genome.fa.s18.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr7
Parameters: 2 7 7 80 10 50 1000
Length:  47983841

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   

This is table  63  of  153  ( 18265 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20273851--20274019	86	2.0	86	83	6	218	40	19	7	32	1.80
20274046--20274090	19	2.3	20	77	11	58	62	0	2	35	1.08
20274265--20274364	29	3.4	28	77	8	101	35	4	2	59	1.28
20274282--20274406	19	6.7	19	72	16	84	35	2	0	61	1.15
20274354--20274406	24	2.0	26	86	13	74	33	3	0	62	1.13
20274356--20274409	8	6.5	8	79	8	63	33	1	0	64	1.04
20274321--20274472	9	16.6	9	69	18	75	34	1	1	61	1.18
20274483--20274652	84	2.0	86	84	2	227	34	8	17	39	1.80
20278991--20279053	31	2.0	31	84	6	83	44	12	9	33	1.75
20280939--20280974	13	2.6	14	91	8	56	61	0	0	38	0.96
20286505--20286549	23	2.0	23	82	8	56	37	8	13	40	1.76
20296804--20297195	191	2.0	195	90	3	612	29	17	18	34	1.95
20303504--20303764	112	2.3	110	80	7	292	24	19	17	37	1.94
20306938--20307007	22	3.2	22	68	8	70	51	8	1	38	1.41
20306938--20307125	44	4.5	44	80	15	229	48	9	0	41	1.40
20306949--20307018	22	3.2	22	66	8	61	50	10	1	38	1.45
20307000--20307064	32	2.0	32	100	0	130	41	9	0	49	1.35
20306956--20307108	76	2.0	76	93	0	261	46	9	0	43	1.41
20307789--20307828	18	2.3	18	91	4	64	67	2	7	22	1.28
20307861--20307916	23	2.5	23	83	13	73	62	0	12	25	1.30
20307856--20307916	21	2.8	22	79	16	65	65	0	11	22	1.24
20322573--20322894	113	2.8	114	80	4	375	36	20	17	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20324394--20324527	21	6.4	21	66	13	53	48	16	16	18	1.81
20324388--20324493	42	2.5	42	76	10	108	50	16	16	16	1.79
20326185--20326223	18	2.2	18	100	0	78	38	15	15	30	1.88
20326297--20326337	21	2.0	20	86	13	57	48	2	4	43	1.37
20326363--20326448	43	2.0	43	97	0	163	43	11	8	37	1.71
20331218--20331344	62	2.0	62	85	5	168	25	29	18	26	1.98
20338436--20338469	12	2.9	12	91	4	52	0	23	0	76	0.79
20345078--20345110	8	4.2	8	92	7	50	45	0	0	54	0.99
20345136--20345179	5	9.0	5	85	9	56	59	2	0	38	1.10
20346963--20347012	26	1.9	26	91	0	82	52	0	4	44	1.20
20347747--20347780	17	2.0	17	88	0	50	64	2	2	29	1.22
20348209--20348252	20	2.2	20	84	11	56	40	11	22	25	1.87
20348491--20348624	67	2.0	67	98	0	259	26	20	17	35	1.94
20356829--20356893	18	3.6	18	70	13	53	12	7	6	73	1.23
20356818--20356890	37	2.0	37	84	10	96	12	6	6	73	1.22
20356935--20357011	25	3.1	25	75	9	77	42	0	5	51	1.24
20356962--20357027	35	1.9	34	90	3	105	42	0	1	56	1.08
20356996--20357066	20	3.4	21	72	16	67	46	1	0	52	1.09
20357010--20357046	19	1.9	19	89	10	58	45	2	0	51	1.15
20356996--20357066	21	3.5	20	77	14	65	46	1	0	52	1.09
20356991--20357083	42	2.3	42	78	9	95	45	1	2	51	1.20
20357104--20357135	16	1.9	17	93	6	57	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20357104--20357151	18	2.7	18	84	9	55	45	0	0	54	0.99
20357226--20357329	32	3.2	33	80	12	128	54	1	0	42	1.17
20357289--20357327	20	2.0	20	90	5	62	56	2	0	41	1.13
20357391--20357451	21	3.0	20	90	7	95	60	0	0	39	0.97
20357506--20357591	34	2.5	35	77	9	88	69	4	12	12	1.33
20357521--20357586	35	1.9	34	87	9	98	69	4	12	13	1.33
20357915--20357948	16	2.1	16	94	0	59	38	17	5	38	1.74
20362461--20362508	10	4.3	12	72	17	50	56	0	0	43	0.99
20371964--20372005	21	2.0	21	86	9	59	45	19	9	26	1.80
20374607--20374634	12	2.3	12	100	0	56	60	0	0	39	0.97
20376341--20376371	4	7.8	4	100	0	62	77	0	22	0	0.77
20389859--20389935	19	3.8	19	72	12	64	54	0	5	40	1.23
20398556--20398594	18	2.2	18	85	0	51	46	2	2	48	1.29
20398574--20398633	29	2.1	29	81	9	70	45	1	1	51	1.21
20399671--20399711	16	2.7	15	84	3	55	19	2	24	53	1.57
