genome.fa.s18.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  11  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3621170--3621198	6	4.8	6	100	0	58	17	48	17	17	1.82
3628629--3628816	104	1.8	104	86	6	274	23	26	19	30	1.98
3628629--3628859	104	2.2	104	80	6	236	25	25	16	32	1.97
3637408--3637449	3	14.0	3	100	0	84	0	33	0	66	0.92
3639911--3639960	7	7.1	7	93	6	84	58	2	0	40	1.10
3644023--3644196	85	2.0	85	92	2	287	37	15	20	27	1.92
3646765--3646952	67	3.0	61	83	12	238	35	7	17	39	1.79
3646854--3646891	20	1.9	20	88	0	58	18	5	28	47	1.70
3646911--3647227	110	2.9	110	100	0	634	31	11	20	37	1.87
3666656--3666695	19	2.1	19	85	4	53	57	10	7	25	1.57
3672395--3672436	11	3.5	13	84	15	56	38	4	0	57	1.20
3672407--3672500	30	3.1	30	85	10	122	31	3	0	64	1.09
3672377--3672501	40	3.2	38	79	14	130	31	4	0	64	1.12
3672379--3672516	70	2.0	71	85	4	190	31	3	0	64	1.11
3672704--3672753	22	2.3	22	79	6	57	22	8	8	62	1.49
3674014--3674139	67	1.9	66	80	8	148	40	10	9	39	1.72
3675832--3675858	2	13.5	2	100	0	54	48	0	51	0	1.00
3676026--3676072	15	3.2	14	80	11	58	31	2	0	65	1.04
3677583--3677634	13	4.0	13	84	0	59	32	0	7	59	1.26
3691997--3692033	19	1.9	19	89	10	58	16	5	32	45	1.70
3692000--3692045	18	2.5	19	82	3	58	10	6	36	45	1.65
3693928--3693969	20	2.0	21	86	4	59	2	14	9	73	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3702197--3702229	16	2.1	16	100	0	66	48	12	6	33	1.65
3702200--3702235	16	2.2	16	90	0	54	50	13	8	27	1.71
3703995--3704024	2	15.5	2	93	6	53	50	0	0	50	1.00
3705979--3706036	30	1.9	30	89	0	89	41	3	24	31	1.71
3706248--3706279	13	2.5	13	94	0	55	31	0	12	56	1.37
3706374--3706616	51	4.7	50	89	4	317	27	25	27	19	1.99
3706488--3706616	26	5.0	26	61	17	72	28	26	26	18	1.98
3706496--3706576	25	3.2	25	63	16	67	27	27	27	18	1.98
3706514--3706593	25	3.2	25	63	16	65	30	30	23	16	1.96
3708043--3708226	45	4.1	44	90	2	278	40	20	18	20	1.91
3708043--3708248	45	4.8	42	84	7	195	39	21	18	20	1.93
3712158--3712202	9	5.3	9	84	10	60	55	31	0	13	1.38
3712158--3712211	9	6.8	8	83	8	58	53	33	0	12	1.39
3720819--3720874	2	28.0	2	96	0	103	50	1	48	0	1.11
3730038--3730077	20	2.0	20	90	0	62	37	22	0	40	1.54
3740317--3740383	34	1.9	35	84	3	91	43	13	10	32	1.78
3743653--3743684	16	2.1	16	94	5	57	40	0	0	59	0.97
3743640--3743692	27	2.1	26	86	10	74	43	0	0	56	0.99
3746554--3746648	27	3.6	27	80	8	115	21	29	25	24	1.99
3746546--3746750	48	4.1	50	89	1	238	16	32	25	25	1.96
3746650--3746750	24	4.2	24	94	0	175	13	34	25	25	1.93
3746644--3746750	12	8.9	12	66	14	60	14	34	25	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3746546--3746779	24	9.2	27	81	8	167	15	32	25	26	1.96
3757784--3757868	27	3.3	26	79	11	84	38	17	1	42	1.57
3757882--3757953	26	2.7	26	74	6	65	31	20	5	41	1.76
3757784--3757926	13	11.0	13	67	5	74	35	18	2	42	1.65
3759659--3759718	21	3.0	21	85	4	79	16	23	16	43	1.87
3761222--3761267	17	2.6	18	82	6	58	43	21	4	30	1.72
3763189--3763247	31	1.9	31	89	6	93	59	0	1	38	1.08
3763189--3763282	11	8.9	11	71	22	69	56	0	2	41	1.11
3763189--3763332	40	3.5	40	86	9	191	59	0	2	37	1.12
3763224--3763257	17	2.0	17	94	0	59	55	0	0	44	0.99
3766520--3766598	24	3.2	24	74	5	68	20	27	26	25	1.99
3766520--3766605	27	3.3	26	79	9	104	20	26	26	25	1.99
3766241--3766968	364	2.0	364	98	0	1411	24	21	24	29	1.99
3766876--3767107	24	9.3	24	84	7	257	15	34	25	25	1.95
3766968--3767054	12	7.2	12	70	14	72	12	37	24	25	1.90
