genome.fa.s18.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  33  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11424220--11424274	28	2.0	28	89	7	85	27	3	1	67	1.17
11425230--11425354	62	2.0	62	98	0	241	17	23	24	35	1.95
11427917--11428084	30	5.6	30	82	4	164	35	25	4	35	1.75
11427918--11428029	59	1.9	59	90	3	181	37	25	2	34	1.70
11427917--11428084	89	1.9	89	83	6	223	35	25	4	35	1.75
11428405--11428463	18	3.3	18	74	11	59	76	5	18	0	0.97
11428563--11428636	4	19.0	4	74	22	52	74	0	25	0	0.82
11428565--11428641	14	5.9	13	81	15	81	76	0	23	0	0.78
11428564--11428638	10	7.3	10	80	16	82	76	0	24	0	0.80
11429262--11429366	19	5.6	18	66	24	56	38	14	9	38	1.78
11429265--11429322	17	3.4	17	70	13	55	36	13	12	37	1.82
11429319--11429367	20	2.4	21	83	10	66	46	12	6	34	1.66
11429468--11429507	20	2.1	20	86	9	57	47	10	10	32	1.70
11429486--11430039	18	31.3	18	72	17	121	31	12	9	45	1.75
11429499--11430044	17	30.8	18	76	9	464	31	12	9	46	1.74
11429486--11430044	36	15.8	34	75	11	337	31	12	9	45	1.75
11429468--11430044	54	10.8	53	78	9	409	32	12	9	45	1.75
11438453--11439288	76	10.9	76	85	6	1030	26	17	21	34	1.95
11438453--11439281	304	2.7	304	92	1	1322	27	16	21	34	1.95
11439412--11439547	30	4.6	30	77	7	143	33	23	5	37	1.77
11439412--11439547	59	2.3	60	82	6	161	33	23	5	37	1.77
11439852--11439919	35	1.9	35	85	11	95	75	8	14	1	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11439868--11439919	15	3.3	15	76	21	52	76	3	17	1	1.02
11440029--11440106	16	5.0	15	72	12	68	75	0	23	1	0.87
11440029--11440098	4	17.0	4	77	16	63	74	0	25	0	0.82
11440031--11440096	26	2.5	26	76	13	73	74	0	25	0	0.82
11440030--11440101	11	6.3	11	74	15	65	76	0	23	0	0.79
11440141--11440185	17	2.6	17	82	0	63	24	46	22	6	1.75
11440739--11440796	17	3.4	17	70	13	55	36	13	12	37	1.82
11440959--11441428	18	26.3	18	71	15	95	32	12	9	45	1.74
11440960--11441538	35	16.3	34	75	13	365	31	12	9	46	1.74
11440959--11441536	71	8.1	70	74	10	401	31	12	9	46	1.74
11440973--11441549	17	32.5	18	74	10	447	31	11	9	46	1.73
11443246--11443283	18	2.2	18	86	9	53	68	2	7	21	1.28
11456489--11456526	19	2.0	19	94	0	67	81	0	13	5	0.85
11456488--11456537	24	2.0	25	84	7	66	76	2	14	8	1.10
11456827--11456866	21	1.9	21	84	0	53	32	12	0	55	1.38
11461273--11461422	41	3.7	41	92	1	239	23	28	19	28	1.98
11461272--11461471	82	2.4	82	83	9	241	24	27	19	29	1.98
11461668--11461741	34	2.2	32	79	9	78	39	18	2	39	1.65
11465579--11465622	12	3.8	12	82	14	56	43	0	0	56	0.99
11465579--11465629	22	2.3	23	80	16	63	43	0	0	56	0.99
11469820--11470168	123	2.8	124	87	1	513	28	16	21	33	1.95
11472796--11473039	116	2.1	116	93	1	418	45	7	8	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11473034--11473195	23	7.1	23	78	13	174	26	0	23	50	1.50
11473034--11473197	45	3.6	46	79	12	176	26	0	23	50	1.50
11473180--11473218	15	2.6	15	100	0	78	17	0	28	53	1.44
11473193--11473233	22	1.9	21	95	5	73	19	0	26	53	1.45
11473367--11473785	23	18.1	23	78	11	378	28	0	22	48	1.55
11473660--11473689	14	2.2	14	94	5	53	20	0	30	50	1.49
11473703--11473764	22	2.9	21	83	9	81	27	0	25	46	1.53
11473681--11473801	45	2.7	45	81	13	133	28	0	23	47	1.51
11473673--11473801	23	5.8	22	69	15	86	28	0	23	48	1.51
11473830--11473877	25	1.9	25	95	0	87	39	12	0	47	1.41
11473821--11473879	25	2.2	26	79	11	66	45	10	0	44	1.37
11474877--11474901	7	3.6	7	100	0	50	60	12	0	28	1.32
11475072--11475109	20	1.9	20	84	10	51	55	7	2	34	1.43
11476585--11476609	12	2.1	12	100	0	50	60	8	0	32	1.26
11477839--11477897	29	2.0	29	100	0	118	23	6	16	52	1.68