20399671--20399706	16	2.3	16	90	4	56	22	2	19	55	1.56
20400194--20400250	27	2.1	27	100	0	114	45	7	0	47	1.30
20404160--20404223	7	9.1	7	100	0	128	57	14	0	28	1.37
20404225--20404254	7	4.3	7	100	0	60	56	16	0	26	1.40
20405145--20405252	48	2.2	49	80	9	116	53	6	7	32	1.54
20405164--20405297	48	2.8	47	83	7	148	52	5	8	33	1.55
20406561--20406629	18	3.9	18	78	16	81	68	4	2	24	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20406570--20406618	16	2.9	16	80	11	53	69	2	4	24	1.17
20406604--20406660	10	5.6	10	74	10	53	70	3	0	26	1.03
20409685--20409750	31	2.2	30	78	10	71	37	9	10	42	1.71
20409701--20409763	31	2.0	31	93	0	108	36	6	9	47	1.62
20418771--20418820	2	25.0	2	100	0	100	50	0	50	0	1.00
20421174--20421454	140	2.0	140	91	0	454	30	19	13	36	1.90
20425021--20425073	17	3.1	17	76	23	58	28	0	0	71	0.86
20426367--20426496	67	1.9	67	88	0	197	44	16	14	24	1.85
20427204--20427278	31	2.4	31	95	0	132	24	29	17	29	1.97
20427193--20427259	31	2.4	25	70	25	62	25	28	19	26	1.99
20427254--20427382	50	2.5	51	90	5	199	25	22	16	35	1.94
20430595--20430638	23	1.9	23	81	9	54	40	9	9	40	1.68
20436532--20436580	24	2.0	24	100	0	98	51	16	8	24	1.71
20436889--20436935	15	3.3	14	82	5	51	76	2	6	14	1.08
20436893--20436935	10	4.3	10	79	8	52	76	2	6	13	1.08
20440874--20440903	6	4.8	6	95	4	51	83	0	0	16	0.65
20440959--20441175	108	2.0	108	91	0	353	39	15	17	28	1.89
20443597--20443722	42	3.0	42	82	6	139	30	26	12	30	1.93
20443869--20443986	31	3.8	31	84	4	157	25	27	18	28	1.98
20443962--20444138	50	3.5	50	92	2	275	25	23	15	35	1.94
20447679--20447774	43	2.4	39	82	7	111	33	25	7	34	1.83
20451364--20451400	19	2.0	19	85	15	51	24	2	5	67	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20452650--20452684	17	2.1	17	100	0	70	28	17	17	37	1.92
20455368--20455435	9	7.6	9	81	6	84	45	20	7	26	1.77
20455368--20455435	27	2.5	28	85	7	104	45	20	7	26	1.77
20455456--20455507	18	2.8	18	76	5	50	21	0	9	69	1.17
20455463--20455501	12	3.2	12	88	0	51	23	0	12	64	1.28
20455533--20455558	5	5.2	5	100	0	52	0	0	57	42	0.98
20455655--20455689	18	1.9	18	94	0	61	28	11	8	51	1.67
20456245--20456300	11	5.1	11	80	0	58	55	1	25	17	1.52
20461241--20461283	17	2.5	17	84	0	59	23	4	0	72	1.04
20468133--20468181	13	3.8	12	79	12	53	4	18	0	77	0.92
20470861--20470893	17	1.9	17	100	0	66	12	18	24	45	1.83
20471880--20472519	320	2.0	320	99	0	1271	41	9	7	40	1.67
20473542--20474142	297	2.0	297	99	0	1193	32	10	19	36	1.86
20475207--20475272	25	3.0	21	73	16	69	28	3	15	53	1.57
20476534--20476605	28	2.6	28	78	8	92	58	5	5	30	1.44
20476677--20476741	19	3.4	19	95	2	112	47	20	7	24	1.76
20476729--20476773	14	3.1	14	83	3	54	40	17	8	33	1.81
20482029--20482079	13	3.9	13	80	10	59	3	17	0	78	0.90
20486757--20486916	68	2.4	68	93	0	266	41	0	15	42	1.52
20486750--20486930	34	5.4	33	79	6	193	40	1	13	44	1.51
20490255--20490375	41	2.9	41	78	10	111	33	23	11	32	1.90
20492483--20492536	25	2.2	23	76	20	56	53	5	0	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20503733--20503772	21	2.0	20	90	5	62	35	0	22	42	1.54
20503738--20503780	21	2.1	21	83	12	54	32	2	20	44	1.65
20522576--20522622	23	2.0	23	83	0	58	44	17	6	31	1.73
20532827--20532860	17	1.9	18	88	5	52	35	23	0	41	1.55
20533305--20533348	18	2.4	18	85	7	54	15	9	4	70	1.30
20537734--20537768	13	2.7	13	100	0	70	17	45	22	14	1.84
20544374--20544400	13	2.1	13	100	0	54	14	37	33	14	1.88
20548702--20548741	18	2.2	19	90	4	64	72	0	2	25	0.97
20552557--20552604	23	2.1	23	92	7	80	20	12	25	41	1.87
20557679--20557729	9	6.0	9	78	17	56	15	1	1	80	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153