.96
36025364--36025435	22	3.3	22	92	3	119	36	1	33	29	1.66
36029213--36029280	25	2.8	24	76	10	57	45	1	5	47	1.36
36031913--36032035	64	1.9	64	80	3	140	24	19	20	35	1.95
36033758--36033801	23	1.9	23	85	0	61	43	6	11	38	1.67
36037796--36037852	28	2.0	28	93	0	96	24	12	17	45	1.83
36040099--36040167	35	1.9	36	91	2	113	26	4	18	50	1.65
36045740--36045806	34	1.9	35	90	3	109	46	13	8	31	1.74
36047125--36047165	3	13.7	3	94	0	73	31	2	0	65	1.05
36051677--36051730	27	2.1	27	82	6	67	11	31	1	55	1.45
36065089--36065127	13	2.9	14	96	3	71	23	15	0	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36065166--36065209	12	3.6	12	78	6	52	13	9	9	68	1.40
36065394--36065427	16	2.1	16	88	0	50	73	5	8	11	1.24
36071230--36071296	34	1.9	35	87	3	100	31	8	14	44	1.76
36073812--36073860	25	2.1	24	88	11	75	36	12	24	26	1.91
36074503--36074564	30	2.1	30	90	0	97	25	4	12	56	1.56
36085170--36085218	20	2.5	20	86	6	64	61	2	4	32	1.26
36086438--36086606	63	2.7	62	80	5	196	25	26	20	28	1.99
36087595--36087652	10	6.1	9	80	11	71	60	0	0	39	0.97
36087593--36087647	19	2.9	18	81	7	65	60	0	0	40	0.97
36087597--36087654	29	2.0	29	87	9	84	60	0	0	39	0.97
36089375--36089413	20	1.9	20	84	5	51	48	2	5	43	1.38
36093359--36093384	13	2.0	13	100	0	52	38	15	7	38	1.76
36102020--36102045	13	2.0	13	100	0	52	38	15	7	38	1.76
36103787--36103824	15	2.4	16	82	8	51	23	31	0	44	1.54
36105223--36105253	16	1.9	16	93	0	53	67	3	0	29	1.06
36106556--36106590	18	1.9	18	88	0	52	62	0	0	37	0.95
36106540--36106590	10	5.3	10	77	13	54	60	0	1	37	1.08
36106857--36106918	9	6.6	9	73	15	54	27	3	1	67	1.15
36106858--36106946	10	9.2	10	74	12	71	29	3	1	66	1.15
36106858--36106939	19	4.2	19	75	14	69	28	3	1	67	1.15
36107014--36107221	93	2.3	89	78	11	237	33	10	18	37	1.85
36107310--36107370	10	6.2	10	74	11	54	22	11	3	62	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36107315--36107373	29	2.0	29	100	0	118	23	10	3	62	1.42
36115746--36115858	44	2.7	41	72	14	95	30	23	16	30	1.96
36115835--36116093	44	5.7	44	73	13	218	28	21	18	31	1.97
36115779--36116061	142	2.0	142	94	0	494	27	20	18	33	1.96
36134373--36134402	7	4.4	7	91	8	53	26	0	0	73	0.84
36134427--36134485	32	1.9	31	86	13	86	42	11	1	44	1.51
36134574--36134608	17	2.1	17	88	0	52	37	8	0	54	1.31
36135779--36135804	13	2.0	13	100	0	52	30	7	7	53	1.57
36136595--36136619	8	3.1	8	100	0	50	64	0	0	36	0.94
36138708--36138733	9	2.9	9	100	0	52	53	0	23	23	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153