genome.fa.s18.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  17  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5880236--5880404	85	2.0	88	84	8	231	39	14	8	37	1.77
5880503--5880571	27	2.6	26	79	6	84	71	0	1	27	0.95
5880758--5880813	10	5.6	10	78	6	60	23	5	0	71	1.06
5880753--5880793	19	2.2	19	95	0	73	29	7	0	63	1.21
5880760--5880822	29	2.2	29	82	5	74	26	6	1	65	1.26
5880847--5880888	19	2.2	19	86	0	57	35	2	2	59	1.23
5880847--5880909	10	6.4	10	71	10	58	33	3	3	60	1.28
5880927--5880982	28	1.9	28	92	7	94	37	0	1	60	1.07
5887558--5887621	23	2.6	24	87	9	85	79	4	0	15	0.89
5887578--5887621	17	2.6	17	85	3	54	84	4	0	11	0.77
5887886--5887918	15	2.2	15	94	0	57	69	0	30	0	0.88
5888279--5888350	36	2.0	36	97	0	135	18	11	23	47	1.80
5890962--5891146	50	3.7	50	99	0	361	16	32	23	26	1.96
5891241--5891272	13	2.5	13	94	0	55	56	12	0	31	1.37
5891419--5891491	5	14.6	5	76	20	64	54	4	1	39	1.28
5891420--5891462	19	2.3	19	92	8	70	55	0	2	41	1.12
5891426--5891490	24	2.7	24	80	9	69	56	4	1	36	1.29
5892071--5892251	99	1.8	99	89	4	283	49	16	7	27	1.72
5894185--5894315	62	2.1	62	91	1	210	48	21	6	22	1.73
5894574--5894631	6	9.7	6	88	0	80	62	13	5	18	1.50
5894547--5894718	18	9.4	18	69	11	100	58	12	7	22	1.59
5894574--5894702	12	10.8	12	77	8	93	57	10	7	24	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5894658--5894720	29	2.2	29	85	5	83	60	9	6	23	1.51
5894723--5894759	16	2.3	16	95	0	65	48	16	8	27	1.74
5895171--5895213	21	2.1	20	95	4	77	23	25	20	30	1.99
5902491--5902528	19	2.0	19	85	10	51	2	0	28	68	1.03
5903729--5903872	75	1.9	75	98	0	279	31	9	18	40	1.82
5921820--5921881	27	2.3	26	84	10	81	64	3	1	30	1.19
5925850--5925886	12	3.0	13	84	11	51	29	40	18	10	1.85
5926193--5926239	24	1.9	25	86	4	69	34	17	14	34	1.90
5930345--5930372	11	2.5	11	100	0	56	28	0	7	64	1.20
5931181--5931270	40	2.2	41	80	3	103	32	7	17	42	1.78
5931477--5931577	45	2.2	45	85	3	132	21	16	18	42	1.89
5931760--5932113	177	2.0	177	97	0	672	41	9	14	34	1.78
5934184--5934338	46	3.6	46	78	16	204	36	13	21	28	1.92
5934220--5934292	36	2.0	36	94	0	128	38	15	20	26	1.92
5934314--5934363	25	2.0	25	100	0	100	40	8	28	24	1.83
5934268--5934406	71	2.0	68	91	4	224	35	13	25	25	1.93
5937538--5937644	45	2.4	45	79	6	128	38	17	21	22	1.93
5937832--5937924	40	2.3	40	83	7	118	39	19	7	33	1.80
5937832--5937899	21	3.3	21	68	15	61	38	20	8	32	1.84
5938625--5938673	14	3.4	14	80	2	62	0	22	0	77	0.77
5938634--5938685	18	3.1	18	81	13	58	0	26	0	73	0.84
5938629--5938686	24	2.5	24	91	2	91	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5938619--5938682	14	5.0	14	69	19	59	0	25	0	75	0.81
5938716--5938744	14	2.1	14	93	6	51	10	13	0	75	1.04
5938910--5938950	20	2.0	20	85	9	55	51	2	0	46	1.14
5941104--5941227	29	4.2	30	75	10	96	31	15	8	45	1.75
5942305--5942339	10	3.4	10	88	7	52	34	0	0	65	0.93
5942349--5942381	8	4.2	8	84	7	50	42	0	0	57	0.98
5942350--5942380	15	2.1	15	93	0	53	38	0	0	61	0.96
5942307--5942381	23	3.0	23	73	22	71	37	4	0	58	1.17
5943816--5943858	12	3.6	12	83	0	50	51	37	9	2	1.47
5943816--5943856	18	2.3	18	91	0	64	53	36	7	2	1.42
5950183--5950210	2	14.0	2	100	0	56	50	50	0	0	1.00
5957866--5957893	7	4.0	7	100	0	56	42	0	28	28	1.56
5958414--5958463	24	2.1	24	81	7	57	36	8	0	56	1.29
5963261--5963316	28	2.0	29	82	3	69	42	7	7	42	1.59
5963543--5963594	26	2.0	27	84	3	70	63	7	0	28	1.22
5964552--5964599	23	2.1	23	88	3	71	39	0	2	58	1.10
