genome.fa.s18.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  103  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32358288--32358497	44	4.8	44	82	5	264	29	26	18	26	1.98
32358508--32358726	88	2.5	88	89	0	321	20	24	27	27	1.99
32358706--32358995	44	6.6	44	79	5	289	30	26	16	27	1.97
32358707--32358995	88	3.3	89	80	6	318	30	25	16	27	1.97
32358723--32358995	132	2.1	133	93	0	467	29	26	15	28	1.96
32363981--32364019	3	13.0	3	88	0	60	64	2	2	30	1.21
32364741--32364790	16	3.3	16	75	16	52	44	0	0	56	0.99
32364805--32364846	13	2.9	14	79	13	50	50	0	2	47	1.14
32371158--32371184	14	1.9	14	100	0	54	33	22	7	37	1.82
32371159--32371193	14	2.5	14	90	0	52	28	25	8	37	1.85
32375473--32375498	12	2.2	12	100	0	52	42	19	23	15	1.89
32375909--32376225	110	3.0	107	74	14	323	24	1	13	59	1.43
32376023--32376207	99	1.9	99	87	2	273	24	2	15	57	1.49
32378227--32378360	33	4.1	33	74	5	119	17	44	12	26	1.84
32381949--32381992	10	3.7	13	77	20	51	72	0	0	27	0.85
32381950--32381992	22	1.9	23	90	4	70	74	0	0	25	0.82
32382430--32382467	20	1.9	20	94	0	67	57	7	0	34	1.28
32392405--32392534	43	3.0	43	74	16	142	23	16	28	32	1.96
32397539--32397571	3	11.0	3	100	0	66	66	0	0	33	0.92
32398835--32398873	19	2.0	20	90	5	62	43	0	2	53	1.14
32398836--32398886	19	2.5	20	78	18	52	45	0	3	50	1.20
32401775--32401813	16	2.4	17	86	4	53	38	5	0	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32402126--32402155	13	2.3	13	100	0	60	86	0	0	13	0.57
32402171--32402211	20	2.0	20	90	9	66	68	0	0	31	0.90
32403381--32403405	11	2.3	11	100	0	50	28	0	0	72	0.86
32403531--32403562	16	2.0	16	93	0	55	28	0	0	71	0.86
32406408--32406506	51	1.9	51	89	0	153	28	24	6	41	1.78
32406463--32406639	30	5.8	30	69	2	102	29	22	5	41	1.77
32406459--32406628	61	2.8	61	87	0	241	30	21	5	42	1.75
32411726--32411972	28	8.6	28	74	7	176	35	14	25	25	1.93
32411726--32411972	56	4.3	57	78	4	264	35	14	25	25	1.93
32411726--32411972	117	2.2	112	83	3	305	35	14	25	25	1.93
32412013--32412098	27	3.1	28	70	21	83	39	12	19	27	1.88
32412159--32412245	27	3.2	27	69	18	72	37	9	27	25	1.86
32417779--32417857	34	2.3	34	84	6	97	30	18	21	29	1.97
32418308--32418456	27	5.6	27	89	2	221	14	17	26	41	1.88
32418308--32418456	80	1.9	80	91	2	246	14	17	26	41	1.88
32418308--32418456	53	2.8	54	87	2	221	14	17	26	41	1.88
32423961--32424201	50	4.8	49	81	6	205	24	27	21	26	1.99
32423960--32424195	99	2.3	104	79	5	248	24	27	20	27	1.99
32447028--32447067	10	3.8	10	81	12	53	57	5	0	37	1.21
32475455--32475519	32	2.0	33	90	3	105	47	6	21	24	1.73
32479382--32479430	16	3.2	15	88	8	64	4	12	0	83	0.77
32479382--32479435	19	3.0	19	86	7	69	3	14	0	81	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32479397--32479453	15	3.8	15	81	4	62	1	17	1	78	0.91
32479973--32480100	30	4.4	30	79	7	111	37	3	23	35	1.71
32479993--32480071	30	2.7	30	88	2	115	37	3	21	36	1.72
32480294--32480497	76	2.6	77	87	5	277	34	21	15	28	1.94
32485509--32485565	22	2.4	26	80	16	70	38	14	26	21	1.91
32489130--32490500	75	18.2	76	86	3	1797	33	20	16	28	1.95
32489132--32490500	151	9.1	151	86	3	1783	33	20	16	28	1.95
32499644--32499712	19	3.4	19	77	14	75	1	20	0	78	0.83
32499652--32499712	23	2.7	23	85	7	72	0	22	0	77	0.78
32499656--32499718	8	8.2	8	76	15	53	1	23	0	74	0.90
32499657--32499730	15	5.3	14	72	13	55	1	25	0	72	0.92
32499656--32499730	11	7.1	11	73	18	61	1	25	0	73	0.91
32500216--32500329	30	3.8	30	82	3	140	41	0	22	35	1.60
32500216--32500344	31	4.4	30	82	4	147	39	0	24	34	1.61
32500213--32500345	59	2.3	58	82	7	169	39	0	24	35	1.61
32500502--32500991	76	6.4	76	82	3	524	38	18	15	27	1.91