3777535--3777794	130	2.0	130	99	0	511	24	17	18	39	1.91
3779579--3779639	27	2.3	27	97	0	113	34	8	31	26	1.86
3780333--3780379	16	2.9	16	78	6	51	31	4	4	59	1.36
3781640--3781671	16	2.0	16	93	0	55	25	0	3	71	1.00
3783987--3784020	16	2.1	16	88	0	50	50	14	17	17	1.79
3786821--3786861	21	2.0	21	90	0	64	29	21	29	19	1.98
3788767--3788800	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3792391--3792503	33	3.4	32	74	6	84	23	25	18	32	1.97
3792443--3792634	102	1.9	100	88	6	289	27	24	16	31	1.96
3792411--3792610	33	6.0	33	67	10	100	26	24	17	32	1.97
3803369--3803413	23	2.0	23	86	4	65	40	2	17	40	1.62
3803379--3803423	23	2.0	23	82	4	56	35	2	15	46	1.58
3803585--3803623	19	2.0	21	85	10	55	15	10	5	69	1.34
3803876--3803987	51	2.2	52	80	6	131	32	6	6	55	1.50
3808641--3808688	25	1.9	25	100	0	96	47	8	4	39	1.53
3810051--3810129	29	2.7	29	96	2	140	58	22	5	13	1.55
3810090--3810144	24	2.3	23	75	9	56	60	25	1	12	1.43
3810093--3810151	25	2.4	24	82	2	64	62	23	3	10	1.42
3811614--3811671	30	1.9	30	96	0	107	31	10	12	46	1.74
3823121--3823184	26	2.5	26	84	2	76	50	1	3	45	1.27
3823519--3823589	33	2.2	33	85	5	92	45	4	0	50	1.21
3826597--3826650	13	4.2	13	82	0	72	31	9	24	35	1.87
3827292--3827398	51	2.1	51	91	0	169	28	23	14	33	1.93
3843309--3843337	14	2.1	14	100	0	58	51	6	13	27	1.66
3847534--3847579	14	3.3	14	81	0	56	50	28	0	21	1.49
3858407--3858567	81	2.0	81	93	0	277	38	5	23	32	1.78
3862976--3863028	20	2.6	21	90	6	90	22	9	37	30	1.86
3865215--3865305	30	3.0	30	98	1	173	26	24	6	42	1.78
3865212--3865301	15	6.1	15	71	11	69	28	23	6	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3866618--3867222	303	2.0	302	96	0	1120	26	24	14	34	1.94
3868196--3868221	8	3.2	8	100	0	52	38	0	0	61	0.96
3869169--3869328	25	6.6	25	84	5	190	18	25	18	36	1.94
3871664--3871869	102	2.0	102	98	0	394	18	27	16	36	1.93
3872554--3872613	30	2.0	31	90	3	95	28	16	3	51	1.60
3884256--3884305	26	1.9	26	91	0	82	24	32	8	36	1.84
3884566--3884700	69	2.0	69	92	0	225	36	17	20	25	1.94
3885912--3885949	19	2.0	20	89	5	60	60	7	2	28	1.38
3893488--3893526	19	2.0	20	90	5	62	58	2	0	38	1.12
3894094--3894128	17	1.9	19	88	11	56	14	5	20	60	1.54
3906008--3906040	15	2.4	14	90	10	50	57	6	0	36	1.23
3906141--3906182	21	2.0	22	90	9	70	50	4	7	38	1.51
3907799--3907872	21	3.6	21	72	7	62	40	20	24	14	1.90
3907795--3907903	41	2.6	42	85	8	152	43	19	22	14	1.87
3911556--3911603	25	2.0	24	91	4	78	43	14	4	37	1.65
3915567--3915612	23	2.0	23	95	0	83	21	15	10	52	1.73
3929865--3929895	16	1.9	16	93	0	53	61	9	0	29	1.28
3930081--3930130	16	3.2	16	78	10	50	56	4	6	34	1.43
3937256--3937281	13	2.0	13	100	0	52	38	23	7	30	1.83
3941274--3941329	22	2.5	22	83	8	69	42	16	5	35	1.70
3941287--3941329	23	1.9	23	90	4	70	39	13	6	39	1.72
3946359--3946403	23	2.0	23	86	4	65	46	15	4	33	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3946356--3946411	22	2.5	22	83	8	69	44	16	3	35	1.65
3946369--3946411	23	1.9	23	90	4	70	41	13	4	39	1.66
3959807--3959863	15	3.7	15	76	6	51	38	8	3	49	1.51
3961700--3961751	21	2.5	20	76	17	52	34	0	5	59	1.21
3962154--3962200	17	2.5	19	86	10	62	68	0	0	31	0.90
3962247--3962286	16	2.6	15	82	17	55	67	0	0	32	0.91
3962241--3962295	17	3.2	17	77	12	58	65	0	0	34	0.93
3962761--3962802	19	2.2	19	86	0	57	38	2	0	59	1.10
3962769--3962854	21	4.1	21	77	11	88	34	0	0	65	0.93
3975348--3975531	50	3.7	49	83	6	201	30	27	18	23	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153