5964750--5964813	33	1.9	32	84	12	85	59	1	0	39	1.07
5964787--5964827	18	2.4	17	88	11	66	68	0	0	31	0.90
5964979--5965020	16	2.6	16	88	3	57	66	0	0	33	0.92
5971619--5971699	10	8.1	10	75	13	60	59	2	3	34	1.29
5971612--5971683	29	2.5	29	80	6	76	59	1	4	34	1.25
5971632--5971699	29	2.3	30	80	10	77	61	2	1	33	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5977570--5977614	22	2.1	21	84	12	56	51	2	0	46	1.13
5982420--5982469	20	2.4	21	80	12	59	48	2	0	50	1.12
5990607--5990637	7	4.4	7	95	0	53	38	0	0	61	0.96
5992252--5992313	31	2.0	31	93	0	106	35	8	17	38	1.80
5996930--5996982	28	1.9	28	88	3	81	49	0	0	50	1.00
5996930--5996988	27	2.2	26	81	6	73	54	0	0	45	0.99
5998578--5998610	12	2.8	12	95	4	59	27	0	9	63	1.24
5998578--5998632	21	2.5	22	82	8	67	27	1	7	63	1.31
5999709--5999968	72	3.6	72	98	0	504	26	6	24	42	1.78
6000616--6000666	27	2.0	25	81	14	59	37	0	1	60	1.08
6001992--6002026	17	2.1	17	89	10	54	28	11	0	60	1.32
6003164--6003216	10	5.3	10	74	17	56	60	0	0	39	0.97
6003515--6003561	15	3.5	14	77	16	55	31	0	0	68	0.90
6003515--6003548	7	4.7	7	85	7	50	32	0	0	67	0.91
6003522--6003576	25	2.2	25	86	0	74	41	0	0	58	0.98
6005068--6005104	9	4.1	9	92	0	65	45	13	10	29	1.77
6005319--6005366	25	1.9	25	86	0	69	22	37	0	39	1.55
6006360--6006388	11	2.6	11	100	0	58	34	0	10	55	1.34
6008215--6008306	46	2.0	46	87	2	132	40	1	13	45	1.50
6008365--6008412	24	2.0	24	88	8	71	50	12	20	16	1.78
6008503--6008624	42	2.9	43	85	3	149	18	19	15	46	1.84
6010324--6010425	41	2.5	40	87	6	141	27	25	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6010324--6010440	41	2.9	41	82	5	112	28	25	20	25	1.99
6011556--6011663	54	2.0	54	100	0	216	38	16	22	22	1.93
6011781--6011824	19	2.3	20	84	7	56	27	20	11	40	1.86
6014364--6014392	8	3.6	8	100	0	58	72	13	0	13	1.13
6016527--6016781	86	2.9	88	86	4	331	31	23	21	22	1.98
6016525--6016835	86	3.6	84	82	6	313	32	23	22	22	1.98
6016797--6017170	44	8.6	44	71	13	267	31	20	20	27	1.97
6016917--6017127	46	4.7	46	77	10	220	31	21	20	26	1.98
6016922--6017211	133	2.2	134	90	4	444	32	20	19	27	1.97
6016796--6017220	44	9.8	43	68	11	204	32	19	20	27	1.97
6025167--6025257	19	4.8	20	76	11	84	61	1	5	31	1.26
6025541--6025597	27	2.1	28	80	9	73	47	1	0	50	1.11
6025657--6025869	86	2.5	85	80	5	216	32	7	20	39	1.80
6030681--6030711	10	3.0	10	90	9	53	29	3	0	67	1.06
6033752--6033794	4	10.0	4	80	14	50	74	0	23	2	0.93
6033752--6033794	13	3.3	13	83	9	61	74	0	23	2	0.93
6034578--6034612	8	4.4	8	88	0	52	40	2	20	37	1.67
6038759--6038851	18	5.2	18	88	0	132	30	24	13	31	1.94
6042905--6042935	11	2.8	11	95	0	53	19	48	3	29	1.64
6058230--6058279	17	2.7	20	78	18	70	10	0	44	46	1.37
6062869--6062918	17	2.7	20	78	18	70	10	0	44	46	1.37
6065113--6065149	19	1.9	19	100	0	74	16	8	37	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6065113--6065162	19	2.6	19	87	6	57	16	8	36	40	1.77
6068535--6068559	13	1.9	13	100	0	50	32	4	24	40	1.73
6070333--6070431	41	2.4	41	87	0	144	30	20	25	24	1.99
6072660--6072693	11	2.8	13	91	8	54	44	11	8	35	1.72
6073758--6074014	51	5.4	45	87	9	277	32	15	22	29	1.94
6073802--6074018	51	4.3	51	97	0	407	32	15	23	29	1.95
6073758--6074018	102	2.6	102	92	5	421	33	14	22	29	1.94
6075769--6075813	19	2.4	19	85	7	56	17	6	35	40	1.76
6077895--6078016	42	2.9	42	81	2	154	27	16	23	32	1.96
6077895--6078012	43	2.8	42	81	8	132	27	16	23	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153