32500599--32500994	153	2.6	151	83	4	476	37	19	15	27	1.92
32500870--32501112	122	2.0	121	89	2	371	39	16	14	29	1.88
32500988--32501163	75	2.3	75	82	4	246	33	18	17	30	1.94
32501227--32501295	19	3.4	19	77	14	75	1	20	0	78	0.83
32501235--32501295	23	2.7	23	85	7	72	0	22	0	77	0.78
32501239--32501301	8	8.2	8	76	15	53	1	23	0	74	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32501240--32501313	15	5.3	14	72	13	55	1	25	0	72	0.92
32501239--32501313	11	7.1	11	73	18	61	1	25	0	73	0.91
32501799--32501912	30	3.8	30	82	3	140	41	0	22	35	1.60
32501799--32501927	31	4.4	30	82	4	147	39	0	24	34	1.61
32501796--32501928	59	2.3	58	82	7	169	39	0	24	35	1.61
32502085--32502574	76	6.4	76	82	3	524	38	18	15	27	1.91
32502182--32502577	153	2.6	151	83	4	476	37	19	15	27	1.92
32502453--32502695	122	2.0	121	89	2	371	39	16	14	29	1.88
32502375--32502775	197	2.0	200	88	3	596	38	17	14	28	1.90
32502571--32502912	76	4.5	74	87	5	490	36	18	16	28	1.93
32502296--32502844	273	2.0	272	86	4	768	37	18	15	28	1.91
32502571--32502912	151	2.3	151	89	2	519	36	18	16	28	1.93
32504414--32504515	29	3.6	28	79	10	109	37	3	24	34	1.74
32505811--32505895	29	2.9	29	81	11	102	40	2	18	38	1.64
32506084--32506595	75	6.7	76	87	2	683	33	21	15	29	1.94
32506084--32506595	227	2.2	228	87	3	708	33	21	15	29	1.94
32508078--32508169	30	3.1	30	79	7	107	39	2	20	38	1.65
32508121--32508201	30	2.7	30	90	5	121	38	1	22	38	1.62
32520193--32520256	26	2.4	27	76	5	67	29	26	15	28	1.96
32524698--32524734	11	3.6	11	82	17	53	40	0	0	59	0.97
32530266--32530293	5	5.6	5	100	0	56	82	0	17	0	0.68
32536587--32536625	13	2.8	13	85	11	51	82	15	0	2	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32539061--32539108	20	2.4	20	82	6	62	33	22	29	14	1.94
32561379--32561534	79	2.0	77	94	2	276	35	8	10	44	1.71
32564930--32564987	27	2.1	27	84	6	73	25	29	12	32	1.92
32565108--32565217	39	2.8	39	91	0	175	30	13	11	43	1.80
32565613--32565646	16	2.1	16	100	0	68	32	32	5	29	1.81
32571060--32571113	27	2.0	27	81	0	63	29	27	12	29	1.94
32577516--32577593	32	2.4	32	84	0	102	29	26	14	29	1.95
32577457--32577650	93	2.1	93	83	1	237	28	26	11	32	1.92
32577548--32577664	61	1.9	61	82	3	146	26	24	12	35	1.92
32579512--32579589	32	2.4	32	84	0	102	29	26	14	29	1.95
32579453--32579646	93	2.1	93	83	1	237	28	26	11	32	1.92
32579544--32579807	61	4.3	60	79	3	251	25	23	13	37	1.92
32579573--32579798	122	1.9	122	81	1	283	26	23	14	35	1.93
32579924--32580029	53	2.0	53	84	0	140	27	24	12	35	1.91
32594926--32594968	4	10.5	4	82	5	50	81	0	16	2	0.79
32594926--32594972	12	3.8	12	86	5	67	82	0	14	2	0.75
32598687--32598783	44	2.2	43	80	7	106	31	21	17	28	1.96
32599142--32599641	44	11.8	42	79	8	466	27	24	18	29	1.98
32599189--32599641	126	3.6	126	91	3	675	27	24	18	29	1.98
32599148--32599641	82	5.9	82	82	8	285	27	24	18	29	1.98
32599655--32600134	88	5.5	87	88	0	636	21	22	26	29	1.99
32599679--32599989	44	7.1	43	65	14	138	20	23	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32599655--32600134	264	1.8	264	90	0	773	21	22	26	29	1.99
32605761--32605798	20	1.9	20	84	10	51	73	2	5	18	1.14
32606239--32606281	13	3.2	13	87	6	59	86	2	2	9	0.76
32615059--32615187	50	2.6	50	85	4	170	26	20	29	23	1.99
32615058--32615252	50	3.9	49	77	9	164	27	20	27	24	1.99
32615452--32615481	12	2.4	13	94	5	53	53	6	20	20	1.67
32621585--32621659	23	3.3	23	90	0	114	37	1	13	48	1.51
32621594--32621659	13	5.5	13	72	26	65	37	1	13	46	1.53
32621592--32621650	10	5.2	11	70	22	50	37	0	13	49	1.43
32633581--32633635	19	3.0	18	78	5	65	20	5	1	72	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153