11487955--11487979	6	4.2	6	100	0	50	0	36	32	32	1.58
11488050--11488099	25	2.0	25	88	0	73	20	38	12	30	1.88
11489852--11489882	16	1.9	16	100	0	62	51	0	0	48	1.00
11501313--11501371	30	2.0	30	96	0	109	37	10	15	37	1.81
11512561--11512635	27	2.6	30	79	16	86	45	6	2	45	1.43
11515434--11515509	38	2.0	38	97	0	143	28	25	11	34	1.91
11516906--11516930	12	2.1	12	100	0	50	24	24	0	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11519641--11519771	39	3.4	38	77	6	129	28	6	23	41	1.78
11525327--11525360	18	1.9	17	94	5	59	55	2	0	41	1.15
11525359--11525480	61	2.0	61	93	0	208	42	8	9	40	1.66
11527625--11527705	25	3.3	25	78	11	78	30	20	29	18	1.97
11528593--11528634	22	2.0	22	86	13	61	42	14	0	42	1.45
11531302--11531377	38	2.0	37	87	2	107	19	18	40	19	1.90
11531610--11531656	25	2.0	23	87	8	67	36	17	10	36	1.84
11537696--11537798	52	2.0	52	96	0	188	31	27	26	15	1.96
11537817--11537951	43	3.1	43	92	0	216	31	33	17	18	1.94
11537787--11537951	86	1.9	87	86	1	233	29	31	16	21	1.96
11538854--11539946	23	47.9	23	76	9	864	40	24	5	30	1.77
11538972--11539854	114	7.7	115	87	3	933	39	24	5	30	1.78
11543245--11543454	41	5.1	41	92	0	323	31	28	20	20	1.97
11543424--11543482	30	2.0	30	96	0	109	42	30	16	10	1.82
11543542--11543618	39	2.0	40	81	2	93	16	23	22	37	1.94
11544187--11544233	23	2.1	21	88	7	67	31	0	2	65	1.04
11557541--11557592	21	2.4	21	80	6	59	65	3	5	25	1.32
11558047--11558090	8	5.6	8	78	5	54	34	0	0	65	0.93
11558052--11558112	19	3.0	19	84	15	70	37	0	0	62	0.96
11562087--11562120	17	2.0	17	94	0	59	44	50	0	5	1.26
11566726--11566759	17	2.0	17	94	0	59	44	50	0	5	1.26
11573119--11573154	2	18.0	2	94	0	63	47	0	50	2	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11573942--11574017	31	2.5	31	82	0	98	39	6	14	39	1.72
11580601--11580646	16	2.8	16	81	15	58	78	0	2	19	0.86
11580656--11580692	19	2.0	19	89	5	58	64	0	5	29	1.15
11580660--11580705	19	2.3	20	81	7	58	71	0	4	23	1.03
11581385--11581440	9	6.0	9	76	15	51	28	3	1	66	1.19
11581385--11581442	10	6.1	10	74	23	54	29	3	1	65	1.19
11581390--11581443	19	2.8	19	78	15	58	25	5	1	66	1.23
11581457--11581574	62	1.9	62	81	10	143	32	1	4	61	1.25
11581490--11581576	32	2.8	30	80	14	104	34	0	4	60	1.17
11583288--11583335	24	2.1	22	84	7	60	70	0	14	14	1.16
11588591--11588648	31	1.9	30	86	10	82	41	10	12	36	1.76
11590645--11590696	19	2.7	19	85	5	61	40	1	1	55	1.22
11601805--11601840	16	2.2	16	90	0	54	22	2	0	75	0.94
11622529--11622580	9	6.2	8	78	13	52	17	1	0	80	0.80
11622527--11622580	24	2.2	24	83	6	74	20	1	0	77	0.86
11622528--11622572	15	3.0	15	83	0	54	17	2	0	80	0.82
11623384--11623425	21	2.0	21	90	0	66	76	4	0	19	0.96
11634170--11634217	15	3.3	15	70	5	53	58	2	2	37	1.22
11636298--11636367	36	2.0	36	83	13	92	25	4	1	68	1.16
11643936--11643995	30	2.0	31	86	3	86	23	21	10	45	1.82
11648510--11648953	225	2.0	227	89	1	694	29	31	8	31	1.86
11664495--11664630	23	6.0	23	86	4	161	19	19	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11674093--11674178	26	3.3	26	79	4	95	36	23	24	16	1.94
11676452--11676660	105	2.0	105	99	0	409	35	7	13	43	1.72
11676706--11676855	41	3.6	41	89	2	230	28	20	28	22	1.99
11679282--11679404	57	2.1	57	80	1	147	43	8	20	27	1.81
11679292--11679401	57	1.9	58	84	1	150	43	9	19	28	1.81
11687532--11687567	15	2.3	17	86	13	51	61	2	5	30	1.33
11687959--11688008	16	2.9	17	75	21	50	26	8	0	66	1.19
11687960--11688032	35	2.0	37	86	10	105	30	5	0	64	1.16
11688010--11688046	10	3.8	10	82	17	51	45	0	0	54	1.00
11687999--11688050	18	2.8	18	88	11	70	40	0	0	59	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153